Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01801

Experiment: TSB plate, Mixed culture; Streptomyces ossamyceticus SAI_001 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01799 and MPMX20_01800 are separated by 54 nucleotidesMPMX20_01800 and MPMX20_01801 are separated by 14 nucleotidesMPMX20_01801 and MPMX20_01802 are separated by 46 nucleotides MPMX20_01799: MPMX20_01799 - Lipoprotein-releasing system transmembrane protein LolE, at 1,892,271 to 1,893,515 _01799 MPMX20_01800: MPMX20_01800 - N-acetyl-D-glucosamine kinase, at 1,893,570 to 1,894,481 _01800 MPMX20_01801: MPMX20_01801 - NAD-dependent protein deacylase, at 1,894,496 to 1,895,317 _01801 MPMX20_01802: MPMX20_01802 - hypothetical protein, at 1,895,364 to 1,897,295 _01802 Position (kb) 1894 1895 1896Strain fitness (log2 ratio) -2 -1 0 1 2at 1893.601 kb on + strandat 1893.735 kb on + strand, within MPMX20_01800at 1893.743 kb on - strand, within MPMX20_01800at 1893.786 kb on + strand, within MPMX20_01800at 1893.842 kb on + strand, within MPMX20_01800at 1893.854 kb on + strand, within MPMX20_01800at 1893.862 kb on - strand, within MPMX20_01800at 1893.902 kb on + strand, within MPMX20_01800at 1893.966 kb on + strand, within MPMX20_01800at 1893.974 kb on - strand, within MPMX20_01800at 1893.974 kb on - strand, within MPMX20_01800at 1894.013 kb on + strand, within MPMX20_01800at 1894.019 kb on + strand, within MPMX20_01800at 1894.086 kb on + strand, within MPMX20_01800at 1894.089 kb on - strand, within MPMX20_01800at 1894.110 kb on + strand, within MPMX20_01800at 1894.255 kb on + strand, within MPMX20_01800at 1894.263 kb on - strand, within MPMX20_01800at 1894.362 kb on - strand, within MPMX20_01800at 1894.446 kb on - strandat 1894.498 kb on - strandat 1894.509 kb on + strandat 1894.514 kb on + strandat 1894.615 kb on + strand, within MPMX20_01801at 1894.623 kb on - strand, within MPMX20_01801at 1894.708 kb on - strand, within MPMX20_01801at 1894.805 kb on - strand, within MPMX20_01801at 1894.810 kb on + strand, within MPMX20_01801at 1895.002 kb on + strand, within MPMX20_01801at 1895.092 kb on + strand, within MPMX20_01801at 1895.092 kb on + strand, within MPMX20_01801at 1895.100 kb on - strand, within MPMX20_01801at 1895.107 kb on + strand, within MPMX20_01801at 1895.110 kb on - strand, within MPMX20_01801at 1895.144 kb on + strand, within MPMX20_01801at 1895.157 kb on - strand, within MPMX20_01801at 1895.210 kb on - strand, within MPMX20_01801at 1895.261 kb on + strandat 1895.266 kb on + strandat 1895.266 kb on + strandat 1895.266 kb on + strandat 1895.269 kb on - strandat 1895.269 kb on - strandat 1895.269 kb on - strandat 1895.269 kb on - strandat 1895.274 kb on - strandat 1895.299 kb on + strandat 1895.316 kb on + strandat 1895.436 kb on + strandat 1895.502 kb on - strandat 1895.626 kb on - strand, within MPMX20_01802at 1895.626 kb on - strand, within MPMX20_01802at 1895.696 kb on + strand, within MPMX20_01802at 1895.696 kb on + strand, within MPMX20_01802at 1895.701 kb on + strand, within MPMX20_01802at 1895.704 kb on - strand, within MPMX20_01802at 1895.734 kb on - strand, within MPMX20_01802at 1895.734 kb on - strand, within MPMX20_01802at 1895.820 kb on + strand, within MPMX20_01802at 1895.881 kb on + strand, within MPMX20_01802at 1895.881 kb on + strand, within MPMX20_01802at 1895.934 kb on + strand, within MPMX20_01802at 1896.076 kb on + strand, within MPMX20_01802at 1896.081 kb on + strand, within MPMX20_01802at 1896.111 kb on - strand, within MPMX20_01802at 1896.152 kb on - strand, within MPMX20_01802at 1896.176 kb on + strand, within MPMX20_01802at 1896.186 kb on + strand, within MPMX20_01802at 1896.191 kb on + strand, within MPMX20_01802at 1896.201 kb on + strand, within MPMX20_01802at 1896.204 kb on - strand, within MPMX20_01802

