Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01436

Experiment: 0.1X LB plate, Mixed culture; Bacillus pumilus TBS_065 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01434 and MPMX20_01435 are separated by 117 nucleotidesMPMX20_01435 and MPMX20_01436 are separated by 243 nucleotidesMPMX20_01436 and MPMX20_01437 are separated by 46 nucleotides MPMX20_01434: MPMX20_01434 - putative protein YbiI, at 1,498,835 to 1,499,101 _01434 MPMX20_01435: MPMX20_01435 - putative protein McbA, at 1,499,219 to 1,499,485 _01435 MPMX20_01436: MPMX20_01436 - Ribosomal RNA large subunit methyltransferase F, at 1,499,729 to 1,500,640 _01436 MPMX20_01437: MPMX20_01437 - Moderate conductance mechanosensitive channel YbiO, at 1,500,687 to 1,502,897 _01437 Position (kb) 1499 1500 1501Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1498.799 kb on - strandat 1498.868 kb on + strand, within MPMX20_01434at 1498.952 kb on - strand, within MPMX20_01434at 1498.952 kb on - strand, within MPMX20_01434at 1498.989 kb on - strand, within MPMX20_01434at 1499.098 kb on - strandat 1499.102 kb on + strandat 1499.108 kb on + strandat 1499.108 kb on + strandat 1499.110 kb on - strandat 1499.166 kb on - strandat 1499.176 kb on - strandat 1499.178 kb on + strandat 1499.283 kb on + strand, within MPMX20_01435at 1499.283 kb on + strand, within MPMX20_01435at 1499.291 kb on - strand, within MPMX20_01435at 1499.291 kb on - strand, within MPMX20_01435at 1499.321 kb on + strand, within MPMX20_01435at 1499.331 kb on + strand, within MPMX20_01435at 1499.332 kb on + strand, within MPMX20_01435at 1499.373 kb on + strand, within MPMX20_01435at 1499.373 kb on + strand, within MPMX20_01435at 1499.373 kb on + strand, within MPMX20_01435at 1499.373 kb on + strand, within MPMX20_01435at 1499.373 kb on + strand, within MPMX20_01435at 1499.373 kb on + strand, within MPMX20_01435at 1499.373 kb on + strand, within MPMX20_01435at 1499.373 kb on + strand, within MPMX20_01435at 1499.373 kb on + strand, within MPMX20_01435at 1499.373 kb on + strand, within MPMX20_01435at 1499.373 kb on + strand, within MPMX20_01435at 1499.373 kb on + strand, within MPMX20_01435at 1499.381 kb on - strand, within MPMX20_01435at 1499.381 kb on - strand, within MPMX20_01435at 1499.381 kb on - strand, within MPMX20_01435at 1499.381 kb on - strand, within MPMX20_01435at 1499.381 kb on - strand, within MPMX20_01435at 1499.411 kb on - strand, within MPMX20_01435at 1499.469 kb on - strandat 1499.495 kb on - strandat 1499.502 kb on + strandat 1499.542 kb on - strandat 1499.617 kb on + strandat 1499.697 kb on + strandat 1499.703 kb on - strandat 1499.720 kb on - strandat 1499.784 kb on + strandat 1499.803 kb on + strandat 1499.803 kb on + strandat 1499.806 kb on - strandat 1499.811 kb on - strandat 1499.816 kb on + strandat 1499.821 kb on + strand, within