Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00011

Experiment: 0.1X LB plate, Mixed culture; Bacillus pumilus TBS_065 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00009 and MPMX20_00010 overlap by 17 nucleotidesMPMX20_00010 and MPMX20_00011 overlap by 4 nucleotidesMPMX20_00011 and MPMX20_00012 are separated by 117 nucleotides MPMX20_00009: MPMX20_00009 - putative 2-dehydro-3-deoxygalactonokinase DgoK1, at 10,119 to 10,997 _00009 MPMX20_00010: MPMX20_00010 - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase, at 10,981 to 11,598 _00010 MPMX20_00011: MPMX20_00011 - D-galactonate dehydratase, at 11,595 to 12,743 _00011 MPMX20_00012: MPMX20_00012 - D-galactonate transporter, at 12,861 to 14,153 _00012 Position (kb) 11 12 13Strain fitness (log2 ratio) -2 -1 0 1 2at 10.676 kb on - strand, within MPMX20_00009at 10.692 kb on + strand, within MPMX20_00009at 10.695 kb on - strand, within MPMX20_00009at 10.697 kb on + strand, within MPMX20_00009at 10.705 kb on - strand, within MPMX20_00009at 10.776 kb on - strand, within MPMX20_00009at 10.827 kb on - strand, within MPMX20_00009at 10.853 kb on - strand, within MPMX20_00009at 10.862 kb on - strand, within MPMX20_00009at 11.009 kb on + strandat 11.009 kb on + strandat 11.009 kb on + strandat 11.009 kb on + strandat 11.017 kb on - strandat 11.209 kb on + strand, within MPMX20_00010at 11.274 kb on + strand, within MPMX20_00010at 11.386 kb on + strand, within MPMX20_00010at 11.394 kb on - strand, within MPMX20_00010at 11.433 kb on - strand, within MPMX20_00010at 11.433 kb on - strand, within MPMX20_00010at 11.475 kb on + strand, within MPMX20_00010at 11.500 kb on + strand, within MPMX20_00010at 11.500 kb on + strand, within MPMX20_00010at 11.500 kb on + strand, within MPMX20_00010at 11.500 kb on + strand, within MPMX20_00010at 11.500 kb on + strand, within MPMX20_00010at 11.508 kb on - strand, within MPMX20_00010at 11.508 kb on - strand, within MPMX20_00010at 11.546 kb on + strandat 11.586 kb on - strandat 11.621 kb on + strandat 11.675 kb on - strandat 11.675 kb on - strandat 11.688 kb on - strandat 11.736 kb on - strand, within MPMX20_00011at 11.754 kb on + strand, within MPMX20_00011at 11.798 kb on - strand, within MPMX20_00011at 11.813 kb on - strand, within MPMX20_00011at 11.826 kb on + strand, within MPMX20_00011at 11.826 kb on + strand, within MPMX20_00011at 11.826 kb on + strand, within MPMX20_00011at 11.826 kb on + strand, within MPMX20_00011at 11.826 kb on + strand, within MPMX20_00011at 11.826 kb on + strand, within MPMX20_00011at 11.826 kb on + strand, within MPMX20_00011at 11.834 kb on - strand, within MPMX20_00011at 11.834 kb on - strand, within MPMX20_00011at 11.834 kb on - strand, within MPMX20_00011at 11.834 kb on - strand, within MPMX20_00011at 