Experiment: 0.1X LB plate, Mixed culture; Bacillus pumilus TBS_065 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00009 and MPMX20_00010 overlap by 17 nucleotides MPMX20_00010 and MPMX20_00011 overlap by 4 nucleotides MPMX20_00011 and MPMX20_00012 are separated by 117 nucleotides
MPMX20_00009: MPMX20_00009 - putative 2-dehydro-3-deoxygalactonokinase DgoK1, at 10,119 to 10,997
_00009
MPMX20_00010: MPMX20_00010 - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase, at 10,981 to 11,598
_00010
MPMX20_00011: MPMX20_00011 - D-galactonate dehydratase, at 11,595 to 12,743
_00011
MPMX20_00012: MPMX20_00012 - D-galactonate transporter, at 12,861 to 14,153
_00012
Position (kb)
11
12
13 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 10.676 kb on - strand, within MPMX20_00009 at 10.692 kb on + strand, within MPMX20_00009 at 10.695 kb on - strand, within MPMX20_00009 at 10.697 kb on + strand, within MPMX20_00009 at 10.705 kb on - strand, within MPMX20_00009 at 10.776 kb on - strand, within MPMX20_00009 at 10.827 kb on - strand, within MPMX20_00009 at 10.853 kb on - strand, within MPMX20_00009 at 10.862 kb on - strand, within MPMX20_00009 at 11.009 kb on + strand at 11.009 kb on + strand at 11.009 kb on + strand at 11.009 kb on + strand at 11.017 kb on - strand at 11.209 kb on + strand, within MPMX20_00010 at 11.274 kb on + strand, within MPMX20_00010 at 11.386 kb on + strand, within MPMX20_00010 at 11.394 kb on - strand, within MPMX20_00010 at 11.433 kb on - strand, within MPMX20_00010 at 11.433 kb on - strand, within MPMX20_00010 at 11.475 kb on + strand, within MPMX20_00010 at 11.500 kb on + strand, within MPMX20_00010 at 11.500 kb on + strand, within MPMX20_00010 at 11.500 kb on + strand, within MPMX20_00010 at 11.500 kb on + strand, within MPMX20_00010 at 11.500 kb on + strand, within MPMX20_00010 at 11.508 kb on - strand, within MPMX20_00010 at 11.508 kb on - strand, within MPMX20_00010 at 11.546 kb on + strand at 11.586 kb on - strand at 11.621 kb on + strand at 11.675 kb on - strand at 11.675 kb on - strand at 11.688 kb on - strand at 11.736 kb on - strand, within MPMX20_00011 at 11.754 kb on + strand, within MPMX20_00011 at 11.798 kb on - strand, within MPMX20_00011 at 11.813 kb on - strand, within MPMX20_00011 at 11.826 kb on + strand, within MPMX20_00011 at 11.826 kb on + strand, within MPMX20_00011 at 11.826 kb on + strand, within MPMX20_00011 at 11.826 kb on + strand, within MPMX20_00011 at 11.826 kb on + strand, within MPMX20_00011 at 11.826 kb on + strand, within MPMX20_00011 at 11.826 kb on + strand, within MPMX20_00011 at 11.834 kb on - strand, within MPMX20_00011 at 11.834 kb on - strand, within MPMX20_00011 at 11.834 kb on - strand, within MPMX20_00011 at 11.834 kb on - strand, within MPMX20_00011 