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, Mixed culture; Streptomyces ossamyceticus SAI_001 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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1,893,601 + -0.7
1,893,735 + MPMX20_01800 0.18 -1.2
1,893,743 - MPMX20_01800 0.19 -0.2
1,893,786 + MPMX20_01800 0.24 -0.3
1,893,842 + MPMX20_01800 0.30 +2.5
1,893,854 + MPMX20_01800 0.31 -1.5
1,893,862 - MPMX20_01800 0.32 -1.6
1,893,902 + MPMX20_01800 0.36 -1.5
1,893,966 + MPMX20_01800 0.43 -1.8
1,893,974 - MPMX20_01800 0.44 -0.7
1,893,974 - MPMX20_01800 0.44 -0.0
1,894,013 + MPMX20_01800 0.49 -1.7
1,894,019 + MPMX20_01800 0.49 +0.7
1,894,086 + MPMX20_01800 0.57 -0.2
1,894,089 - MPMX20_01800 0.57 -0.9
1,894,110 + MPMX20_01800 0.59 +0.7
1,894,255 + MPMX20_01800 0.75 -0.6
1,894,263 - MPMX20_01800 0.76 -0.2
1,894,362 - MPMX20_01800 0.87 -1.1
1,894,446 - -1.2
1,894,498 - -0.3
1,894,509 + -0.2
1,894,514 + -1.1
1,894,615 + MPMX20_01801 0.14 -1.7
1,894,623 - MPMX20_01801 0.15 -1.9
1,894,708 - MPMX20_01801 0.26 -0.1
1,894,805 - MPMX20_01801 0.38 -0.5
1,894,810 + MPMX20_01801 0.38 +0.2
1,895,002 + MPMX20_01801 0.62 -0.1
1,895,092 + MPMX20_01801 0.73 -2.7
1,895,092 + MPMX20_01801 0.73 -1.1
1,895,100 - MPMX20_01801 0.73 -1.2
1,895,107 + MPMX20_01801 0.74 -2.3
1,895,110 - MPMX20_01801 0.75 +1.8
1,895,144 + MPMX20_01801 0.79 -0.3
1,895,157 - MPMX20_01801 0.80 -2.6
1,895,210 - MPMX20_01801 0.87 -1.3
1,895,261 + -0.6
1,895,266 + +0.2
1,895,266 + +1.1
1,895,266 + -0.6
1,895,269 - -1.8
1,895,269 - +0.1
1,895,269 - -0.2
1,895,269 - -0.7
1,895,274 - -1.3
1,895,299 + -1.3
1,895,316 + -1.0
1,895,436 + +0.1
1,895,502 - +1.8
1,895,626 - MPMX20_01802 0.14 -0.4
1,895,626 - MPMX20_01802 0.14 -0.9
1,895,696 + MPMX20_01802 0.17 -0.2
1,895,696 + MPMX20_01802 0.17 -1.5
1,895,701 + MPMX20_01802 0.17 -1.5
1,895,704 - MPMX20_01802 0.18 -1.5
1,895,734 - MPMX20_01802 0.19 -0.6
1,895,734 - MPMX20_01802 0.19 +0.3
1,895,820 + MPMX20_01802 0.24 -0.2
1,895,881 + MPMX20_01802 0.27 -1.3
1,895,881 + MPMX20_01802 0.27 -0.3
1,895,934 + MPMX20_01802 0.30 -0.9
1,896,076 + MPMX20_01802 0.37 -2.7
1,896,081 + MPMX20_01802 0.37 -0.9
1,896,111 - MPMX20_01802 0.39 -1.3
1,896,152 - MPMX20_01802 0.41 -1.2
1,896,176 + MPMX20_01802 0.42 -0.4
1,896,186 + MPMX20_01802 0.43 -0.3
1,896,191 + MPMX20_01802 0.43 -1.8
1,896,201 + MPMX20_01802 0.43 -0.7
1,896,204 - MPMX20_01802 0.43 -0.5

Or see this region's nucleotide sequence