Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01082

Experiment: TSB plate, Mixed culture; Streptomyces ossamyceticus SAI_001 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01081 and MPMX20_01082 are separated by 89 nucleotidesMPMX20_01082 and MPMX20_01083 are separated by 199 nucleotides MPMX20_01081: MPMX20_01081 - Protein UshA, at 1,140,395 to 1,142,047 _01081 MPMX20_01082: MPMX20_01082 - Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK, at 1,142,137 to 1,142,616 _01082 MPMX20_01083: MPMX20_01083 - hypothetical protein, at 1,142,816 to 1,143,610 _01083 Position (kb) 1142 1143Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1141.157 kb on + strand, within MPMX20_01081at 1141.162 kb on + strand, within MPMX20_01081at 1141.162 kb on + strand, within MPMX20_01081at 1141.170 kb on - strand, within MPMX20_01081at 1141.237 kb on - strand, within MPMX20_01081at 1141.341 kb on - strand, within MPMX20_01081at 1141.393 kb on + strand, within MPMX20_01081at 1141.430 kb on - strand, within MPMX20_01081at 1141.446 kb on - strand, within MPMX20_01081at 1141.446 kb on - strand, within MPMX20_01081at 1141.474 kb on - strand, within MPMX20_01081at 1141.483 kb on + strand, within MPMX20_01081at 1141.535 kb on + strand, within MPMX20_01081at 1141.540 kb on + strand, within MPMX20_01081at 1141.611 kb on - strand, within MPMX20_01081at 1141.658 kb on - strand, within MPMX20_01081at 1141.669 kb on - strand, within MPMX20_01081at 1141.713 kb on + strand, within MPMX20_01081at 1141.713 kb on + strand, within MPMX20_01081at 1141.753 kb on - strand, within MPMX20_01081at 1141.884 kb on + strandat 1142.026 kb on + strandat 1142.052 kb on + strandat 1142.074 kb on + strandat 1142.108 kb on + strandat 1142.113 kb on + strandat 1142.192 kb on + strand, within MPMX20_01082at 1142.192 kb on + strand, within MPMX20_01082at 1142.202 kb on + strand, within MPMX20_01082at 1142.202 kb on + strand, within MPMX20_01082at 1142.202 kb on + strand, within MPMX20_01082at 1142.210 kb on - strand, within MPMX20_01082at 1142.210 kb on - strand, within MPMX20_01082at 1142.210 kb on - strand, within MPMX20_01082at 1142.210 kb on - strand, within MPMX20_01082at 1142.264 kb on + strand, within MPMX20_01082at 1142.304 kb on + strand, within MPMX20_01082at 1142.312 kb on - strand, within MPMX20_01082at 1142.357 kb on + strand, within MPMX20_01082at 1142.392 kb on - strand, within MPMX20_01082at 1142.502 kb on + strand, within MPMX20_01082at 1142.502 kb on + strand, within MPMX20_01082at 1142.611 kb on + strandat 1142.619 kb on - strandat 1142.619 kb on - strandat 1142.624 kb on - strandat 1142.647 kb on - strandat 1142.653 kb on + strandat 1142.658 kb on + strandat 1142.661 kb on - strandat 1142.666 kb on - strandat 1142.871 kb on - strandat 1142.899 kb on + strand, within MPMX20_01083at 1142.899 kb on + strand, within MPMX20_01083at 1142.934 kb on + strand, within MPMX20_01083at 1142.944 kb on - strand, within MPMX20_01083at 1143.219 kb on - strand, within MPMX20_01083at 1143.276 kb on + strand, within MPMX20_01083at 1143.280 kb on - strand, within MPMX20_01083at 1143.296 kb on + strand, within MPMX20_01083at 1143.304 kb on - strand, within MPMX20_01083at 