Experiment: 0.1X LB plate, Mixed culture; Bacillus pumilus TBS_065 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04134 and MPMX20_04135 are separated by 15 nucleotides MPMX20_04135 and MPMX20_04136 are separated by 289 nucleotides MPMX20_04136 and MPMX20_04137 are separated by 189 nucleotides MPMX20_04137 and MPMX20_04138 are separated by 169 nucleotides
MPMX20_04134: MPMX20_04134 - 30S ribosomal protein S9, at 4,334,841 to 4,335,233
_04134
MPMX20_04135: MPMX20_04135 - 50S ribosomal protein L13, at 4,335,249 to 4,335,677
_04135
MPMX20_04136: MPMX20_04136 - Cell division protein ZapE, at 4,335,967 to 4,337,091
_04136
MPMX20_04137: MPMX20_04137 - Inner membrane protein YhcB, at 4,337,281 to 4,337,679
_04137
MPMX20_04138: MPMX20_04138 - Periplasmic pH-dependent serine endoprotease DegQ, at 4,337,849 to 4,339,216
_04138
Position (kb)
4335
4336
4337
4338 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4335.926 kb on + strand at 4335.931 kb on + strand at 4335.938 kb on + strand at 4335.950 kb on - strand at 4335.960 kb on - strand at 4335.960 kb on - strand at 4335.984 kb on + strand at 4335.984 kb on + strand at 4336.058 kb on + strand at 4336.058 kb on + strand at 4336.058 kb on + strand at 4336.058 kb on + strand at 4336.066 kb on - strand at 4336.066 kb on - strand at 4336.066 kb on - strand at 4336.066 kb on - strand at 4336.066 kb on - strand at 4336.066 kb on - strand at 4336.066 kb on - strand at 4336.072 kb on + strand at 4336.101 kb on + strand, within MPMX20_04136 at 4336.165 kb on - strand, within MPMX20_04136 at 4336.167 kb on - strand, within MPMX20_04136 at 4336.192 kb on - strand, within MPMX20_04136 at 4336.194 kb on + strand, within MPMX20_04136 at 4336.248 kb on + strand, within MPMX20_04136 at 4336.248 kb on + strand, within MPMX20_04136 at 4336.256 kb on - strand, within MPMX20_04136 at 4336.271 kb on - strand, within MPMX20_04136 at 4336.298 kb on + strand, within MPMX20_04136 at 4336.304 kb on - strand, within MPMX20_04136 at 4336.320 kb on + strand, within MPMX20_04136 at 4336.333 kb on - strand, within MPMX20_04136 at 4336.404 kb on + strand, within MPMX20_04136 at 4336.494 kb on + strand, within MPMX20_04136 at 4336.531 kb on + strand, within MPMX20_04136 at 4336.539 kb on - strand, within MPMX20_04136 at 4336.539 kb on - strand, within MPMX20_04136 at 4336.539 kb on - strand, within MPMX20_04136 at 4336.539 kb on - strand, within MPMX20_04136 at 4336.584 kb on + strand, within MPMX20_04136 at 4336.584 kb on + strand, within MPMX20_04136 at 4336.584 kb on + strand, within MPMX20_04136 at 4336.584 kb on + strand, within MPMX20_04136 at 4336.584 kb on + strand, within MPMX20_04136 at 4336.586 kb on - strand, within MPMX20_04136 at 4336.592 kb on - strand, within MPMX20_04136 at 4336.607 kb on + strand, within MPMX20_04136 at 4336.607 kb on + strand, within MPMX20_04136 at 4336.615 kb on - strand, within MPMX20_04136 at 4336.672 kb on + strand, within MPMX20_04136 at 4336.680 kb on - strand, within MPMX20_04136 at 4336.696 kb on - strand, within MPMX20_04136 at 4336.697 kb on - strand, within MPMX20_04136 at 4336.739 kb on + strand, within MPMX20_04136 at 4336.791 kb on + strand, within MPMX20_04136 at 4336.791 kb on + strand, within MPMX20_04136 at 4336.791 kb on + strand, within MPMX20_04136 at 4336.791 kb on + strand, within MPMX20_04136 at 4336.791 kb on + strand, within MPMX20_04136 at 4336.791 kb on + strand, within MPMX20_04136 at 4336.799 kb on - strand, within