11.834 kb on - strand, within MPMX20_00011at 11.834 kb on - strand, within MPMX20_00011at 11.834 kb on - strand, within MPMX20_00011at 11.861 kb on - strand, within MPMX20_00011at 11.940 kb on + strand, within MPMX20_00011at 11.948 kb on - strand, within MPMX20_00011at 11.948 kb on - strand, within MPMX20_00011at 11.954 kb on + strand, within MPMX20_00011at 11.955 kb on - strand, within MPMX20_00011at 11.963 kb on - strand, within MPMX20_00011at 11.994 kb on - strand, within MPMX20_00011at 11.994 kb on - strand, within MPMX20_00011at 12.019 kb on + strand, within MPMX20_00011at 12.019 kb on + strand, within MPMX20_00011at 12.027 kb on - strand, within MPMX20_00011at 12.027 kb on - strand, within MPMX20_00011at 12.027 kb on - strand, within MPMX20_00011at 12.034 kb on + strand, within MPMX20_00011at 12.034 kb on + strand, within MPMX20_00011at 12.034 kb on + strand, within MPMX20_00011at 12.034 kb on + strand, within MPMX20_00011at 12.042 kb on + strand, within MPMX20_00011at 12.044 kb on + strand, within MPMX20_00011at 12.052 kb on - strand, within MPMX20_00011at 12.104 kb on - strand, within MPMX20_00011at 12.111 kb on - strand, within MPMX20_00011at 12.136 kb on + strand, within MPMX20_00011at 12.220 kb on - strand, within MPMX20_00011at 12.274 kb on + strand, within MPMX20_00011at 12.320 kb on + strand, within MPMX20_00011at 12.320 kb on + strand, within MPMX20_00011at 12.366 kb on + strand, within MPMX20_00011at 12.498 kb on + strand, within MPMX20_00011at 12.525 kb on - strand, within MPMX20_00011at 12.530 kb on - strand, within MPMX20_00011at 12.535 kb on - strand, within MPMX20_00011at 12.535 kb on - strand, within MPMX20_00011at 12.553 kb on + strand, within MPMX20_00011at 12.558 kb on + strand, within MPMX20_00011at 12.664 kb on - strandat 12.694 kb on + strandat 12.694 kb on + strandat 12.694 kb on + strandat 12.695 kb on + strandat 12.702 kb on - strandat 12.702 kb on - strandat 12.727 kb on - strandat 12.729 kb on + strandat 12.737 kb on + strandat 12.790 kb on + strandat 12.812 kb on - strandat 12.889 kb on - strandat 12.904 kb on + strandat 12.904 kb on + strandat 12.904 kb on + strandat 12.904 kb on + strandat 12.904 kb on + strandat 12.904 kb on + strandat 12.912 kb on - strandat 12.912 kb on - strandat 12.912 kb on - strandat 12.912 kb on - strandat 12.912 kb on - strandat 12.912 kb on - strandat 12.912 kb on - strandat 12.912 kb on - strandat 12.941 kb on + strandat 12.946 kb on - strandat 12.956 kb on + strandat 12.963 kb on - strandat 12.969 kb on - strandat 12.969 kb on - strandat 13.046 kb on + strand, within MPMX20_00012at 13.054 kb on - strand, within MPMX20_00012at 13.148 kb on + strand, within MPMX20_00012at 13.223 kb on - strand, within MPMX20_00012at 13.289 kb on - strand, within