Experiment: TSB plate, Mixed culture; Streptomyces ossamyceticus SAI_001 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01081 and MPMX20_01082 are separated by 89 nucleotides MPMX20_01082 and MPMX20_01083 are separated by 199 nucleotides
MPMX20_01081: MPMX20_01081 - Protein UshA, at 1,140,395 to 1,142,047
_01081
MPMX20_01082: MPMX20_01082 - Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK, at 1,142,137 to 1,142,616
_01082
MPMX20_01083: MPMX20_01083 - hypothetical protein, at 1,142,816 to 1,143,610
_01083
Position (kb)
1142
1143 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1141.157 kb on + strand, within MPMX20_01081 at 1141.162 kb on + strand, within MPMX20_01081 at 1141.162 kb on + strand, within MPMX20_01081 at 1141.170 kb on - strand, within MPMX20_01081 at 1141.237 kb on - strand, within MPMX20_01081 at 1141.341 kb on - strand, within MPMX20_01081 at 1141.393 kb on + strand, within MPMX20_01081 at 1141.430 kb on - strand, within MPMX20_01081 at 1141.446 kb on - strand, within MPMX20_01081 at 1141.446 kb on - strand, within MPMX20_01081 at 1141.474 kb on - strand, within MPMX20_01081 at 1141.483 kb on + strand, within MPMX20_01081 at 1141.535 kb on + strand, within MPMX20_01081 at 1141.540 kb on + strand, within MPMX20_01081 at 1141.611 kb on - strand, within MPMX20_01081 at 1141.658 kb on - strand, within MPMX20_01081 at 1141.669 kb on - strand, within MPMX20_01081 at 1141.713 kb on + strand, within MPMX20_01081 at 1141.713 kb on + strand, within MPMX20_01081 at 1141.753 kb on - strand, within MPMX20_01081 at 1141.884 kb on + strand at 1142.026 kb on + strand at 1142.052 kb on + strand at 1142.074 kb on + strand at 1142.108 kb on + strand at 1142.113 kb on + strand at 1142.192 kb on + strand, within MPMX20_01082 at 1142.192 kb on + strand, within MPMX20_01082 at 1142.202 kb on + strand, within MPMX20_01082 at 1142.202 kb on + strand, within MPMX20_01082 at 1142.202 kb on + strand, within MPMX20_01082 at 1142.210 kb on - strand, within MPMX20_01082 at 1142.210 kb on - strand, within MPMX20_01082 at 1142.210 kb on - strand, within MPMX20_01082 at 1142.210 kb on - strand, within MPMX20_01082 at 1142.264 kb on + strand, within MPMX20_01082 at 1142.304 kb on + strand, within MPMX20_01082 at 1142.312 kb on - strand, within MPMX20_01082 at 1142.357 kb on + strand, within MPMX20_01082 at 1142.392 kb on - strand, within MPMX20_01082 at 1142.502 kb on + strand, within MPMX20_01082 at 1142.502 kb on + strand, within MPMX20_01082 at 1142.611 kb on + strand at 1142.619 kb on - strand at 1142.619 kb on - strand at 1142.624 kb on - strand at 1142.647 kb on - strand at 1142.653 kb on + strand at 1142.658 kb on + strand at 1142.661 kb on - strand at 1142.666 kb on - strand at 1142.871 kb on - strand at 1142.899 kb on + strand, within MPMX20_01083 at 1142.899 kb on + strand, within MPMX20_01083 at 1142.934 kb on + strand, within MPMX20_01083 at 1142.944 kb on - strand, within MPMX20_01083 at 1143.219 kb on - strand, within MPMX20_01083 at 1143.276 kb on + strand, within MPMX20_01083 at 1143.280 kb on - strand, within MPMX20_01083 at 1143.296 kb on + strand, within MPMX20_01083 at 1143.304 kb on - strand, within