MPMX20_01436at 1499.821 kb on + strand, within MPMX20_01436at 1499.829 kb on - strand, within MPMX20_01436at 1499.833 kb on + strand, within MPMX20_01436at 1499.880 kb on + strand, within MPMX20_01436at 1499.895 kb on + strand, within MPMX20_01436at 1499.914 kb on + strand, within MPMX20_01436at 1499.914 kb on + strand, within MPMX20_01436at 1499.914 kb on + strand, within MPMX20_01436at 1499.914 kb on + strand, within MPMX20_01436at 1499.914 kb on + strand, within MPMX20_01436at 1499.914 kb on + strand, within MPMX20_01436at 1499.914 kb on + strand, within MPMX20_01436at 1499.914 kb on + strand, within MPMX20_01436at 1499.914 kb on + strand, within MPMX20_01436at 1499.922 kb on - strand, within MPMX20_01436at 1499.922 kb on - strand, within MPMX20_01436at 1499.922 kb on - strand, within MPMX20_01436at 1499.922 kb on - strand, within MPMX20_01436at 1499.922 kb on - strand, within MPMX20_01436at 1499.922 kb on - strand, within MPMX20_01436at 1500.027 kb on - strand, within MPMX20_01436at 1500.046 kb on - strand, within MPMX20_01436at 1500.082 kb on - strand, within MPMX20_01436at 1500.185 kb on + strand, within MPMX20_01436at 1500.188 kb on - strand, within MPMX20_01436at 1500.193 kb on - strand, within MPMX20_01436at 1500.193 kb on - strand, within MPMX20_01436at 1500.193 kb on - strand, within MPMX20_01436at 1500.217 kb on - strand, within MPMX20_01436at 1500.278 kb on - strand, within MPMX20_01436at 1500.278 kb on - strand, within MPMX20_01436at 1500.278 kb on - strand, within MPMX20_01436at 1500.280 kb on + strand, within MPMX20_01436at 1500.280 kb on + strand, within MPMX20_01436at 1500.280 kb on + strand, within MPMX20_01436at 1500.280 kb on + strand, within MPMX20_01436at 1500.284 kb on + strand, within MPMX20_01436at 1500.288 kb on - strand, within MPMX20_01436at 1500.288 kb on - strand, within MPMX20_01436at 1500.320 kb on - strand, within MPMX20_01436at 1500.363 kb on - strand, within MPMX20_01436at 1500.383 kb on - strand, within MPMX20_01436at 1500.455 kb on + strand, within MPMX20_01436at 1500.455 kb on + strand, within MPMX20_01436at 1500.477 kb on - strand, within MPMX20_01436at 1500.515 kb on + strand, within MPMX20_01436at 1500.517 kb on + strand, within MPMX20_01436at 1500.522 kb on + strand, within MPMX20_01436at 1500.522 kb on + strand, within MPMX20_01436at 1500.522 kb on + strand, within MPMX20_01436at 1500.522 kb on + strand, within MPMX20_01436at 1500.522 kb on + strand, within MPMX20_01436at 1500.525 kb on - strand, within MPMX20_01436at 1500.530 kb on - strand, within MPMX20_01436at 1500.530 kb on - strand, within MPMX20_01436at 1500.587 kb on - strandat 1500.663 kb on - strandat 1500.668 kb on + strandat 1500.693 kb on - strandat 1500.729 kb on + strandat 1500.730 kb on + strandat 1500.737 kb on - strandat 1500.737 kb on - strandat 1500.737 kb on - strandat 