Experiment: M9 plate, Mixed culture; Bacillus pumilus TBS_065 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04337 and MPMX20_04338 are separated by 135 nucleotides MPMX20_04338 and MPMX20_04339 are separated by 251 nucleotides
MPMX20_04337: MPMX20_04337 - 4-aminobutyrate aminotransferase PuuE, at 4,531,725 to 4,532,990
_04337
MPMX20_04338: MPMX20_04338 - RNA polymerase sigma factor RpoH, at 4,533,126 to 4,533,983
_04338
MPMX20_04339: MPMX20_04339 - Cell division protein FtsX, at 4,534,235 to 4,535,290
_04339
Position (kb)
4533
4534 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6
7
8
9
10
11 at 4532.128 kb on + strand, within MPMX20_04337 at 4532.134 kb on + strand, within MPMX20_04337 at 4532.226 kb on - strand, within MPMX20_04337 at 4532.369 kb on + strand, within MPMX20_04337 at 4532.419 kb on - strand, within MPMX20_04337 at 4532.455 kb on - strand, within MPMX20_04337 at 4532.466 kb on + strand, within MPMX20_04337 at 4532.499 kb on - strand, within MPMX20_04337 at 4532.567 kb on + strand, within MPMX20_04337 at 4532.603 kb on + strand, within MPMX20_04337 at 4532.617 kb on + strand, within MPMX20_04337 at 4532.625 kb on - strand, within MPMX20_04337 at 4532.662 kb on - strand, within MPMX20_04337 at 4532.662 kb on - strand, within MPMX20_04337 at 4532.699 kb on + strand, within MPMX20_04337 at 4532.699 kb on + strand, within MPMX20_04337 at 4532.745 kb on + strand, within MPMX20_04337 at 4532.753 kb on - strand, within MPMX20_04337 at 4532.771 kb on + strand, within MPMX20_04337 at 4532.773 kb on - strand, within MPMX20_04337 at 4532.830 kb on + strand, within MPMX20_04337 at 4532.922 kb on - strand at 4532.922 kb on - strand at 4532.978 kb on - strand at 4532.990 kb on - strand at 4533.015 kb on + strand at 4533.023 kb on - strand at 4533.026 kb on + strand at 4533.034 kb on - strand at 4533.912 kb on - strand at 4534.015 kb on - strand at 4534.025 kb on - strand at 4534.035 kb on - strand at 4534.161 kb on - strand at 4534.201 kb on + strand at 4534.201 kb on + strand at 4534.269 kb on + strand at 4534.277 kb on - strand at 4534.277 kb on - strand at 4534.277 kb on - strand at 4534.277 kb on - strand at 4534.277 kb on - strand at 4534.277 kb on - strand at 4534.300 kb on - strand at 4534.300 kb on - strand at 4534.385 kb on + strand, within MPMX20_04339 at 4534.478 kb on - strand, within MPMX20_04339 at 4534.489 kb on + strand, within MPMX20_04339 at 4534.558 kb on + strand, within MPMX20_04339 at 4534.634 kb on - strand, within MPMX20_04339 at 4534.795 kb on + strand, within MPMX20_04339 at 4534.803 kb on - strand, within MPMX20_04339 at 4534.805 kb on + strand, within MPMX20_04339 at 4534.813 kb on - strand, within MPMX20_04339 at 4534.817 kb on + strand, within MPMX20_04339 at 4534.817 kb on + strand, within MPMX20_04339 at 4534.822 kb on + strand, within MPMX20_04339 at 4534.825 kb on - strand, within MPMX20_04339 at 4534.844 kb on + strand, within MPMX20_04339 at 4534.886 kb on + strand, within MPMX20_04339 at 4534.941 kb on + strand, within MPMX20_04339 at 4534.956 kb on + strand, within MPMX20_04339 at 