Experiment: 0.1X LB plate, Mixed culture; Bacillus pumilus TBS_065 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00146 and MPMX20_00147 are separated by 224 nucleotides MPMX20_00147 and MPMX20_00148 are separated by 0 nucleotides MPMX20_00148 and MPMX20_00149 overlap by 7 nucleotides
MPMX20_00146: MPMX20_00146 - Inner membrane symporter YicJ, at 149,576 to 150,976
_00146
MPMX20_00147: MPMX20_00147 - HTH-type transcriptional activator RhaR, at 151,201 to 152,019
_00147
MPMX20_00148: MPMX20_00148 - L-ribulose-5-phosphate 4-epimerase SgbE, at 152,020 to 152,715
_00148
MPMX20_00149: MPMX20_00149 - L-ribulose-5-phosphate 3-epimerase UlaE, at 152,709 to 153,569
_00149
Position (kb)
151
152
153 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6
7
8 at 150.204 kb on + strand, within MPMX20_00146 at 150.333 kb on - strand, within MPMX20_00146 at 150.368 kb on + strand, within MPMX20_00146 at 150.373 kb on + strand, within MPMX20_00146 at 150.381 kb on - strand, within MPMX20_00146 at 150.381 kb on - strand, within MPMX20_00146 at 150.381 kb on - strand, within MPMX20_00146 at 150.381 kb on - strand, within MPMX20_00146 at 150.381 kb on - strand, within MPMX20_00146 at 150.408 kb on + strand, within MPMX20_00146 at 150.410 kb on - strand, within MPMX20_00146 at 150.431 kb on - strand, within MPMX20_00146 at 150.439 kb on + strand, within MPMX20_00146 at 150.465 kb on + strand, within MPMX20_00146 at 150.470 kb on + strand, within MPMX20_00146 at 150.475 kb on + strand, within MPMX20_00146 at 150.476 kb on - strand, within MPMX20_00146 at 150.478 kb on - strand, within MPMX20_00146 at 150.483 kb on - strand, within MPMX20_00146 at 150.506 kb on - strand, within MPMX20_00146 at 150.536 kb on - strand, within MPMX20_00146 at 150.538 kb on + strand, within MPMX20_00146 at 150.586 kb on + strand, within MPMX20_00146 at 150.637 kb on + strand, within MPMX20_00146 at 150.637 kb on + strand, within MPMX20_00146 at 150.644 kb on + strand, within MPMX20_00146 at 150.644 kb on + strand, within MPMX20_00146 at 150.644 kb on + strand, within MPMX20_00146 at 150.644 kb on + strand, within MPMX20_00146 at 150.652 kb on - strand, within MPMX20_00146 at 150.652 kb on - strand, within MPMX20_00146 at 150.652 kb on - strand, within MPMX20_00146 at 150.678 kb on + strand, within MPMX20_00146 at 150.773 kb on - strand, within MPMX20_00146 at 150.775 kb on + strand, within MPMX20_00146 at 150.777 kb on + strand, within MPMX20_00146 at 150.777 kb on + strand, within MPMX20_00146 at 150.783 kb on - strand, within MPMX20_00146 at 150.785 kb on - strand, within MPMX20_00146 at 150.785 kb on - strand, within MPMX20_00146 at 150.833 kb on - strand, within MPMX20_00146 at 150.833 kb on - strand, within MPMX20_00146 at 150.860 kb on + strand at 150.860 kb on + strand at 150.860 kb on + strand at 150.860 kb on + strand at 150.860 kb on + strand at 150.860 kb on + strand at 150.860 kb on + strand at 150.860 kb on + strand at 150.860 