Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04338

Experiment: M9 plate, Mixed culture; Bacillus pumilus TBS_065 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04337 and MPMX20_04338 are separated by 135 nucleotidesMPMX20_04338 and MPMX20_04339 are separated by 251 nucleotides MPMX20_04337: MPMX20_04337 - 4-aminobutyrate aminotransferase PuuE, at 4,531,725 to 4,532,990 _04337 MPMX20_04338: MPMX20_04338 - RNA polymerase sigma factor RpoH, at 4,533,126 to 4,533,983 _04338 MPMX20_04339: MPMX20_04339 - Cell division protein FtsX, at 4,534,235 to 4,535,290 _04339 Position (kb) 4533 4534Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7 8 9 10 11at 4532.128 kb on + strand, within MPMX20_04337at 4532.134 kb on + strand, within MPMX20_04337at 4532.226 kb on - strand, within MPMX20_04337at 4532.369 kb on + strand, within MPMX20_04337at 4532.419 kb on - strand, within MPMX20_04337at 4532.455 kb on - strand, within MPMX20_04337at 4532.466 kb on + strand, within MPMX20_04337at 4532.499 kb on - strand, within MPMX20_04337at 4532.567 kb on + strand, within MPMX20_04337at 4532.603 kb on + strand, within MPMX20_04337at 4532.617 kb on + strand, within MPMX20_04337at 4532.625 kb on - strand, within MPMX20_04337at 4532.662 kb on - strand, within MPMX20_04337at 4532.662 kb on - strand, within MPMX20_04337at 4532.699 kb on + strand, within MPMX20_04337at 4532.699 kb on + strand, within MPMX20_04337at 4532.745 kb on + strand, within MPMX20_04337at 4532.753 kb on - strand, within MPMX20_04337at 4532.771 kb on + strand, within MPMX20_04337at 4532.773 kb on - strand, within MPMX20_04337at 4532.830 kb on + strand, within MPMX20_04337at 4532.922 kb on - strandat 4532.922 kb on - strandat 4532.978 kb on - strandat 4532.990 kb on - strandat 4533.015 kb on + strandat 4533.023 kb on - strandat 4533.026 kb on + strandat 4533.034 kb on - strandat 4533.912 kb on - strandat 4534.015 kb on - strandat 4534.025 kb on - strandat 4534.035 kb on - strandat 4534.161 kb on - strandat 4534.201 kb on + strandat 4534.201 kb on + strandat 4534.269 kb on + strandat 4534.277 kb on - strandat 4534.277 kb on - strandat 4534.277 kb on - strandat 4534.277 kb on - strandat 4534.277 kb on - strandat 4534.277 kb on - strandat 4534.300 kb on - strandat 4534.300 kb on - strandat 4534.385 kb on + strand, within MPMX20_04339at 4534.478 kb on - strand, within MPMX20_04339at 4534.489 kb on + strand, within MPMX20_04339at 4534.558 kb on + strand, within MPMX20_04339at 4534.634 kb on - strand, within MPMX20_04339at 4534.795 kb on + strand, within MPMX20_04339at 4534.803 kb on - strand, within MPMX20_04339at 4534.805 kb on + strand, within MPMX20_04339at 4534.813 kb on - strand, within MPMX20_04339at 4534.817 kb on + strand, within MPMX20_04339at 4534.817 kb on + strand, within MPMX20_04339at 4534.822 kb on + strand, within MPMX20_04339at 4534.825 kb on - strand, within MPMX20_04339at 4534.844 kb on + strand, within MPMX20_04339at 4534.886 kb on + strand, within MPMX20_04339at 4534.941 kb on + strand, within MPMX20_04339at 4534.956 kb on + strand, within MPMX20_04339at 4534.956 kb on + strand, within MPMX20_04339at 4534.964 kb on - strand, within MPMX20_04339at 4534.974 kb on + strand, within MPMX20_04339at 4534.974 kb on + strand, within MPMX20_04339at 4534.974 kb on + strand, within MPMX20_04339at 4534.974 kb on + strand, within MPMX20_04339at 4534.974 kb on + strand, within MPMX20_04339at 4534.974 kb on + strand, within MPMX20_04339at 4534.974 kb on + strand, within MPMX20_04339at 4534.977 kb on - strand, within MPMX20_04339at 4534.977 kb on - strand, within MPMX20_04339at 4534.982 kb on - strand, within MPMX20_04339at 4534.982 kb on - strand, within MPMX20_04339at 4534.982 kb on - strand, within MPMX20_04339