1143.304 kb on - strand, within MPMX20_01083at 1143.345 kb on + strand, within MPMX20_01083at 1143.359 kb on - strand, within MPMX20_01083at 1143.468 kb on + strand, within MPMX20_01083at 1143.468 kb on + strand, within MPMX20_01083at 1143.476 kb on - strand, within MPMX20_01083at 1143.476 kb on - strand, within MPMX20_01083at 1143.476 kb on - strand, within MPMX20_01083at 1143.497 kb on + strand, within MPMX20_01083at 1143.505 kb on + strand, within MPMX20_01083at 1143.505 kb on + strand, within MPMX20_01083at 1143.506 kb on - strand, within MPMX20_01083at 1143.512 kb on - strand, within MPMX20_01083at 1143.571 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, Mixed culture; Streptomyces ossamyceticus SAI_001 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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1,141,157 + MPMX20_01081 0.46 +0.1
1,141,162 + MPMX20_01081 0.46 -0.7
1,141,162 + MPMX20_01081 0.46 +0.9
1,141,170 - MPMX20_01081 0.47 +2.0
1,141,237 - MPMX20_01081 0.51 -0.1
1,141,341 - MPMX20_01081 0.57 +0.1
1,141,393 + MPMX20_01081 0.60 +0.4
1,141,430 - MPMX20_01081 0.63 -1.1
1,141,446 - MPMX20_01081 0.64 -1.9
1,141,446 - MPMX20_01081 0.64 -0.6
1,141,474 - MPMX20_01081 0.65 -0.6
1,141,483 + MPMX20_01081 0.66 +1.1
1,141,535 + MPMX20_01081 0.69 +0.3
1,141,540 + MPMX20_01081 0.69 -2.2
1,141,611 - MPMX20_01081 0.74 -2.3
1,141,658 - MPMX20_01081 0.76 -0.1
1,141,669 - MPMX20_01081 0.77 -2.0
1,141,713 + MPMX20_01081 0.80 +1.1
1,141,713 + MPMX20_01081 0.80 +0.7
1,141,753 - MPMX20_01081 0.82 -0.6
1,141,884 + -1.0
1,142,026 + -0.3
1,142,052 + -0.8
1,142,074 + +0.2
1,142,108 + -1.3
1,142,113 + -2.1
1,142,192 + MPMX20_01082 0.11 -0.5
1,142,192 + MPMX20_01082 0.11 -0.1
1,142,202 + MPMX20_01082 0.14 -0.8
1,142,202 + MPMX20_01082 0.14 +0.1
1,142,202 + MPMX20_01082 0.14 -0.8
1,142,210 - MPMX20_01082 0.15 +0.7
1,142,210 - MPMX20_01082 0.15 +1.4
1,142,210 - MPMX20_01082 0.15 -0.9
1,142,210 - MPMX20_01082 0.15 +0.4
1,142,264 + MPMX20_01082 0.26 -0.2
1,142,304 + MPMX20_01082 0.35 -1.1
1,142,312 - MPMX20_01082 0.36 -0.7
1,142,357 + MPMX20_01082 0.46 -0.3
1,142,392 - MPMX20_01082 0.53 +0.7
1,142,502 + MPMX20_01082 0.76 -0.5
1,142,502 + MPMX20_01082 0.76 -1.2
1,142,611 + +1.1
1,142,619 - -0.1
1,142,619 - +0.0
1,142,624 - -0.5
1,142,647 - +0.4
1,142,653 + -0.9
1,142,658 + -0.1
1,142,661 - -1.7
1,142,666 - -0.7
1,142,871 - -1.6
1,142,899 + MPMX20_01083 0.10 -0.3
1,142,899 + MPMX20_01083 0.10 -0.1
1,142,934 + MPMX20_01083 0.15 +0.1
1,142,944 - MPMX20_01083 0.16 +1.1
1,143,219 - MPMX20_01083 0.51 -0.5
1,143,276 + MPMX20_01083 0.58 +0.4
1,143,280 - MPMX20_01083 0.58 +3.6
1,143,296 + MPMX20_01083 0.60 -0.6
1,143,304 - MPMX20_01083 0.61 +0.1
1,143,304 - MPMX20_01083 0.61 +0.4
1,143,345 + MPMX20_01083 0.67 -0.8
1,143,359 - MPMX20_01083 0.68 +0.4
1,143,468 + MPMX20_01083 0.82 -1.7
1,143,468 + MPMX20_01083 0.82 +2.3
1,143,476 - MPMX20_01083 0.83 -1.2
1,143,476 - MPMX20_01083 0.83 -0.6
1,143,476 - MPMX20_01083 0.83 -1.1
1,143,497 + MPMX20_01083 0.86 -0.4
1,143,505 + MPMX20_01083 0.87 +0.6
1,143,505 + MPMX20_01083 0.87 +1.9
1,143,506 - MPMX20_01083 0.87 -0.4
1,143,512 - MPMX20_01083 0.88 +0.5
1,143,571 - +1.7

Or see this region's nucleotide sequence