at 11.834 kb on - strand, within MPMX20_00011 at 11.834 kb on - strand, within MPMX20_00011 at 11.834 kb on - strand, within MPMX20_00011 at 11.861 kb on - strand, within MPMX20_00011 at 11.940 kb on + strand, within MPMX20_00011 at 11.948 kb on - strand, within MPMX20_00011 at 11.948 kb on - strand, within MPMX20_00011 at 11.954 kb on + strand, within MPMX20_00011 at 11.955 kb on - strand, within MPMX20_00011 at 11.963 kb on - strand, within MPMX20_00011 at 11.994 kb on - strand, within MPMX20_00011 at 11.994 kb on - strand, within MPMX20_00011 at 12.019 kb on + strand, within MPMX20_00011 at 12.019 kb on + strand, within MPMX20_00011 at 12.027 kb on - strand, within MPMX20_00011 at 12.027 kb on - strand, within MPMX20_00011 at 12.027 kb on - strand, within MPMX20_00011 at 12.034 kb on + strand, within MPMX20_00011 at 12.034 kb on + strand, within MPMX20_00011 at 12.034 kb on + strand, within MPMX20_00011 at 12.034 kb on + strand, within MPMX20_00011 at 12.042 kb on + strand, within MPMX20_00011 at 12.044 kb on + strand, within MPMX20_00011 at 12.052 kb on - strand, within MPMX20_00011 at 12.104 kb on - strand, within MPMX20_00011 at 12.111 kb on - strand, within MPMX20_00011 at 12.136 kb on + strand, within MPMX20_00011 at 12.220 kb on - strand, within MPMX20_00011 at 12.274 kb on + strand, within MPMX20_00011 at 12.320 kb on + strand, within MPMX20_00011 at 12.320 kb on + strand, within MPMX20_00011 at 12.366 kb on + strand, within MPMX20_00011 at 12.498 kb on + strand, within MPMX20_00011 at 12.525 kb on - strand, within MPMX20_00011 at 12.530 kb on - strand, within MPMX20_00011 at 12.535 kb on - strand, within MPMX20_00011 at 12.535 kb on - strand, within MPMX20_00011 at 12.553 kb on + strand, within MPMX20_00011 at 12.558 kb on + strand, within MPMX20_00011 at 12.664 kb on - strand at 12.694 kb on + strand at 12.694 kb on + strand at 12.694 kb on + strand at 12.695 kb on + strand at 12.702 kb on - strand at 12.702 kb on - strand at 12.727 kb on - strand at 12.729 kb on + strand at 12.737 kb on + strand at 12.790 kb on + strand at 12.812 kb on - strand at 12.889 kb on - strand at 12.904 kb on + strand at 12.904 kb on + strand at 12.904 kb on + strand at 12.904 kb on + strand at 12.904 kb on + strand at 12.904 kb on + strand at 12.912 kb on - strand at 12.912 kb on - strand at 12.912 kb on - strand at 12.912 kb on - strand at 12.912 kb on - strand at 12.912 kb on - strand at 12.912 kb on - strand at 12.912 kb on - strand at 12.941 kb on + strand at 12.946 kb on - strand at 12.956 kb on + strand at 12.963 kb on - strand at 12.969 kb on - strand at 12.969 kb on - strand at 13.046 kb on + strand, within MPMX20_00012 at 13.054 kb on - strand, within MPMX20_00012 at 13.148 kb on + strand, within MPMX20_00012 at 