MPMX20_04136 at 4336.799 kb on - strand, within MPMX20_04136 at 4336.799 kb on - strand, within MPMX20_04136 at 4336.866 kb on - strand, within MPMX20_04136 at 4336.884 kb on + strand, within MPMX20_04136 at 4336.921 kb on + strand, within MPMX20_04136 at 4336.921 kb on + strand, within MPMX20_04136 at 4336.926 kb on + strand, within MPMX20_04136 at 4336.929 kb on - strand, within MPMX20_04136 at 4336.929 kb on - strand, within MPMX20_04136 at 4336.929 kb on - strand, within MPMX20_04136 at 4336.948 kb on + strand, within MPMX20_04136 at 4337.023 kb on - strand at 4337.036 kb on + strand at 4337.042 kb on - strand at 4337.044 kb on - strand at 4337.046 kb on + strand at 4337.046 kb on + strand at 4337.054 kb on - strand at 4337.125 kb on - strand at 4337.154 kb on + strand at 4337.154 kb on + strand at 4337.154 kb on + strand at 4337.154 kb on + strand at 4337.154 kb on + strand at 4337.154 kb on + strand at 4337.162 kb on - strand at 4337.162 kb on - strand at 4337.162 kb on - strand at 4337.162 kb on - strand at 4337.177 kb on - strand at 4337.183 kb on + strand at 4337.188 kb on - strand at 4337.229 kb on + strand at 4337.229 kb on + strand at 4337.229 kb on + strand at 4337.229 kb on + strand at 4337.229 kb on + strand at 4337.229 kb on + strand at 4337.229 kb on + strand at 4337.229 kb on + strand at 4337.229 kb on + strand at 4337.229 kb on + strand at 4337.229 kb on + strand at 4337.229 kb on + strand at 4337.229 kb on + strand at 4337.229 kb on + strand at 4337.237 kb on - strand at 4337.237 kb on - strand at 4337.237 kb on - strand at 4337.237 kb on - strand at 4337.237 kb on - strand at 4337.240 kb on + strand at 4337.249 kb on - strand at 4337.256 kb on - strand at 4337.258 kb on + strand at 4337.258 kb on - strand at 4337.258 kb on - strand at 4337.266 kb on - strand at 4337.285 kb on + strand at 4337.285 kb on - strand at 4337.293 kb on - strand at 4337.345 kb on - strand, within MPMX20_04137 at 4337.380 kb on + strand, within MPMX20_04137 at 4337.380 kb on + strand, within MPMX20_04137 at 4337.400 kb on + strand, within MPMX20_04137 at 4337.408 kb on - strand, within MPMX20_04137 at 4337.426 kb on + strand, within MPMX20_04137 at 4337.431 kb on + strand, within MPMX20_04137 at 4337.444 kb on + strand, within MPMX20_04137 at 4337.497 kb on - strand, within MPMX20_04137 at 4337.611 kb on + strand, within MPMX20_04137 at 4337.611 kb on + strand, within MPMX20_04137 at 4337.619 kb on - strand, within MPMX20_04137 at 4337.709 kb on + strand at 4337.709 kb on + strand at 4337.758 kb on + strand at 4337.766 kb on - strand at 4337.768 kb on + strand at 4337.869 kb on + strand at 4337.882 kb on - strand at 4337.885 kb on - strand at 4337.889 kb on + strand at 4337.889 kb on + strand at 4337.889 kb on + strand at 4337.897 kb on - strand at 4337.950 kb on + strand at 4338.019 kb on + strand, within MPMX20_04138 at 4338.027 kb on - strand, within MPMX20_04138 at 4338.053 kb on + strand, within MPMX20_04138
