Experiment: 0.1X LB plate, Mixed culture; Bacillus pumilus TBS_065 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00553 and MPMX20_00554 are separated by 11 nucleotides MPMX20_00554 and MPMX20_00555 are separated by 4 nucleotides MPMX20_00555 and MPMX20_00556 are separated by 133 nucleotides
MPMX20_00553: MPMX20_00553 - Putative glycoside/cation symporter YagG, at 577,680 to 579,059
_00553
MPMX20_00554: MPMX20_00554 - Beta-xylosidase, at 579,071 to 580,690
_00554
MPMX20_00555: MPMX20_00555 - HTH-type transcriptional regulator XynR, at 580,695 to 581,453
_00555
MPMX20_00556: MPMX20_00556 - Ornithine carbamoyltransferase subunit F, at 581,587 to 582,591
_00556
Position (kb) 579
580
581 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 578.161 kb on + strand, within MPMX20_00553 at 578.161 kb on + strand, within MPMX20_00553 at 578.190 kb on - strand, within MPMX20_00553 at 578.197 kb on + strand, within MPMX20_00553 at 578.243 kb on + strand, within MPMX20_00553 at 578.248 kb on + strand, within MPMX20_00553 at 578.253 kb on + strand, within MPMX20_00553 at 578.256 kb on - strand, within MPMX20_00553 at 578.258 kb on + strand, within MPMX20_00553 at 578.258 kb on + strand, within MPMX20_00553 at 578.258 kb on + strand, within MPMX20_00553 at 578.266 kb on - strand, within MPMX20_00553 at 578.266 kb on - strand, within MPMX20_00553 at 578.288 kb on + strand, within MPMX20_00553 at 578.296 kb on + strand, within MPMX20_00553 at 578.296 kb on + strand, within MPMX20_00553 at 578.296 kb on + strand, within MPMX20_00553 at 578.296 kb on + strand, within MPMX20_00553 at 578.296 kb on + strand, within MPMX20_00553 at 578.296 kb on - strand, within MPMX20_00553 at 578.297 kb on - strand, within MPMX20_00553 at 578.304 kb on - strand, within MPMX20_00553 at 578.366 kb on + strand, within MPMX20_00553 at 578.398 kb on + strand, within MPMX20_00553 at 578.398 kb on + strand, within MPMX20_00553 at 578.398 kb on + strand, within MPMX20_00553 at 578.406 kb on - strand, within MPMX20_00553 at 578.406 kb on - strand, within MPMX20_00553 at 578.406 kb on - strand, within MPMX20_00553 at 578.406 kb on - strand, within MPMX20_00553 at 578.424 kb on + strand, within MPMX20_00553 at 578.432 kb on - strand, within MPMX20_00553 at 578.432 kb on - strand, within MPMX20_00553 at 578.434 kb on - strand, within MPMX20_00553 at 578.521 kb on - strand, within MPMX20_00553 at 578.571 kb on + strand, within MPMX20_00553 at 578.571 kb on + strand, within MPMX20_00553 at 578.675 kb on + strand, within MPMX20_00553 at 578.682 kb on - strand, within MPMX20_00553 at 578.690 kb on - strand, within MPMX20_00553 at 578.690 kb on - strand, within MPMX20_00553 at 578.690 kb on - strand, within MPMX20_00553 at 578.701 kb on + strand, within MPMX20_00553 at 578.701 kb on + strand, within MPMX20_00553 at 578.709 kb on - strand, within MPMX20_00553 at 578.726 kb on + strand, within MPMX20_00553 at 578.764 kb on + strand, within MPMX20_00553 at 578.767 kb on - strand, within MPMX20_00553 at 578.811 kb on + strand, within MPMX20_00553 at 578.819 kb on - strand, within MPMX20_00553 at 578.832 kb on + strand, within MPMX20_00553 at 578.857 kb on + strand, within MPMX20_00553 at 578.874 kb on + strand, within MPMX20_00553 at 578.940 kb on - strand at 578.996 kb on + strand at 579.007 kb on + strand at 579.012 kb on + strand at 579.013 kb on - strand at 579.015 kb on - strand at 579.017 kb on + strand at 579.017 kb on + strand at 579.025 kb on - strand at 579.025 kb on - strand at 579.108 kb on + strand at 579.110 kb on - strand at 579.172 kb on + strand at 579.179 kb on - strand at 579.180 kb on - strand at 579.180 kb on - strand at 579.233 kb on + strand, within MPMX20_00554 at 579.241 kb on - strand, within MPMX20_00554 at 579.241 kb on - strand, within MPMX20_00554 at 579.259 kb on - strand, within MPMX20_00554 at 579.307 kb on - strand, within MPMX20_00554 at 579.331 kb on + strand, within MPMX20_00554 at 579.331 kb on + strand, within MPMX20_00554 at 579.331 kb on + strand, within MPMX20_00554 at 579.339 kb on - strand, within MPMX20_00554 at 579.339 kb on - strand, within MPMX20_00554 at 579.339 kb on - strand, within MPMX20_00554 at 579.339 kb on - strand, within MPMX20_00554 at 579.412 kb on + strand, within MPMX20_00554 at 579.431 kb on - strand, within MPMX20_00554 at 579.455 kb on - strand, within MPMX20_00554 at 579.455 kb on - strand, within MPMX20_00554 at 579.504 kb on + strand, within MPMX20_00554 at 579.509 kb on + strand, within MPMX20_00554 at 579.537 kb on + strand, within MPMX20_00554 at 579.563 kb on - strand, within MPMX20_00554 at 579.576 kb on - strand, within MPMX20_00554 at 579.601 kb on + strand, within MPMX20_00554 at 579.624 kb on + strand, within MPMX20_00554 at 579.668 kb on - strand, within MPMX20_00554 at 579.711 kb on - strand, within MPMX20_00554 at 579.840 kb on - strand, within MPMX20_00554 at 579.840 kb on - strand, within MPMX20_00554 at 579.845 kb on - strand, within MPMX20_00554 at 579.855 kb on - strand, within MPMX20_00554 at 579.858 kb on - strand, within MPMX20_00554 at 579.859 kb on - strand, within MPMX20_00554 at 580.017 kb on + strand, within MPMX20_00554 at 580.017 kb on + strand, within MPMX20_00554 at 580.017 kb on + strand, within MPMX20_00554 at 580.040 kb on - strand, within MPMX20_00554 at 580.073 kb on + strand, within MPMX20_00554 at 580.089 kb on + strand, within MPMX20_00554 at 580.095 kb on + strand, within MPMX20_00554 at 580.103 kb on - strand, within MPMX20_00554 at 580.134 kb on + strand, within MPMX20_00554 at 580.186 kb on - strand, within MPMX20_00554 at 580.256 kb on - strand, within MPMX20_00554 at 580.267 kb on + strand, within MPMX20_00554 at 580.281 kb on + strand, within MPMX20_00554 at 580.281 kb on + strand, within MPMX20_00554 at 580.298 kb on + strand, within MPMX20_00554 at 580.331 kb on + strand, within MPMX20_00554 at 580.338 kb on + strand, within MPMX20_00554 at 580.338 kb on + strand, within MPMX20_00554 at 580.339 kb on - strand, within MPMX20_00554 at 580.358 kb on + strand, within MPMX20_00554 