1500.738 kb on - strandat 1500.801 kb on - strandat 1500.832 kb on - strandat 1500.857 kb on + strandat 1500.865 kb on - strandat 1500.866 kb on - strandat 1500.902 kb on + strandat 1500.937 kb on + strand, within MPMX20_01437at 1501.012 kb on - strand, within MPMX20_01437at 1501.061 kb on - strand, within MPMX20_01437at 1501.095 kb on + strand, within MPMX20_01437at 1501.095 kb on + strand, within MPMX20_01437at 1501.095 kb on - strand, within MPMX20_01437at 1501.128 kb on + strand, within MPMX20_01437at 1501.166 kb on + strand, within MPMX20_01437at 1501.174 kb on - strand, within MPMX20_01437at 1501.204 kb on - strand, within MPMX20_01437at 1501.260 kb on - strand, within MPMX20_01437at 1501.276 kb on + strand, within MPMX20_01437at 1501.384 kb on - strand, within MPMX20_01437at 1501.384 kb on - strand, within MPMX20_01437at 1501.395 kb on + strand, within MPMX20_01437at 1501.482 kb on + strand, within MPMX20_01437at 1501.532 kb on + strand, within MPMX20_01437at 1501.615 kb on + strand, within MPMX20_01437at 1501.623 kb on - strand, within MPMX20_01437

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Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Bacillus pumilus TBS_065 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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1,498,799 - +1.2
1,498,868 + MPMX20_01434 0.12 +4.4
1,498,952 - MPMX20_01434 0.44 -0.9
1,498,952 - MPMX20_01434 0.44 -1.7
1,498,989 - MPMX20_01434 0.58 -1.0
1,499,098 - +2.2
1,499,102 + -1.1
1,499,108 + -1.0
1,499,108 + +0.0
1,499,110 - -2.6
1,499,166 - -0.2
1,499,176 - +0.8
1,499,178 + +1.2
1,499,283 + MPMX20_01435 0.24 +0.2
1,499,283 + MPMX20_01435 0.24 -0.4
1,499,291 - MPMX20_01435 0.27 +0.4
1,499,291 - MPMX20_01435 0.27 -0.6
1,499,321 + MPMX20_01435 0.38 -2.9
1,499,331 + MPMX20_01435 0.42 +2.8
1,499,332 + MPMX20_01435 0.42 -0.5
1,499,373 + MPMX20_01435 0.58 -1.8
1,499,373 + MPMX20_01435 0.58 +0.8
1,499,373 + MPMX20_01435 0.58 -0.8
1,499,373 + MPMX20_01435 0.58 +1.1
1,499,373 + MPMX20_01435 0.58 +0.1
1,499,373 + MPMX20_01435 0.58 -1.7
1,499,373 + MPMX20_01435 0.58 +0.2
1,499,373 + MPMX20_01435 0.58 -0.8
1,499,373 + MPMX20_01435 0.58 -0.8
1,499,373 + MPMX20_01435 0.58 -1.5
1,499,373 + MPMX20_01435 0.58 -0.9
1,499,373 + MPMX20_01435 0.58 -2.3
1,499,381 - MPMX20_01435 0.61 +1.2
1,499,381 - MPMX20_01435 0.61 +0.6
1,499,381 - MPMX20_01435 0.61 -2.0
1,499,381 - MPMX20_01435 0.61 +0.2
1,499,381 - MPMX20_01435 0.61 -1.6
1,499,411 - MPMX20_01435 0.72 +0.8
1,499,469 - +1.2
1,499,495 - +1.6
1,499,502 + +0.1
1,499,542 - -0.7
1,499,617 + -0.3
1,499,697 + +2.2
1,499,703 - -0.6
1,499,720 - +1.8
1,499,784 + -1.3
1,499,803 + +3.8
1,499,803 + -0.5
1,499,806 - +0.5
1,499,811 - +0.0
1,499,816 + -1.2
1,499,821 + MPMX20_01436 0.10 -3.2
1,499,821 + MPMX20_01436 0.10 -1.0
1,499,829 - MPMX20_01436 0.11 -0.9