MPMX20_01083 at 1143.304 kb on - strand, within MPMX20_01083 at 1143.345 kb on + strand, within MPMX20_01083 at 1143.359 kb on - strand, within MPMX20_01083 at 1143.468 kb on + strand, within MPMX20_01083 at 1143.468 kb on + strand, within MPMX20_01083 at 1143.476 kb on - strand, within MPMX20_01083 at 1143.476 kb on - strand, within MPMX20_01083 at 1143.476 kb on - strand, within MPMX20_01083 at 1143.497 kb on + strand, within MPMX20_01083 at 1143.505 kb on + strand, within MPMX20_01083 at 1143.505 kb on + strand, within MPMX20_01083 at 1143.506 kb on - strand, within MPMX20_01083 at 1143.512 kb on - strand, within MPMX20_01083 at 1143.571 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, Mixed culture; Streptomyces ossamyceticus SAI_001 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 1,141,157 + MPMX20_01081 0.46 +0.1 1,141,162 + MPMX20_01081 0.46 -0.7 1,141,162 + MPMX20_01081 0.46 +0.9 1,141,170 - MPMX20_01081 0.47 +2.0 1,141,237 - MPMX20_01081 0.51 -0.1 1,141,341 - MPMX20_01081 0.57 +0.1 1,141,393 + MPMX20_01081 0.60 +0.4 1,141,430 - MPMX20_01081 0.63 -1.1 1,141,446 - MPMX20_01081 0.64 -1.9 1,141,446 - MPMX20_01081 0.64 -0.6 1,141,474 - MPMX20_01081 0.65 -0.6 1,141,483 + MPMX20_01081 0.66 +1.1 1,141,535 + MPMX20_01081 0.69 +0.3 1,141,540 + MPMX20_01081 0.69 -2.2 1,141,611 - MPMX20_01081 0.74 -2.3 1,141,658 - MPMX20_01081 0.76 -0.1 1,141,669 - MPMX20_01081 0.77 -2.0 1,141,713 + MPMX20_01081 0.80 +1.1 1,141,713 + MPMX20_01081 0.80 +0.7 1,141,753 - MPMX20_01081 0.82 -0.6 1,141,884 + -1.0 1,142,026 + -0.3 1,142,052 + -0.8 1,142,074 + +0.2 1,142,108 + -1.3 1,142,113 + -2.1 1,142,192 + MPMX20_01082 0.11 -0.5 1,142,192 + MPMX20_01082 0.11 -0.1 1,142,202 + MPMX20_01082 0.14 -0.8 1,142,202 + MPMX20_01082 0.14 +0.1 1,142,202 + MPMX20_01082 0.14 -0.8 1,142,210 - MPMX20_01082 0.15 +0.7 1,142,210 - MPMX20_01082 0.15 +1.4 1,142,210 - MPMX20_01082 0.15 -0.9 1,142,210 - MPMX20_01082 0.15 +0.4 1,142,264 + MPMX20_01082 0.26 -0.2 1,142,304 + MPMX20_01082 0.35 -1.1 1,142,312 - MPMX20_01082 0.36 -0.7 1,142,357 + MPMX20_01082 0.46 -0.3 1,142,392 - MPMX20_01082 0.53 +0.7 1,142,502 + MPMX20_01082 0.76 -0.5 1,142,502 + MPMX20_01082 0.76 -1.2 1,142,611 + +1.1 1,142,619 - -0.1 1,142,619 - +0.0 1,142,624 - -0.5 1,142,647 - +0.4 1,142,653 + -0.9 1,142,658 + -0.1 1,142,661 - -1.7 1,142,666 - -0.7 1,142,871 - -1.6 1,142,899 + MPMX20_01083 0.10 -0.3 1,142,899 + MPMX20_01083 0.10 -0.1 1,142,934 + MPMX20_01083 0.15 +0.1 1,142,944 - MPMX20_01083 0.16 +1.1 1,143,219 - MPMX20_01083 0.51 -0.5 1,143,276 + MPMX20_01083 0.58 +0.4 1,143,280 - MPMX20_01083 0.58 +3.6 1,143,296 + MPMX20_01083 0.60 -0.6 1,143,304 - MPMX20_01083 0.61 +0.1 1,143,304 - MPMX20_01083 0.61 +0.4 1,143,345 + MPMX20_01083 0.67 -0.8 1,143,359 - MPMX20_01083 0.68 +0.4 1,143,468 + MPMX20_01083 0.82 -1.7 1,143,468 + MPMX20_01083 0.82 +2.3 1,143,476 - MPMX20_01083 0.83 -1.2 1,143,476 - MPMX20_01083 0.83 -0.6 1,143,476 - MPMX20_01083 0.83 -1.1 1,143,497 + MPMX20_01083 0.86 -0.4 1,143,505 + MPMX20_01083 0.87 +0.6 1,143,505 + MPMX20_01083 0.87 +1.9 1,143,506 - MPMX20_01083 0.87 -0.4 1,143,512 - MPMX20_01083 0.88 +0.5 1,143,571 - +1.7
Or see this region's nucleotide sequence