kb on + strand at 150.860 kb on + strand at 150.860 kb on + strand at 150.860 kb on + strand at 150.860 kb on + strand at 150.860 kb on + strand at 150.860 kb on + strand at 150.865 kb on + strand at 150.868 kb on - strand at 150.868 kb on - strand at 150.868 kb on - strand at 150.868 kb on - strand at 150.868 kb on - strand at 150.868 kb on - strand at 150.868 kb on - strand at 150.884 kb on + strand at 150.884 kb on + strand at 150.915 kb on + strand at 150.923 kb on + strand at 150.928 kb on + strand at 150.938 kb on + strand at 150.947 kb on + strand at 150.947 kb on + strand at 150.964 kb on + strand at 150.964 kb on + strand at 150.964 kb on + strand at 150.964 kb on + strand at 150.964 kb on + strand at 150.964 kb on + strand at 150.964 kb on + strand at 150.964 kb on + strand at 150.964 kb on + strand at 150.964 kb on + strand at 150.964 kb on + strand at 150.972 kb on + strand at 150.972 kb on + strand at 150.972 kb on + strand at 150.972 kb on + strand at 150.972 kb on + strand at 150.972 kb on + strand at 150.972 kb on + strand at 150.972 kb on - strand at 150.972 kb on - strand at 150.972 kb on - strand at 150.979 kb on + strand at 150.980 kb on - strand at 150.980 kb on - strand at 150.983 kb on + strand at 150.984 kb on + strand at 150.984 kb on + strand at 151.026 kb on + strand at 151.031 kb on + strand at 151.031 kb on + strand at 151.039 kb on + strand at 151.044 kb on - strand at 151.045 kb on + strand at 151.045 kb on + strand at 151.058 kb on - strand at 151.087 kb on + strand at 151.087 kb on + strand at 151.087 kb on + strand at 151.087 kb on + strand at 151.087 kb on + strand at 151.095 kb on - strand at 151.095 kb on - strand at 151.095 kb on - strand at 151.095 kb on - strand at 151.210 kb on - strand at 151.249 kb on - strand at 151.271 kb on + strand at 151.297 kb on - strand, within MPMX20_00147 at 151.297 kb on - strand, within MPMX20_00147 at 151.297 kb on - strand, within MPMX20_00147 at 151.297 kb on - strand, within MPMX20_00147 at 151.297 kb on - strand, within MPMX20_00147 at 151.303 kb on - strand, within MPMX20_00147 at 151.306 kb on - strand, within MPMX20_00147 at 151.364 kb on - strand, within MPMX20_00147 at 151.367 kb on + strand, within MPMX20_00147 at 151.369 kb on + strand, within MPMX20_00147 at 151.380 kb on - strand, within MPMX20_00147 at 151.380 kb on - strand, within MPMX20_00147 at 151.380 kb on - strand, within MPMX20_00147 at 151.380 kb on - strand, within MPMX20_00147 at 151.386 kb on + strand, within MPMX20_00147 at 151.387 kb on - strand, within MPMX20_00147 at 151.387 kb on - strand, within MPMX20_00147 at 151.394 kb on - strand, within MPMX20_00147 at 151.394 kb on - strand, within MPMX20_00147 at 151.394 kb on - strand, within MPMX20_00147 at 151.394 kb on - strand, within MPMX20_00147 at 151.394 kb on - strand, within MPMX20_00147 at 151.394 kb on - strand, within MPMX20_00147 at 151.394 kb on - strand, within MPMX20_00147 at 151.394 kb