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Bacillus pumilus TBS_065 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 4,335,926 + -3.0 4,335,931 + +0.3 4,335,938 + -1.9 4,335,950 - +1.2 4,335,960 - +2.8 4,335,960 - +1.2 4,335,984 + +1.2 4,335,984 + +1.6 4,336,058 + +0.5 4,336,058 + -1.0 4,336,058 + -1.6 4,336,058 + -2.5 4,336,066 - -0.2 4,336,066 - -1.9 4,336,066 - -0.2 4,336,066 - +0.5 4,336,066 - +0.8 4,336,066 - -0.0 4,336,066 - +0.2 4,336,072 + -0.2 4,336,101 + MPMX20_04136 0.12 +0.2 4,336,165 - MPMX20_04136 0.18 -0.5 4,336,167 - MPMX20_04136 0.18 -2.7 4,336,192 - MPMX20_04136 0.20 -0.4 4,336,194 + MPMX20_04136 0.20 -1.1 4,336,248 + MPMX20_04136 0.25 -0.7 4,336,248 + MPMX20_04136 0.25 -1.3 4,336,256 - MPMX20_04136 0.26 +1.8 4,336,271 - MPMX20_04136 0.27 +0.2 4,336,298 + MPMX20_04136 0.29 -0.8 4,336,304 - MPMX20_04136 0.30 -1.5 4,336,320 + MPMX20_04136 0.31 -2.0 4,336,333 - MPMX20_04136 0.33 -0.0 4,336,404 + MPMX20_04136 0.39 +2.8 4,336,494 + MPMX20_04136 0.47 -1.3 4,336,531 + MPMX20_04136 0.50 -0.5 4,336,539 - MPMX20_04136 0.51 -0.0 4,336,539 - MPMX20_04136 0.51 -1.9 4,336,539 - MPMX20_04136 0.51 -0.8 4,336,539 - MPMX20_04136 0.51 -0.8 4,336,584 + MPMX20_04136 0.55 +1.2 4,336,584 + MPMX20_04136 0.55 +0.6 4,336,584 + MPMX20_04136 0.55 -2.9 4,336,584 + MPMX20_04136 0.55 -1.2 4,336,584 + MPMX20_04136 0.55 +0.2 4,336,586 - MPMX20_04136 0.55 -1.3 4,336,592 - MPMX20_04136 0.56 -0.4 4,336,607 + MPMX20_04136 0.57 -0.9 4,336,607 + MPMX20_04136 0.57 -0.9 4,336,615 - MPMX20_04136 0.58 -1.3 4,336,672 + MPMX20_04136 0.63 +0.5 4,336,680 - MPMX20_04136 0.63 -2.2 4,336,696 - MPMX20_04136 0.65 -0.4 4,336,697 - MPMX20_04136 0.65 -2.3 4,336,739 + MPMX20_04136 0.69 -1.8 4,336,791 + MPMX20_04136 0.73 -0.7 4,336,791 + MPMX20_04136 0.73 -1.8 4,336,791 + MPMX20_04136 0.73 -1.6 4,336,791 + MPMX20_04136 0.73 -2.4 4,336,791 + MPMX20_04136 0.73 -1.5 4,336,791 + MPMX20_04136 0.73 +1.5 4,336,799 - MPMX20_04136 0.74 +1.2 4,336,799 - MPMX20_04136 0.74 -1.5 4,336,799 - MPMX20_04136 0.74 -1.3 4,336,866 - MPMX20_04136 0.80 +1.0 4,336,884 + MPMX20_04136 0.82 -2.5 4,336,921 + MPMX20_04136 0.85 +1.0 4,336,921 + MPMX20_04136 0.85 -0.5 4,336,926 + MPMX20_04136 0.85 -1.5 4,336,929 - MPMX20_04136 0.86 +1.0 4,336,929 - MPMX20_04136 0.86 -0.4 4,336,929 - MPMX20_04136 0.86 +0.8 4,336,948 + MPMX20_04136 0.87 -0.6 4,337,023 - -0.2 4,337,036 + -1.1 4,337,042 - -2.3 4,337,044 - -2.1 4,337,046 + +1.8 4,337,046 + -1.6 4,337,054 - +0.2 4,337,125 - -0.5 4,337,154 + -1.3 4,337,154 + +1.8 4,337,154 + -1.9 4,337,154 + -0.5 4,337,154 + +0.5 4,337,154 + -0.3 4,337,162 - -0.7 4,337,162 - -0.3 4,337,162 - -0.0 4,337,162 - -0.7 4,337,177 - -0.8 4,337,183 + +1.2 4,337,188 - -2.7 4,337,229 + -1.7 4,337,229 + -1.3 4,337,229 + +1.8 4,337,229 + +0.5 4,337,229 + -1.4 4,337,229 + -0.0 4,337,229 + +0.6 4,337,229 + +1.3 4,337,229 + +0.8 4,337,229 + -2.2 4,337,229 + -0.3 4,337,229 + -0.6 4,337,229 + +0.2 4,337,229 + -0.0 4,337,237 - -1.5 4,337,237 - -1.9 4,337,237 - -2.5 4,337,237 - -1.0 4,337,237 - +0.5 4,337,240 + +0.0 4,337,249 - -1.7 4,337,256 - +0.3 4,337,258 + -0.0 4,337,258 - -0.2 4,337,258 - +2.8 4,337,266 - -0.0 4,337,285 + -2.0 4,337,285 - -1.2 4,337,293 - -0.1 4,337,345 - MPMX20_04137 0.16 -1.6 4,337,380 + MPMX20_04137 0.25 +0.8 4,337,380 + MPMX20_04137 0.25 -0.0 4,337,400 + MPMX20_04137 0.30 -0.9 4,337,408 - MPMX20_04137 0.32 -1.0 4,337,426 + MPMX20_04137 0.36 +0.2 4,337,431 + MPMX20_04137 0.38 +0.2 4,337,444 + MPMX20_04137 0.41 +2.8 4,337,497 - MPMX20_04137 0.54 -1.0 4,337,611 + MPMX20_04137 0.83 +0.5 4,337,611 + MPMX20_04137 0.83 -0.7 4,337,619 - MPMX20_04137 0.85 -2.1 4,337,709 + -0.1 4,337,709 + -1.7 4,337,758 + +0.2 4,337,766 - +1.8 4,337,768 + -0.9 4,337,869 + -0.2 4,337,882 - -0.9 4,337,885 - -0.8 4,337,889 + +0.5 4,337,889 + -1.1 4,337,889 + -1.7 4,337,897 - -1.5 4,337,950 + +1.0 4,338,019 + MPMX20_04138 0.12 -1.2 4,338,027 - MPMX20_04138 0.13 +0.2 4,338,053 + MPMX20_04138 0.15 +0.8
Or see this region's nucleotide sequence