MPMX20_00012at 13.295 kb on - strand, within MPMX20_00012at 13.297 kb on - strand, within MPMX20_00012at 13.305 kb on - strand, within MPMX20_00012at 13.305 kb on - strand, within MPMX20_00012at 13.348 kb on - strand, within MPMX20_00012at 13.356 kb on + strand, within MPMX20_00012at 13.364 kb on - strand, within MPMX20_00012at 13.364 kb on - strand, within MPMX20_00012at 13.428 kb on - strand, within MPMX20_00012at 13.428 kb on - strand, within MPMX20_00012at 13.502 kb on + strand, within MPMX20_00012at 13.547 kb on + strand, within MPMX20_00012at 13.547 kb on + strand, within MPMX20_00012at 13.547 kb on + strand, within MPMX20_00012at 13.555 kb on - strand, within MPMX20_00012at 13.599 kb on - strand, within MPMX20_00012at 13.607 kb on + strand, within MPMX20_00012at 13.618 kb on + strand, within MPMX20_00012at 13.618 kb on + strand, within MPMX20_00012at 13.618 kb on + strand, within MPMX20_00012at 13.624 kb on - strand, within MPMX20_00012at 13.626 kb on - strand, within MPMX20_00012at 13.626 kb on - strand, within MPMX20_00012at 13.675 kb on - strand, within MPMX20_00012at 13.729 kb on + strand, within MPMX20_00012at 13.735 kb on - strand, within MPMX20_00012

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Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Bacillus pumilus TBS_065 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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10,676 - MPMX20_00009 0.63 -0.4
10,692 + MPMX20_00009 0.65 -1.9
10,695 - MPMX20_00009 0.66 -0.4
10,697 + MPMX20_00009 0.66 -0.4
10,705 - MPMX20_00009 0.67 +0.3
10,776 - MPMX20_00009 0.75 +1.7
10,827 - MPMX20_00009 0.81 +0.6
10,853 - MPMX20_00009 0.84 +1.7
10,862 - MPMX20_00009 0.85 +0.7
11,009 + -0.9
11,009 + -1.5
11,009 + -0.1
11,009 + -1.2
11,017 - +0.7
11,209 + MPMX20_00010 0.37 -2.1
11,274 + MPMX20_00010 0.47 -1.9
11,386 + MPMX20_00010 0.66 -0.8
11,394 - MPMX20_00010 0.67 -1.7
11,433 - MPMX20_00010 0.73 -0.7
11,433 - MPMX20_00010 0.73 -1.5
11,475 + MPMX20_00010 0.80 +1.2
11,500 + MPMX20_00010 0.84 -2.1
11,500 + MPMX20_00010 0.84 -1.1
11,500 + MPMX20_00010 0.84 -1.2
11,500 + MPMX20_00010 0.84 -0.7
11,500 + MPMX20_00010 0.84 -0.7
11,508 - MPMX20_00010 0.85 -0.4
11,508 - MPMX20_00010 0.85 +1.7
11,546 + -0.6
11,586 - -1.2
11,621 + -0.7
11,675 - +0.2
11,675 - -0.5
11,688 - -1.0
11,736 - MPMX20_00011 0.12 +1.2
11,754 + MPMX20_00011 0.14 -1.0
11,798 - MPMX20_00011 0.18 -0.6
11,813 - MPMX20_00011 0.19 -0.8
11,826 + MPMX20_00011 0.20 -0.6
11,826 + MPMX20_00011 0.20 +2.2
11,826 + MPMX20_00011 0.20 -0.4
11,826 + MPMX20_00011 0.20 +1.0
11,826 + MPMX20_00011 0.20 -0.2
11,826 + MPMX20_00011 0.20 +1.2
11,826 + MPMX20_00011 0.20 -1.8
11,834 - MPMX20_00011 0.21 +0.7
11,834 - MPMX20_00011 0.21 +1.2
11,834 - MPMX20_00011 0.21 -0.3