on - strand, within MPMX20_00147 at 151.394 kb on - strand, within MPMX20_00147 at 151.403 kb on + strand, within MPMX20_00147 at 151.417 kb on + strand, within MPMX20_00147 at 151.448 kb on - strand, within MPMX20_00147 at 151.448 kb on - strand, within MPMX20_00147 at 151.473 kb on + strand, within MPMX20_00147 at 151.473 kb on + strand, within MPMX20_00147 at 151.513 kb on - strand, within MPMX20_00147 at 151.515 kb on + strand, within MPMX20_00147 at 151.515 kb on + strand, within MPMX20_00147 at 151.515 kb on + strand, within MPMX20_00147 at 151.515 kb on + strand, within MPMX20_00147 at 151.523 kb on - strand, within MPMX20_00147 at 151.549 kb on + strand, within MPMX20_00147 at 151.603 kb on - strand, within MPMX20_00147 at 151.644 kb on + strand, within MPMX20_00147 at 151.644 kb on - strand, within MPMX20_00147 at 151.652 kb on - strand, within MPMX20_00147 at 151.654 kb on + strand, within MPMX20_00147 at 151.654 kb on - strand, within MPMX20_00147 at 151.659 kb on + strand, within MPMX20_00147 at 151.662 kb on - strand, within MPMX20_00147 at 151.728 kb on - strand, within MPMX20_00147 at 151.759 kb on + strand, within MPMX20_00147 at 151.759 kb on + strand, within MPMX20_00147 at 151.759 kb on + strand, within MPMX20_00147 at 151.760 kb on - strand, within MPMX20_00147 at 151.760 kb on - strand, within MPMX20_00147 at 151.767 kb on - strand, within MPMX20_00147 at 151.767 kb on - strand, within MPMX20_00147 at 151.767 kb on - strand, within MPMX20_00147 at 151.775 kb on - strand, within MPMX20_00147 at 151.811 kb on + strand, within MPMX20_00147 at 151.824 kb on - strand, within MPMX20_00147 at 151.824 kb on - strand, within MPMX20_00147 at 151.913 kb on + strand, within MPMX20_00147 at 151.969 kb on - strand at 151.984 kb on + strand at 151.991 kb on + strand at 151.991 kb on + strand at 151.991 kb on + strand at 151.991 kb on + strand at 151.991 kb on + strand at 151.992 kb on + strand at 151.992 kb on - strand at 151.994 kb on + strand at 151.994 kb on + strand at 151.999 kb on - strand at 151.999 kb on - strand at 151.999 kb on - strand at 151.999 kb on - strand at 151.999 kb on - strand at 152.012 kb on - strand at 152.032 kb on + strand at 152.066 kb on - strand at 152.098 kb on - strand, within MPMX20_00148 at 152.156 kb on + strand, within MPMX20_00148 at 152.156 kb on - strand, within MPMX20_00148 at 152.164 kb on - strand, within MPMX20_00148 at 152.164 kb on - strand, within MPMX20_00148 at 152.166 kb on - strand, within MPMX20_00148 at 152.199 kb on - strand, within MPMX20_00148 at 152.222 kb on + strand, within MPMX20_00148 at 152.238 kb on + strand, within MPMX20_00148 at 152.238 kb on + strand, within MPMX20_00148 at 152.245 kb on - strand, within MPMX20_00148 at 152.246 kb on - strand, within MPMX20_00148 at 152.246 kb on - strand, within MPMX20_00148 at 152.246 kb on - strand, within MPMX20_00148 at 152.253 kb on + strand, within MPMX20_00148 at 152.282 kb on - strand, within