at 580.371 kb on - strand, within MPMX20_00554 at 580.371 kb on - strand, within MPMX20_00554 at 580.391 kb on + strand, within MPMX20_00554 at 580.392 kb on + strand, within MPMX20_00554 at 580.394 kb on - strand, within MPMX20_00554 at 580.405 kb on + strand, within MPMX20_00554 at 580.436 kb on + strand, within MPMX20_00554 at 580.444 kb on - strand, within MPMX20_00554 at 580.444 kb on - strand, within MPMX20_00554 at 580.454 kb on - strand, within MPMX20_00554 at 580.538 kb on - strand at 580.573 kb on - strand at 580.578 kb on - strand at 580.618 kb on - strand at 580.702 kb on + strand at 580.710 kb on - strand at 580.857 kb on + strand, within MPMX20_00555 at 580.891 kb on + strand, within MPMX20_00555 at 580.891 kb on + strand, within MPMX20_00555 at 580.899 kb on - strand, within MPMX20_00555 at 580.899 kb on - strand, within MPMX20_00555 at 580.899 kb on - strand, within MPMX20_00555 at 580.899 kb on - strand, within MPMX20_00555 at 580.899 kb on - strand, within MPMX20_00555 at 580.899 kb on - strand, within MPMX20_00555 at 580.899 kb on - strand, within MPMX20_00555 at 580.899 kb on - strand, within MPMX20_00555 at 580.913 kb on + strand, within MPMX20_00555 at 580.921 kb on - strand, within MPMX20_00555 at 580.958 kb on + strand, within MPMX20_00555 at 580.958 kb on + strand, within MPMX20_00555 at 580.958 kb on + strand, within MPMX20_00555 at 580.958 kb on + strand, within MPMX20_00555 at 580.958 kb on + strand, within MPMX20_00555 at 580.958 kb on - strand, within MPMX20_00555 at 580.959 kb on + strand, within MPMX20_00555 at 580.966 kb on - strand, within MPMX20_00555 at 580.966 kb on - strand, within MPMX20_00555 at 580.966 kb on - strand, within MPMX20_00555 at 580.966 kb on - strand, within MPMX20_00555 at 580.966 kb on - strand, within MPMX20_00555 at 580.967 kb on - strand, within MPMX20_00555 at 580.981 kb on + strand, within MPMX20_00555 at 580.981 kb on + strand, within MPMX20_00555 at 580.981 kb on + strand, within MPMX20_00555 at 580.989 kb on - strand, within MPMX20_00555 at 580.989 kb on - strand, within MPMX20_00555 at 581.061 kb on + strand, within MPMX20_00555 at 581.101 kb on + strand, within MPMX20_00555 at 581.157 kb on + strand, within MPMX20_00555 at 581.162 kb on + strand, within MPMX20_00555 at 581.162 kb on + strand, within MPMX20_00555 at 581.170 kb on - strand, within MPMX20_00555 at 581.170 kb on - strand, within MPMX20_00555 at 581.193 kb on + strand, within MPMX20_00555 at 581.201 kb on - strand, within MPMX20_00555 at 581.202 kb on - strand, within MPMX20_00555 at 581.228 kb on + strand, within MPMX20_00555 at 581.252 kb on + strand, within MPMX20_00555 at 581.302 kb on + strand, within MPMX20_00555 at 581.325 kb on - strand, within MPMX20_00555 at 581.325 kb on - strand, within MPMX20_00555 at 581.325 kb on - strand, within MPMX20_00555 at 581.360 kb on - strand, within MPMX20_00555 at 581.360 kb on - strand, within MPMX20_00555 at 581.537 kb on - strand at 581.550 kb on + strand at 581.550 kb on + strand at 581.565 kb on - strand at 581.577 kb on - strand at 581.577 kb on - strand at 581.584 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Bacillus pumilus TBS_065 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 578,161 + MPMX20_00553 0.35 -1.1 578,161 + MPMX20_00553 0.35 +0.0 578,190 - MPMX20_00553 0.37 -0.2 578,197 + MPMX20_00553 0.37 +0.1 578,243 + MPMX20_00553 0.41 +1.6 578,248 + MPMX20_00553 0.41 -0.3 578,253 + MPMX20_00553 0.42 +2.1 578,256 - MPMX20_00553 0.42 +1.7 578,258 + MPMX20_00553 0.42 +1.1 578,258 + MPMX20_00553 0.42 -0.1 578,258 + MPMX20_00553 0.42 -0.9 578,266 - MPMX20_00553 0.42 -1.5 578,266 - MPMX20_00553 0.42 +0.7 578,288 + MPMX20_00553 0.44 +0.3 578,296 + MPMX20_00553 0.45 +0.1 578,296 + MPMX20_00553 0.45 -0.6 578,296 + MPMX20_00553 0.45 +1.4 578,296 + MPMX20_00553 0.45 +0.1 578,296 + MPMX20_00553 0.45 -1.2 578,296 - MPMX20_00553 0.45 -0.7 578,297 - MPMX20_00553 0.45 +0.5 578,304 - MPMX20_00553 0.45 -0.1 578,366 + MPMX20_00553 0.50 +0.7 578,398 + MPMX20_00553 0.52 -1.7 578,398 + MPMX20_00553 0.52 +0.7 578,398 + MPMX20_00553 0.52 -0.8 578,406 - MPMX20_00553 0.53 +0.1 578,406 - MPMX20_00553 0.53 +0.1 578,406 - MPMX20_00553 0.53 -0.1 578,406 - MPMX20_00553 0.53 -1.2 578,424 + MPMX20_00553 0.54 +1.7 578,432 - MPMX20_00553 0.54 -0.8 578,432 - MPMX20_00553 0.54 -3.0 578,434 - MPMX20_00553 0.55 -0.4 578,521 - MPMX20_00553 0.61 -0.3 578,571 + MPMX20_00553 0.65 +1.1 578,571 + MPMX20_00553 0.65 +1.6 578,675 + MPMX20_00553 0.72 +0.1 578,682 - MPMX20_00553 0.73 -1.5 578,690 - MPMX20_00553 0.73 -1.0 578,690 - MPMX20_00553 0.73 -1.1 578,690 - MPMX20_00553 0.73 -0.6 578,701 + MPMX20_00553 0.74 -1.0 578,701 + MPMX20_00553 0.74 -1.4 578,709 - MPMX20_00553 0.75 +1.2 578,726 + MPMX20_00553 0.76 -0.1 578,764 + MPMX20_00553 0.79 -0.3 578,767 - MPMX20_00553 0.79 -1.2 578,811 + MPMX20_00553 0.82 -1.7 578,819 - MPMX20_00553 0.83 +0.7 578,832 + MPMX20_00553 0.83 +1.1 578,857 + MPMX20_00553 0.85 +1.7 578,874 + MPMX20_00553 0.87 -0.9 578,940 - +1.7 578,996 + -0.6 579,007 + +0.9 579,012 + +0.1 579,013 - +0.6 579,015 - +0.0 579,017 + +0.6 579,017 + -1.2 579,025 - -0.6 579,025 - -0.2 579,108 + +0.7 579,110 - -1.3 579,172 + -0.7 579,179 - -0.9 579,180 - +1.1 579,180 - -0.8 579,233 + MPMX20_00554 0.10 -0.9 579,241 - MPMX20_00554 0.10 -1.1 579,241 - MPMX20_00554 0.10 -0.7 579,259 - MPMX20_00554 0.12 -0.8 579,307 - MPMX20_00554 0.15 -0.6 579,331 + MPMX20_00554 0.16 -0.4 579,331 + MPMX20_00554 0.16 -2.0 579,331 + MPMX20_00554 0.16 -1.5 579,339 - MPMX20_00554 0.17 +0.1 579,339 - MPMX20_00554 0.17 +1.3 579,339 - MPMX20_00554 0.17 +1.7 579,339 - MPMX20_00554 0.17 +0.6 579,412 + MPMX20_00554 0.21 +0.4 579,431 - MPMX20_00554 0.22 +1.1 579,455 - MPMX20_00554 0.24 +0.1 579,455 - MPMX20_00554 0.24 -1.7 579,504 + MPMX20_00554 0.27 +1.3 579,509 + MPMX20_00554 0.27 -0.9 579,537 + MPMX20_00554 0.29 -1.2 579,563 - MPMX20_00554 0.30 +4.2 579,576 - MPMX20_00554 0.31 +0.9 579,601 + MPMX20_00554 0.33 -1.4 579,624 + MPMX20_00554 0.34 +0.0 579,668 - MPMX20_00554 0.37 -1.1 579,711 - MPMX20_00554 0.40 -0.1 579,840 - MPMX20_00554 0.47 -0.1 579,840 - MPMX20_00554 0.47 -1.3 579,845 - MPMX20_00554 0.48 +0.7 579,855 - MPMX20_00554 0.48 -0.4 579,858 - MPMX20_00554 0.49 +0.5 579,859 - MPMX20_00554 0.49 -0.0 580,017 + MPMX20_00554 0.58 -0.4 580,017 + MPMX20_00554 0.58 -0.3 580,017 + MPMX20_00554 0.58 -1.0 580,040 - MPMX20_00554 0.60 -1.4 580,073 + MPMX20_00554 0.62 +1.9 580,089 + MPMX20_00554 0.63 -1.7 580,095 + MPMX20_00554 0.63 -0.4 580,103 - MPMX20_00554 0.64 -0.5 580,134 + MPMX20_00554 0.66 +1.7 580,186 - MPMX20_00554 0.69 +1.3 580,256 - MPMX20_00554 0.73 +0.4 580,267 + MPMX20_00554 0.74 +0.4 580,281 + MPMX20_00554 0.75 -1.8 580,281 + MPMX20_00554 0.75 -1.0 580,298 + MPMX20_00554 0.76 -0.4 580,331 + MPMX20_00554 0.78 -1.3 580,338 + MPMX20_00554 0.78 -0.7 580,338 + MPMX20_00554 0.78 -0.1 580,339 - MPMX20_00554 0.78 -2.9 580,358 + MPMX20_00554 0.79 -0.8 580,371 - MPMX20_00554 0.80 +0.7 580,371 - MPMX20_00554 0.80 -0.4 580,391 + MPMX20_00554 0.81 -0.1 580,392 + MPMX20_00554 0.82 -0.8 580,394 - MPMX20_00554 0.82 -1.1 580,405 + MPMX20_00554 0.82 -0.9 580,436 + MPMX20_00554 0.84 +1.7 580,444 - MPMX20_00554 0.85 +1.0 580,444 - MPMX20_00554 0.85 +1.1 580,454 - MPMX20_00554 0.85 -1.0 580,538 - -0.6 580,573 - -1.5 580,578 - +0.7 580,618 - -1.5 580,702 + -0.4 580,710 - -1.4 580,857 + MPMX20_00555 0.21 +0.6 580,891 + MPMX20_00555 0.26 -1.1 580,891 + MPMX20_00555 0.26 -1.0 580,899 - MPMX20_00555 0.27 -0.2 580,899 - MPMX20_00555 0.27 +1.0 580,899 - MPMX20_00555 0.27 -1.0 580,899 - MPMX20_00555 0.27 -1.0 580,899 - MPMX20_00555 0.27 -1.7 580,899 - MPMX20_00555 0.27 -0.1 580,899 - MPMX20_00555 0.27 +2.1 580,899 - MPMX20_00555 0.27 -0.9 580,913 + MPMX20_00555 0.29 +0.9 580,921 - MPMX20_00555 0.30 -0.6 580,958 + MPMX20_00555 0.35 -1.5 580,958 + MPMX20_00555 0.35 +0.1 580,958 + MPMX20_00555 0.35 -0.8 580,958 + MPMX20_00555 0.35 +0.7 580,958 + MPMX20_00555 0.35 -0.0 580,958 - MPMX20_00555 0.35 +0.6 580,959 + MPMX20_00555 0.35 +1.7 580,966 - MPMX20_00555 0.36 +0.7 580,966 - MPMX20_00555 0.36 +1.1 580,966 - MPMX20_00555 0.36 +1.0 580,966 - MPMX20_00555 0.36 +0.4 580,966 - MPMX20_00555 0.36 +0.2 580,967 - MPMX20_00555 0.36 -1.1 580,981 + MPMX20_00555 0.38 +1.7 580,981 + MPMX20_00555 0.38 +0.1 580,981 + MPMX20_00555 0.38 -0.4 580,989 - MPMX20_00555 0.39 -0.7 580,989 - MPMX20_00555 0.39 +1.1 581,061 + MPMX20_00555 0.48 -1.1 581,101 + MPMX20_00555 0.53 -0.7 581,157 + MPMX20_00555 0.61 +1.1 581,162 + MPMX20_00555 0.62 -1.4 581,162 + MPMX20_00555 0.62 +0.2 581,170 - MPMX20_00555 0.63 +1.1 581,170 - MPMX20_00555 0.63 +0.0 581,193 + MPMX20_00555 0.66 -0.1 581,201 - MPMX20_00555 0.67 -0.1 581,202 - MPMX20_00555 0.67 +0.1 581,228 + MPMX20_00555 0.70 -0.6 581,252 + MPMX20_00555 0.73 -1.0 581,302 + MPMX20_00555 0.80 -0.5 581,325 - MPMX20_00555 0.83 -1.5 581,325 - MPMX20_00555 0.83 +2.1 581,325 - MPMX20_00555 0.83 -0.0 581,360 - MPMX20_00555 0.88 +0.3 581,360 - MPMX20_00555 0.88 -0.1 581,537 - -0.6 581,550 + -0.6 581,550 + -0.9 581,565 - +0.6 581,577 - +0.7 581,577 - +0.7 581,584 + +1.5
Or see this region's nucleotide sequence