11,834 - MPMX20_00011 0.21 -1.6
11,834 - MPMX20_00011 0.21 -0.7
11,834 - MPMX20_00011 0.21 +1.2
11,834 - MPMX20_00011 0.21 -1.3
11,861 - MPMX20_00011 0.23 -0.2
11,940 + MPMX20_00011 0.30 -0.1
11,948 - MPMX20_00011 0.31 +0.4
11,948 - MPMX20_00011 0.31 -0.4
11,954 + MPMX20_00011 0.31 -0.4
11,955 - MPMX20_00011 0.31 -0.4
11,963 - MPMX20_00011 0.32 -1.6
11,994 - MPMX20_00011 0.35 -0.1
11,994 - MPMX20_00011 0.35 -1.7
12,019 + MPMX20_00011 0.37 -0.7
12,019 + MPMX20_00011 0.37 +1.2
12,027 - MPMX20_00011 0.38 +0.4
12,027 - MPMX20_00011 0.38 +1.2
12,027 - MPMX20_00011 0.38 -1.6
12,034 + MPMX20_00011 0.38 +2.7
12,034 + MPMX20_00011 0.38 -0.5
12,034 + MPMX20_00011 0.38 -0.3
12,034 + MPMX20_00011 0.38 +1.7
12,042 + MPMX20_00011 0.39 -2.1
12,044 + MPMX20_00011 0.39 -0.0
12,052 - MPMX20_00011 0.40 +0.7
12,104 - MPMX20_00011 0.44 +1.2
12,111 - MPMX20_00011 0.45 -0.6
12,136 + MPMX20_00011 0.47 -0.9
12,220 - MPMX20_00011 0.54 +1.7
12,274 + MPMX20_00011 0.59 +0.2
12,320 + MPMX20_00011 0.63 -0.4
12,320 + MPMX20_00011 0.63 -1.2
12,366 + MPMX20_00011 0.67 +0.3
12,498 + MPMX20_00011 0.79 -2.5
12,525 - MPMX20_00011 0.81 -1.3
12,530 - MPMX20_00011 0.81 -1.9
12,535 - MPMX20_00011 0.82 -0.3
12,535 - MPMX20_00011 0.82 +2.7
12,553 + MPMX20_00011 0.83 +1.7
12,558 + MPMX20_00011 0.84 +1.7
12,664 - -0.8
12,694 + -0.3
12,694 + +0.4
12,694 + -1.1
12,695 + -0.1
12,702 - -1.8
12,702 - -1.5
12,727 - -0.3
12,729 + +1.2
12,737 + +0.0
12,790 + -0.3
12,812 - +2.7
12,889 - +0.2
12,904 + +0.2
12,904 + -0.1
12,904 + -0.3
12,904 + -1.2
12,904 + +1.2
12,904 + +0.1
12,912 - -0.4
12,912 - -0.5
12,912 - +0.9
12,912 - -0.7
12,912 - -0.1
12,912 - +0.4
12,912 - +0.0
12,912 - -0.3
12,941 + +0.6
12,946 - -1.5
12,956 + -0.7
12,963 - -0.3
12,969 - +0.5
12,969 - -0.2
13,046 + MPMX20_00012 0.14 -0.1
13,054 - MPMX20_00012 0.15 -1.8
13,148 + MPMX20_00012 0.22 -0.6
13,223 - MPMX20_00012 0.28 -0.5
13,289 - MPMX20_00012 0.33 +0.4
13,295 - MPMX20_00012 0.34 -1.3
13,297 - MPMX20_00012 0.34 +1.5
13,305 - MPMX20_00012 0.34 -1.3
13,305 - MPMX20_00012 0.34 -1.0
13,348 - MPMX20_00012 0.38 -0.5
13,356 + MPMX20_00012 0.38 +0.9
13,364 - MPMX20_00012 0.39 +2.7
13,364 - MPMX20_00012 0.39 -1.0
13,428 - MPMX20_00012 0.44 -0.8
13,428 - MPMX20_00012 0.44 -0.9
13,502 + MPMX20_00012 0.50 +0.4
13,547 + MPMX20_00012 0.53 -2.7
13,547 + MPMX20_00012 0.53 -0.8
13,547 + MPMX20_00012 0.53 -0.9
13,555 - MPMX20_00012 0.54 -0.7
13,599 - MPMX20_00012 0.57 -0.6
13,607 + MPMX20_00012 0.58 +0.4
13,618 + MPMX20_00012 0.59 -1.4
13,618 + MPMX20_00012 0.59 +1.2
13,618 + MPMX20_00012 0.59 +0.2
13,624 - MPMX20_00012 0.59 +0.7
13,626 - MPMX20_00012 0.59 -0.3
13,626 - MPMX20_00012 0.59 +1.7
13,675 - MPMX20_00012 0.63 -0.1
13,729 + MPMX20_00012 0.67 +1.4
13,735 - MPMX20_00012 0.68 -0.6

Or see this region's nucleotide sequence