MPMX20_00148 at 152.318 kb on + strand, within MPMX20_00148 at 152.318 kb on + strand, within MPMX20_00148 at 152.374 kb on - strand, within MPMX20_00148 at 152.394 kb on - strand, within MPMX20_00148 at 152.394 kb on - strand, within MPMX20_00148 at 152.428 kb on + strand, within MPMX20_00148 at 152.428 kb on + strand, within MPMX20_00148 at 152.459 kb on + strand, within MPMX20_00148 at 152.477 kb on - strand, within MPMX20_00148 at 152.477 kb on - strand, within MPMX20_00148 at 152.486 kb on - strand, within MPMX20_00148 at 152.486 kb on - strand, within MPMX20_00148 at 152.546 kb on + strand, within MPMX20_00148 at 152.554 kb on - strand, within MPMX20_00148 at 152.554 kb on - strand, within MPMX20_00148 at 152.554 kb on - strand, within MPMX20_00148 at 152.554 kb on - strand, within MPMX20_00148 at 152.563 kb on + strand, within MPMX20_00148 at 152.588 kb on + strand, within MPMX20_00148 at 152.596 kb on - strand, within MPMX20_00148 at 152.598 kb on + strand, within MPMX20_00148 at 152.624 kb on + strand, within MPMX20_00148 at 152.629 kb on + strand, within MPMX20_00148 at 152.632 kb on - strand, within MPMX20_00148 at 152.632 kb on - strand, within MPMX20_00148 at 152.632 kb on - strand, within MPMX20_00148 at 152.638 kb on - strand, within MPMX20_00148 at 152.696 kb on + strand at 152.704 kb on - strand at 152.706 kb on + strand at 152.713 kb on + strand at 152.714 kb on - strand at 152.718 kb on + strand at 152.845 kb on - strand, within MPMX20_00149 at 152.874 kb on + strand, within MPMX20_00149 at 152.882 kb on - strand, within MPMX20_00149 at 152.893 kb on + strand, within MPMX20_00149 at 152.911 kb on - strand, within MPMX20_00149 at 152.920 kb on + strand, within MPMX20_00149 at 152.935 kb on + strand, within MPMX20_00149 at 152.965 kb on + strand, within MPMX20_00149 at 152.973 kb on - strand, within MPMX20_00149 at 153.000 kb on - strand, within MPMX20_00149 at 153.011 kb on + strand, within MPMX20_00149
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Bacillus pumilus TBS_065 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 150,204 + MPMX20_00146 0.45 +1.7 150,333 - MPMX20_00146 0.54 +1.1 150,368 + MPMX20_00146 0.57 -1.1 150,373 + MPMX20_00146 0.57 -1.2 150,381 - MPMX20_00146 0.57 +1.7 150,381 - MPMX20_00146 0.57 -0.6 150,381 - MPMX20_00146 0.57 -0.6 150,381 - MPMX20_00146 0.57 -1.6 150,381 - MPMX20_00146 0.57 -1.4 150,408 + MPMX20_00146 0.59 +1.1 150,410 - MPMX20_00146 0.60 +0.1 150,431 - MPMX20_00146 0.61 +0.4 150,439 + MPMX20_00146 0.62 +1.0 150,465 + MPMX20_00146 0.63 +0.1 150,470 + MPMX20_00146 0.64 +0.7 150,475 + MPMX20_00146 0.64 +0.1 150,476 - MPMX20_00146 0.64 +0.7 150,478 - MPMX20_00146 0.64 +1.1 150,483 - MPMX20_00146 0.65 +0.2 150,506 - MPMX20_00146 0.66 -2.6 150,536 - MPMX20_00146 0.69 -2.0 150,538 + MPMX20_00146 0.69 +1.7 150,586 + MPMX20_00146 0.72 +0.1 150,637 + MPMX20_00146 0.76 -0.7 150,637 + MPMX20_00146 0.76 +0.1 150,644 + MPMX20_00146 0.76 -1.5 