13.223 kb on - strand, within MPMX20_00012 at 13.289 kb on - strand, within MPMX20_00012 at 13.295 kb on - strand, within MPMX20_00012 at 13.297 kb on - strand, within MPMX20_00012 at 13.305 kb on - strand, within MPMX20_00012 at 13.305 kb on - strand, within MPMX20_00012 at 13.348 kb on - strand, within MPMX20_00012 at 13.356 kb on + strand, within MPMX20_00012 at 13.364 kb on - strand, within MPMX20_00012 at 13.364 kb on - strand, within MPMX20_00012 at 13.428 kb on - strand, within MPMX20_00012 at 13.428 kb on - strand, within MPMX20_00012 at 13.502 kb on + strand, within MPMX20_00012 at 13.547 kb on + strand, within MPMX20_00012 at 13.547 kb on + strand, within MPMX20_00012 at 13.547 kb on + strand, within MPMX20_00012 at 13.555 kb on - strand, within MPMX20_00012 at 13.599 kb on - strand, within MPMX20_00012 at 13.607 kb on + strand, within MPMX20_00012 at 13.618 kb on + strand, within MPMX20_00012 at 13.618 kb on + strand, within MPMX20_00012 at 13.618 kb on + strand, within MPMX20_00012 at 13.624 kb on - strand, within MPMX20_00012 at 13.626 kb on - strand, within MPMX20_00012 at 13.626 kb on - strand, within MPMX20_00012 at 13.675 kb on - strand, within MPMX20_00012 at 13.729 kb on + strand, within MPMX20_00012 at 13.735 kb on - strand, within MPMX20_00012
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Bacillus pumilus TBS_065 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 10,676 - MPMX20_00009 0.63 -0.4 10,692 + MPMX20_00009 0.65 -1.9 10,695 - MPMX20_00009 0.66 -0.4 10,697 + MPMX20_00009 0.66 -0.4 10,705 - MPMX20_00009 0.67 +0.3 10,776 - MPMX20_00009 0.75 +1.7 10,827 - MPMX20_00009 0.81 +0.6 10,853 - MPMX20_00009 0.84 +1.7 10,862 - MPMX20_00009 0.85 +0.7 11,009 + -0.9 11,009 + -1.5 11,009 + -0.1 11,009 + -1.2 11,017 - +0.7 11,209 + MPMX20_00010 0.37 -2.1 11,274 + MPMX20_00010 0.47 -1.9 11,386 + MPMX20_00010 0.66 -0.8 11,394 - MPMX20_00010 0.67 -1.7 11,433 - MPMX20_00010 0.73 -0.7 11,433 - MPMX20_00010 0.73 -1.5 11,475 + MPMX20_00010 0.80 +1.2 11,500 + MPMX20_00010 0.84 -2.1 11,500 + MPMX20_00010 0.84 -1.1 11,500 + MPMX20_00010 0.84 -1.2 11,500 + MPMX20_00010 0.84 -0.7 11,500 + MPMX20_00010 0.84 -0.7 11,508 - MPMX20_00010 0.85 -0.4 11,508 - MPMX20_00010 0.85 +1.7 11,546 + -0.6 11,586 - -1.2 11,621 + -0.7 11,675 - +0.2 11,675 - -0.5 11,688 - -1.0 11,736 - MPMX20_00011 0.12 +1.2 11,754 + MPMX20_00011 0.14 -1.0 11,798 - MPMX20_00011 0.18 -0.6 11,813 - MPMX20_00011 0.19 -0.8 11,826 + MPMX20_00011 0.20 -0.6 11,826 + MPMX20_00011 0.20 +2.2 11,826 + MPMX20_00011 0.20 -0.4 11,826 + MPMX20_00011 0.20 +1.0 11,826 + MPMX20_00011 0.20 -0.2 11,826 + MPMX20_00011 0.20 +1.2 11,826 + MPMX20_00011 0.20 -1.8 11,834 - MPMX20_00011 0.21 +0.7 11,834 - MPMX20_00011 0.21 +1.2 11,834 - MPMX20_00011 0.21 -0.3 11,834 - MPMX20_00011 0.21 -1.6 11,834 - MPMX20_00011 0.21 -0.7 11,834 - MPMX20_00011 0.21 +1.2 11,834 - MPMX20_00011 0.21 -1.3 11,861 - MPMX20_00011 0.23 -0.2 11,940 + MPMX20_00011 0.30 -0.1 11,948 - MPMX20_00011 0.31 +0.4 11,948 - MPMX20_00011 0.31 -0.4 11,954 + MPMX20_00011 0.31 -0.4 11,955 - MPMX20_00011 0.31 -0.4 11,963 - MPMX20_00011 0.32 -1.6 11,994 - MPMX20_00011 0.35 -0.1 11,994 - MPMX20_00011 0.35 -1.7 12,019 + MPMX20_00011 0.37 -0.7 12,019 + MPMX20_00011 0.37 +1.2 12,027 - MPMX20_00011 0.38 +0.4 12,027 - MPMX20_00011 0.38 +1.2 12,027 - MPMX20_00011 0.38 -1.6 12,034 + MPMX20_00011 0.38 +2.7 12,034 + MPMX20_00011 0.38 -0.5 12,034 + MPMX20_00011 0.38 -0.3 12,034 + MPMX20_00011 0.38 +1.7 12,042 + MPMX20_00011 0.39 -2.1 12,044 + MPMX20_00011 0.39 -0.0 12,052 - MPMX20_00011 0.40 +0.7 12,104 - MPMX20_00011 0.44 +1.2 12,111 - MPMX20_00011 0.45 -0.6 12,136 + MPMX20_00011 0.47 -0.9 12,220 - MPMX20_00011 0.54 +1.7 12,274 + MPMX20_00011 0.59 +0.2 12,320 + MPMX20_00011 0.63 -0.4 12,320 + MPMX20_00011 0.63 -1.2 12,366 + MPMX20_00011 0.67 +0.3 12,498 + MPMX20_00011 0.79 -2.5 12,525 - MPMX20_00011 0.81 -1.3 12,530 - MPMX20_00011 0.81 -1.9 12,535 - MPMX20_00011 0.82 -0.3 12,535 - MPMX20_00011 0.82 +2.7 12,553 + MPMX20_00011 0.83 +1.7 12,558 + MPMX20_00011 0.84 +1.7 12,664 - -0.8 12,694 + -0.3 12,694 + +0.4 12,694 + -1.1 12,695 + -0.1 12,702 - -1.8 12,702 - -1.5 12,727 - -0.3 12,729 + +1.2 12,737 + +0.0 12,790 + -0.3 12,812 - +2.7 12,889 - +0.2 12,904 + +0.2 12,904 + -0.1 12,904 + -0.3 12,904 + -1.2 12,904 + +1.2 12,904 + +0.1 12,912 - -0.4 12,912 - -0.5 12,912 - +0.9 12,912 - -0.7 12,912 - -0.1 12,912 - +0.4 12,912 - +0.0 12,912 - -0.3 12,941 + +0.6 12,946 - -1.5 12,956 + -0.7 12,963 - -0.3 12,969 - +0.5 12,969 - -0.2 13,046 + MPMX20_00012 0.14 -0.1 13,054 - MPMX20_00012 0.15 -1.8 13,148 + MPMX20_00012 0.22 -0.6 13,223 - MPMX20_00012 0.28 -0.5 13,289 - MPMX20_00012 0.33 +0.4 13,295 - MPMX20_00012 0.34 -1.3 13,297 - MPMX20_00012 0.34 +1.5 13,305 - MPMX20_00012 0.34 -1.3 13,305 - MPMX20_00012 0.34 -1.0 13,348 - MPMX20_00012 0.38 -0.5 13,356 + MPMX20_00012 0.38 +0.9 13,364 - MPMX20_00012 0.39 +2.7 13,364 - MPMX20_00012 0.39 -1.0 13,428 - MPMX20_00012 0.44 -0.8 13,428 - MPMX20_00012 0.44 -0.9 13,502 + MPMX20_00012 0.50 +0.4 13,547 + MPMX20_00012 0.53 -2.7 13,547 + MPMX20_00012 0.53 -0.8 13,547 + MPMX20_00012 0.53 -0.9 13,555 - MPMX20_00012 0.54 -0.7 13,599 - MPMX20_00012 0.57 -0.6 13,607 + MPMX20_00012 0.58 +0.4 13,618 + MPMX20_00012 0.59 -1.4 13,618 + MPMX20_00012 0.59 +1.2 13,618 + MPMX20_00012 0.59 +0.2 13,624 - MPMX20_00012 0.59 +0.7 13,626 - MPMX20_00012 0.59 -0.3 13,626 - MPMX20_00012 0.59 +1.7 13,675 - MPMX20_00012 0.63 -0.1 13,729 + MPMX20_00012 0.67 +1.4 13,735 - MPMX20_00012 0.68 -0.6
Or see this region's nucleotide sequence