4534.956 kb on + strand, within MPMX20_04339 at 4534.964 kb on - strand, within MPMX20_04339 at 4534.974 kb on + strand, within MPMX20_04339 at 4534.974 kb on + strand, within MPMX20_04339 at 4534.974 kb on + strand, within MPMX20_04339 at 4534.974 kb on + strand, within MPMX20_04339 at 4534.974 kb on + strand, within MPMX20_04339 at 4534.974 kb on + strand, within MPMX20_04339 at 4534.974 kb on + strand, within MPMX20_04339 at 4534.977 kb on - strand, within MPMX20_04339 at 4534.977 kb on - strand, within MPMX20_04339 at 4534.982 kb on - strand, within MPMX20_04339 at 4534.982 kb on - strand, within MPMX20_04339 at 4534.982 kb on - strand, within MPMX20_04339
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, Mixed culture; Bacillus pumilus TBS_065 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 4,532,128 + MPMX20_04337 0.32 -0.5 4,532,134 + MPMX20_04337 0.32 -0.8 4,532,226 - MPMX20_04337 0.40 +0.9 4,532,369 + MPMX20_04337 0.51 -0.2 4,532,419 - MPMX20_04337 0.55 +0.3 4,532,455 - MPMX20_04337 0.58 +1.2 4,532,466 + MPMX20_04337 0.59 +0.1 4,532,499 - MPMX20_04337 0.61 +0.9 4,532,567 + MPMX20_04337 0.67 -0.7 4,532,603 + MPMX20_04337 0.69 -1.8 4,532,617 + MPMX20_04337 0.70 -1.1 4,532,625 - MPMX20_04337 0.71 -2.4 4,532,662 - MPMX20_04337 0.74 -0.5 4,532,662 - MPMX20_04337 0.74 +0.5 4,532,699 + MPMX20_04337 0.77 -0.7 4,532,699 + MPMX20_04337 0.77 -1.2 4,532,745 + MPMX20_04337 0.81 +1.2 4,532,753 - MPMX20_04337 0.81 -0.9 4,532,771 + MPMX20_04337 0.83 +0.2 4,532,773 - MPMX20_04337 0.83 +0.3 4,532,830 + MPMX20_04337 0.87 -0.8 4,532,922 - -0.4 4,532,922 - -0.3 4,532,978 - +0.0 4,532,990 - -0.1 4,533,015 + -1.1 4,533,023 - -1.3 4,533,026 + -0.8 4,533,034 - +4.4 4,533,912 - +0.9 4,534,015 - +0.9 4,534,025 - -1.7 4,534,035 - +0.9 4,534,161 - -0.3 4,534,201 + -1.7 4,534,201 + -2.5 4,534,269 + +0.1 4,534,277 - -1.3 4,534,277 - +1.2 4,534,277 - -0.3 4,534,277 - +0.5 4,534,277 - +2.3 4,534,277 - +1.3 4,534,300 - +1.5 4,534,300 - -0.9 4,534,385 + MPMX20_04339 0.14 -1.2 4,534,478 - MPMX20_04339 0.23 +0.0 4,534,489 + MPMX20_04339 0.24 +11.5 4,534,558 + MPMX20_04339 0.31 -0.7 4,534,634 - MPMX20_04339 0.38 +2.1 4,534,795 + MPMX20_04339 0.53 +0.7 4,534,803 - MPMX20_04339 0.54 -0.1 4,534,805 + MPMX20_04339 0.54 -0.4 4,534,813 - MPMX20_04339 0.55 +1.2 4,534,817 + MPMX20_04339 0.55 +5.4 4,534,817 + MPMX20_04339 0.55 +0.7 4,534,822 + MPMX20_04339 0.56 +0.5 4,534,825 - MPMX20_04339 0.56 +4.0 4,534,844 + MPMX20_04339 0.58 +1.3 4,534,886 + MPMX20_04339 0.62 +1.4 4,534,941 + MPMX20_04339 0.67 +10.2 4,534,956 + MPMX20_04339 0.68 -0.2 4,534,956 + MPMX20_04339 0.68 +0.2 4,534,964 - MPMX20_04339 0.69 -0.2 4,534,974 + MPMX20_04339 0.70 +5.6 4,534,974 + MPMX20_04339 0.70 +1.7 4,534,974 + MPMX20_04339 0.70 +0.2 4,534,974 + MPMX20_04339 0.70 +4.1 4,534,974 + MPMX20_04339 0.70 +0.8 4,534,974 + MPMX20_04339 0.70 -0.3 4,534,974 + MPMX20_04339 0.70 -0.4 4,534,977 - MPMX20_04339 0.70 +1.5 4,534,977 - MPMX20_04339 0.70 +2.3 4,534,982 - MPMX20_04339 0.71 +0.1 4,534,982 - MPMX20_04339 0.71 +0.6 4,534,982 - MPMX20_04339 0.71 +11.6
Or see this region's nucleotide sequence