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, Mixed culture; Bacillus pumilus TBS_065 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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4,532,128 + MPMX20_04337 0.32 -0.5
4,532,134 + MPMX20_04337 0.32 -0.8
4,532,226 - MPMX20_04337 0.40 +0.9
4,532,369 + MPMX20_04337 0.51 -0.2
4,532,419 - MPMX20_04337 0.55 +0.3
4,532,455 - MPMX20_04337 0.58 +1.2
4,532,466 + MPMX20_04337 0.59 +0.1
4,532,499 - MPMX20_04337 0.61 +0.9
4,532,567 + MPMX20_04337 0.67 -0.7
4,532,603 + MPMX20_04337 0.69 -1.8
4,532,617 + MPMX20_04337 0.70 -1.1
4,532,625 - MPMX20_04337 0.71 -2.4
4,532,662 - MPMX20_04337 0.74 -0.5
4,532,662 - MPMX20_04337 0.74 +0.5
4,532,699 + MPMX20_04337 0.77 -0.7
4,532,699 + MPMX20_04337 0.77 -1.2
4,532,745 + MPMX20_04337 0.81 +1.2
4,532,753 - MPMX20_04337 0.81 -0.9
4,532,771 + MPMX20_04337 0.83 +0.2
4,532,773 - MPMX20_04337 0.83 +0.3
4,532,830 + MPMX20_04337 0.87 -0.8
4,532,922 - -0.4
4,532,922 - -0.3
4,532,978 - +0.0
4,532,990 - -0.1
4,533,015 + -1.1
4,533,023 - -1.3
4,533,026 + -0.8
4,533,034 - +4.4
4,533,912 - +0.9
4,534,015 - +0.9
4,534,025 - -1.7
4,534,035 - +0.9
4,534,161 - -0.3
4,534,201 + -1.7
4,534,201 + -2.5
4,534,269 + +0.1
4,534,277 - -1.3
4,534,277 - +1.2
4,534,277 - -0.3
4,534,277 - +0.5
4,534,277 - +2.3
4,534,277 - +1.3
4,534,300 - +1.5
4,534,300 - -0.9
4,534,385 + MPMX20_04339 0.14 -1.2
4,534,478 - MPMX20_04339 0.23 +0.0
4,534,489 + MPMX20_04339 0.24 +11.5
4,534,558 + MPMX20_04339 0.31 -0.7
4,534,634 - MPMX20_04339 0.38 +2.1
4,534,795 + MPMX20_04339 0.53 +0.7
4,534,803 - MPMX20_04339 0.54 -0.1
4,534,805 + MPMX20_04339 0.54 -0.4
4,534,813 - MPMX20_04339 0.55 +1.2
4,534,817 + MPMX20_04339 0.55 +5.4
4,534,817 + MPMX20_04339 0.55 +0.7
4,534,822 + MPMX20_04339 0.56 +0.5
4,534,825 - MPMX20_04339 0.56 +4.0
4,534,844 + MPMX20_04339 0.58 +1.3
4,534,886 + MPMX20_04339 0.62 +1.4
4,534,941 + MPMX20_04339 0.67 +10.2
4,534,956 + MPMX20_04339 0.68 -0.2
4,534,956 + MPMX20_04339 0.68 +0.2
4,534,964 - MPMX20_04339 0.69 -0.2
4,534,974 + MPMX20_04339 0.70 +5.6
4,534,974 + MPMX20_04339 0.70 +1.7
4,534,974 + MPMX20_04339 0.70 +0.2
4,534,974 + MPMX20_04339 0.70 +4.1
4,534,974 + MPMX20_04339 0.70 +0.8
4,534,974 + MPMX20_04339 0.70 -0.3
4,534,974 + MPMX20_04339 0.70 -0.4
4,534,977 - MPMX20_04339 0.70 +1.5
4,534,977 - MPMX20_04339 0.70 +2.3
4,534,982 - MPMX20_04339 0.71 +0.1
4,534,982 - MPMX20_04339 0.71 +0.6
4,534,982 - MPMX20_04339 0.71 +11.6

Or see this region's nucleotide sequence