1,499,833 + MPMX20_01436 0.11 -0.5
1,499,880 + MPMX20_01436 0.17 -0.9
1,499,895 + MPMX20_01436 0.18 -1.0
1,499,914 + MPMX20_01436 0.20 +0.2
1,499,914 + MPMX20_01436 0.20 -1.0
1,499,914 + MPMX20_01436 0.20 -0.8
1,499,914 + MPMX20_01436 0.20 +1.8
1,499,914 + MPMX20_01436 0.20 -1.5
1,499,914 + MPMX20_01436 0.20 +0.0
1,499,914 + MPMX20_01436 0.20 +0.8
1,499,914 + MPMX20_01436 0.20 -0.8
1,499,914 + MPMX20_01436 0.20 -1.0
1,499,922 - MPMX20_01436 0.21 -0.1
1,499,922 - MPMX20_01436 0.21 -1.2
1,499,922 - MPMX20_01436 0.21 -0.2
1,499,922 - MPMX20_01436 0.21 -1.0
1,499,922 - MPMX20_01436 0.21 -0.5
1,499,922 - MPMX20_01436 0.21 +0.8
1,500,027 - MPMX20_01436 0.33 -1.6
1,500,046 - MPMX20_01436 0.35 -0.9
1,500,082 - MPMX20_01436 0.39 +1.8
1,500,185 + MPMX20_01436 0.50 -1.6
1,500,188 - MPMX20_01436 0.50 -0.5
1,500,193 - MPMX20_01436 0.51 +0.0
1,500,193 - MPMX20_01436 0.51 -0.2
1,500,193 - MPMX20_01436 0.51 -0.1
1,500,217 - MPMX20_01436 0.54 +2.2
1,500,278 - MPMX20_01436 0.60 -2.2
1,500,278 - MPMX20_01436 0.60 -0.2
1,500,278 - MPMX20_01436 0.60 -0.3
1,500,280 + MPMX20_01436 0.60 +2.2
1,500,280 + MPMX20_01436 0.60 -0.3
1,500,280 + MPMX20_01436 0.60 -2.3
1,500,280 + MPMX20_01436 0.60 -1.0
1,500,284 + MPMX20_01436 0.61 -1.2
1,500,288 - MPMX20_01436 0.61 -1.0
1,500,288 - MPMX20_01436 0.61 -0.6
1,500,320 - MPMX20_01436 0.65 +0.4
1,500,363 - MPMX20_01436 0.70 +1.2
1,500,383 - MPMX20_01436 0.72 +1.4
1,500,455 + MPMX20_01436 0.80 -2.0
1,500,455 + MPMX20_01436 0.80 +1.2
1,500,477 - MPMX20_01436 0.82 +0.2
1,500,515 + MPMX20_01436 0.86 +1.5
1,500,517 + MPMX20_01436 0.86 -1.8
1,500,522 + MPMX20_01436 0.87 +1.4
1,500,522 + MPMX20_01436 0.87 +0.3
1,500,522 + MPMX20_01436 0.87 -0.8
1,500,522 + MPMX20_01436 0.87 +0.2
1,500,522 + MPMX20_01436 0.87 -1.2
1,500,525 - MPMX20_01436 0.87 +1.8
1,500,530 - MPMX20_01436 0.88 -1.7
1,500,530 - MPMX20_01436 0.88 -0.6
1,500,587 - -1.0
1,500,663 - +0.5
1,500,668 + -1.6
1,500,693 - -0.6
1,500,729 + +0.4
1,500,730 + +2.1
1,500,737 - -1.6
1,500,737 - -0.6
1,500,737 - +0.8
1,500,738 - -0.6
1,500,801 - -1.2
1,500,832 - +0.5
1,500,857 + +0.2
1,500,865 - -0.3
1,500,866 - -1.1
1,500,902 + +0.7
1,500,937 + MPMX20_01437 0.11 +0.7
1,501,012 - MPMX20_01437 0.15 +1.3
1,501,061 - MPMX20_01437 0.17 +0.8
1,501,095 + MPMX20_01437 0.18 -3.1
1,501,095 + MPMX20_01437 0.18 -1.8
1,501,095 - MPMX20_01437 0.18 -1.2
1,501,128 + MPMX20_01437 0.20 +2.9
1,501,166 + MPMX20_01437 0.22 -0.8
1,501,174 - MPMX20_01437 0.22 +0.5
1,501,204 - MPMX20_01437 0.23 +1.8
1,501,260 - MPMX20_01437 0.26 -0.5
1,501,276 + MPMX20_01437 0.27 -0.6
1,501,384 - MPMX20_01437 0.32 +0.8
1,501,384 - MPMX20_01437 0.32 -0.8
1,501,395 + MPMX20_01437 0.32 -0.8
1,501,482 + MPMX20_01437 0.36 -1.5
1,501,532 + MPMX20_01437 0.38 -1.1
1,501,615 + MPMX20_01437 0.42 +1.0
1,501,623 - MPMX20_01437 0.42 +0.8

Or see this region's nucleotide sequence