150,644 + MPMX20_00146 0.76 -0.4 150,644 + MPMX20_00146 0.76 +0.9 150,644 + MPMX20_00146 0.76 -1.4 150,652 - MPMX20_00146 0.77 +0.1 150,652 - MPMX20_00146 0.77 +1.7 150,652 - MPMX20_00146 0.77 -2.2 150,678 + MPMX20_00146 0.79 +0.1 150,773 - MPMX20_00146 0.85 -1.1 150,775 + MPMX20_00146 0.86 +1.0 150,777 + MPMX20_00146 0.86 -0.7 150,777 + MPMX20_00146 0.86 -1.3 150,783 - MPMX20_00146 0.86 -1.0 150,785 - MPMX20_00146 0.86 -1.3 150,785 - MPMX20_00146 0.86 -0.9 150,833 - MPMX20_00146 0.90 +1.4 150,833 - MPMX20_00146 0.90 +1.1 150,860 + +0.7 150,860 + +1.7 150,860 + +1.7 150,860 + -0.9 150,860 + +1.7 150,860 + -0.7 150,860 + +0.4 150,860 + +1.1 150,860 + -0.1 150,860 + +0.4 150,860 + -0.7 150,860 + -0.0 150,860 + +1.1 150,860 + +1.7 150,860 + -0.8 150,865 + -0.7 150,868 - +5.3 150,868 - +1.4 150,868 - -1.3 150,868 - +1.1 150,868 - -0.4 150,868 - +2.7 150,868 - -1.2 150,884 + -1.8 150,884 + +1.1 150,915 + -1.8 150,923 + +1.1 150,928 + -1.1 150,938 + +1.1 150,947 + -0.6 150,947 + -0.1 150,964 + +0.9 150,964 + +1.1 150,964 + -0.7 150,964 + -1.3 150,964 + -0.4 150,964 + -1.0 150,964 + +0.4 150,964 + +0.7 150,964 + -0.0 150,964 + -0.1 150,964 + -0.1 150,972 + -0.7 150,972 + +0.7 150,972 + +0.7 150,972 + +1.1 150,972 + +1.7 150,972 + +1.1 150,972 + -0.1 150,972 - +0.4 150,972 - -0.6 150,972 - +1.7 150,979 + +1.7 150,980 - +0.2 150,980 - -0.2 150,983 + +0.1 150,984 + -0.4 150,984 + -0.4 151,026 + +2.7 151,031 + +0.3 151,031 + -1.4 151,039 + +0.4 151,044 - -1.1 151,045 + -0.3 151,045 + +0.7 151,058 - -0.3 151,087 + -0.3 151,087 + -0.7 151,087 + +1.1 151,087 + -0.8 151,087 + +1.3 151,095 - +0.3 151,095 - +0.1 151,095 - -1.2 151,095 - -1.7 151,210 - +0.1 151,249 - +0.9 151,271 + +1.1 151,297 - MPMX20_00147 0.12 +0.1 151,297 - MPMX20_00147 0.12 -1.2 151,297 - MPMX20_00147 0.12 -0.1 151,297 - MPMX20_00147 0.12 -0.5 151,297 - MPMX20_00147 0.12 +2.7 151,303 - MPMX20_00147 0.12 -0.1 151,306 - MPMX20_00147 0.13 -0.2 151,364 - MPMX20_00147 0.20 -2.4 151,367 + MPMX20_00147 0.20 -0.9 151,369 + MPMX20_00147 0.21 +0.5 151,380 - MPMX20_00147 0.22 -1.3 151,380 - MPMX20_00147 0.22 -1.6 151,380 - MPMX20_00147 0.22 +2.1 151,380 - MPMX20_00147 0.22 -1.1 151,386 + MPMX20_00147 0.23 -0.1 151,387 - MPMX20_00147 0.23 +1.7 151,387 - MPMX20_00147 0.23 +0.1 151,394 - MPMX20_00147 0.24 +0.7 151,394 - MPMX20_00147 0.24 -0.1 151,394 - MPMX20_00147 0.24 +0.3 151,394 - MPMX20_00147 0.24 +0.7 151,394 - MPMX20_00147 0.24 +8.7 151,394 - MPMX20_00147 0.24 +0.7 151,394 - MPMX20_00147 0.24 +1.1 151,394 - MPMX20_00147 0.24 +0.4 151,394 - MPMX20_00147 0.24 +0.4 151,403 + MPMX20_00147 0.25 -1.2 151,417 + MPMX20_00147 0.26 +1.7 151,448 - MPMX20_00147 0.30 +2.1 151,448 - MPMX20_00147 0.30 +0.4 151,473 + MPMX20_00147 0.33 +1.3 151,473 + MPMX20_00147 0.33 +0.7 151,513 - MPMX20_00147 0.38 -0.1 151,515 + MPMX20_00147 0.38 -0.7 151,515 + MPMX20_00147 0.38 +1.3 151,515 + MPMX20_00147 0.38 -2.0 151,515 + MPMX20_00147 0.38 +0.3 151,523 - MPMX20_00147 0.39 +0.4 151,549 + MPMX20_00147 0.42 -0.3 151,603 - MPMX20_00147 0.49 +0.1 151,644 + MPMX20_00147 0.54 +0.1 151,644 - MPMX20_00147 0.54 -1.9 151,652 - MPMX20_00147 0.55 +0.3 151,654 + MPMX20_00147 0.55 -0.3 151,654 - MPMX20_00147 0.55 -0.6 151,659 + MPMX20_00147 0.56 +0.7 151,662 - MPMX20_00147 0.56 +1.1 151,728 - MPMX20_00147 0.64 -0.0 151,759 + MPMX20_00147 0.68 -2.2 151,759 + MPMX20_00147 0.68 -1.0 151,759 + MPMX20_00147 0.68 -1.9 151,760 - MPMX20_00147 0.68 -0.1 151,760 - MPMX20_00147 0.68 -1.0 151,767 - MPMX20_00147 0.69 -2.9 151,767 - MPMX20_00147 0.69 -0.6 151,767 - MPMX20_00147 0.69 -0.1 151,775 - MPMX20_00147 0.70 -0.7 151,811 + MPMX20_00147 0.74 +0.4 151,824 - MPMX20_00147 0.76 +0.1 151,824 - MPMX20_00147 0.76 +1.1 151,913 + MPMX20_00147 0.87 -0.1 151,969 - -1.1 151,984 + +0.3 151,991 + +0.4 151,991 + +2.7 151,991 + -1.8 151,991 + -0.3 151,991 + -1.4 151,992 + -1.0 151,992 - -1.3 151,994 + +0.7 151,994 + -2.0 151,999 - -0.2 151,999 - -1.6 151,999 - -1.4 151,999 - -0.5 151,999 - -0.6 152,012 - -1.3 152,032 + +1.1 152,066 - -0.0 152,098 - MPMX20_00148 0.11 -0.1 152,156 + MPMX20_00148 0.20 -0.5 152,156 - MPMX20_00148 0.20 +0.5 152,164 - MPMX20_00148 0.21 -0.4 152,164 - MPMX20_00148 0.21 +0.1 152,166 - MPMX20_00148 0.21 -0.2 152,199 - MPMX20_00148 0.26 -0.2 152,222 + MPMX20_00148 0.29 +1.1 152,238 + MPMX20_00148 0.31 -0.5 152,238 + MPMX20_00148 0.31 -0.7 152,245 - MPMX20_00148 0.32 -0.7 152,246 - MPMX20_00148 0.32 -2.1 152,246 - MPMX20_00148 0.32 +0.3 152,246 - MPMX20_00148 0.32 +7.4 152,253 + MPMX20_00148 0.33 -1.7 152,282 - MPMX20_00148 0.38 +2.1 152,318 + MPMX20_00148 0.43 -0.4 152,318 + MPMX20_00148 0.43 -1.4 152,374 - MPMX20_00148 0.51 -0.9 152,394 - MPMX20_00148 0.54 +1.1 152,394 - MPMX20_00148 0.54 -0.6 152,428 + MPMX20_00148 0.59 +0.1 152,428 + MPMX20_00148 0.59 +0.7 152,459 + MPMX20_00148 0.63 -0.2 152,477 - MPMX20_00148 0.66 +0.3 152,477 - MPMX20_00148 0.66 +2.7 152,486 - MPMX20_00148 0.67 -0.5 152,486 - MPMX20_00148 0.67 +0.5 152,546 + MPMX20_00148 0.76 -1.4 152,554 - MPMX20_00148 0.77 -0.9 152,554 - MPMX20_00148 0.77 +1.1 152,554 - MPMX20_00148 0.77 +0.7 152,554 - MPMX20_00148 0.77 -0.4 152,563 + MPMX20_00148 0.78 +0.1 152,588 + MPMX20_00148 0.82 +2.7 152,596 - MPMX20_00148 0.83 +4.9 152,598 + MPMX20_00148 0.83 -0.8 152,624 + MPMX20_00148 0.87 -0.9 152,629 + MPMX20_00148 0.88 +1.1 152,632 - MPMX20_00148 0.88 +0.0 152,632 - MPMX20_00148 0.88 -0.7 152,632 - MPMX20_00148 0.88 +1.7 152,638 - MPMX20_00148 0.89 +0.3 152,696 + -0.5 152,704 - -0.6 152,706 + -0.3 152,713 + +1.4 152,714 - -1.0 152,718 + -1.3 152,845 - MPMX20_00149 0.16 +2.1 152,874 + MPMX20_00149 0.19 +0.7 152,882 - MPMX20_00149 0.20 -0.3 152,893 + MPMX20_00149 0.21 +0.7 152,911 - MPMX20_00149 0.23 +0.4 152,920 + MPMX20_00149 0.25 -1.3 152,935 + MPMX20_00149 0.26 -0.6 152,965 + MPMX20_00149 0.30 +0.2 152,973 - MPMX20_00149 0.31 +0.6 153,000 - MPMX20_00149 0.34 -2.0 153,011 + MPMX20_00149 0.35 +0.6
Or see this region's nucleotide sequence