Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04065

Experiment: M9 plate, Mixed culture; Bacillus pumilus TBS_065 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04064 and MPMX20_04065 are separated by 45 nucleotidesMPMX20_04065 and MPMX20_04066 are separated by 142 nucleotides MPMX20_04064: MPMX20_04064 - hypothetical protein, at 4,260,156 to 4,261,163 _04064 MPMX20_04065: MPMX20_04065 - Tryptophan-specific transport protein, at 4,261,209 to 4,262,453 _04065 MPMX20_04066: MPMX20_04066 - ATP-dependent RNA helicase DeaD, at 4,262,596 to 4,264,500 _04066 Position (kb) 4261 4262 4263Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4260.229 kb on + strandat 4260.236 kb on - strandat 4260.237 kb on - strandat 4260.237 kb on - strandat 4260.311 kb on + strand, within MPMX20_04064at 4260.334 kb on + strand, within MPMX20_04064at 4260.342 kb on - strand, within MPMX20_04064at 4260.367 kb on + strand, within MPMX20_04064at 4260.367 kb on + strand, within MPMX20_04064at 4260.393 kb on + strand, within MPMX20_04064at 4260.445 kb on - strand, within MPMX20_04064at 4260.455 kb on + strand, within MPMX20_04064at 4260.455 kb on + strand, within MPMX20_04064at 4260.455 kb on + strand, within MPMX20_04064at 4260.597 kb on - strand, within MPMX20_04064at 4260.597 kb on - strand, within MPMX20_04064at 4260.597 kb on - strand, within MPMX20_04064at 4260.600 kb on + strand, within MPMX20_04064at 4260.604 kb on + strand, within MPMX20_04064at 4260.604 kb on + strand, within MPMX20_04064at 4260.612 kb on - strand, within MPMX20_04064at 4260.627 kb on + strand, within MPMX20_04064at 4260.675 kb on - strand, within MPMX20_04064at 4260.680 kb on - strand, within MPMX20_04064at 4260.680 kb on - strand, within MPMX20_04064at 4260.731 kb on - strand, within MPMX20_04064at 4260.757 kb on + strand, within MPMX20_04064at 4260.794 kb on - strand, within MPMX20_04064at 4260.811 kb on + strand, within MPMX20_04064at 4260.832 kb on - strand, within MPMX20_04064at 4260.892 kb on + strand, within MPMX20_04064at 4260.974 kb on + strand, within MPMX20_04064at 4260.974 kb on + strand, within MPMX20_04064at 4260.974 kb on + strand, within MPMX20_04064at 4260.979 kb on + strand, within MPMX20_04064at 4260.987 kb on - strand, within MPMX20_04064at 4260.998 kb on - strand, within MPMX20_04064at 4261.018 kb on + strand, within MPMX20_04064at 4261.036 kb on + strand, within MPMX20_04064at 4261.194 kb on + strandat 4261.195 kb on + strandat 4261.229 kb on + strandat 4261.488 kb on - strand, within MPMX20_04065at 4261.491 kb on + strand, within MPMX20_04065at 4261.491 kb on + strand, within MPMX20_04065at 4261.541 kb on + strand, within MPMX20_04065at 4261.547 kb on + strand, within MPMX20_04065at 4261.555 kb on - strand, within MPMX20_04065at 4261.604 kb on + strand, within MPMX20_04065at 4261.620 kb on + strand, within MPMX20_04065at 4261.628 kb on - strand, within MPMX20_04065at 4261.632 kb on + strand, within MPMX20_04065at 4261.633 kb on + strand, within MPMX20_04065at 4261.668 kb on + strand, within MPMX20_04065at 4261.676 kb on - strand, within MPMX20_04065at 4261.722 kb on - strand, within MPMX20_04065at 4261.773 kb on + strand, within MPMX20_04065at 4261.781 kb on - strand, within MPMX20_04065at 4261.781 kb on - strand, within MPMX20_04065at 4261.781 kb on - strand, within MPMX20_04065at 4261.843 kb on - strand, within MPMX20_04065at 4261.857 kb on - strand, within MPMX20_04065at 4261.906 kb on + strand, within MPMX20_04065at 4261.906 kb on + strand, within MPMX20_04065at 4261.914 kb on - strand, within MPMX20_04065at 4262.004 kb on + strand, within MPMX20_04065at 4262.017 kb on - strand, within MPMX20_04065at 4262.063 kb on - strand, within MPMX20_04065at 4262.122 kb on - strand, within MPMX20_04065at 4262.198 kb on - strand, within MPMX20_04065at 4262.210 kb on + strand, within MPMX20_04065at 4262.218 kb on - strand, within MPMX20_04065at 4262.271 kb on + strand, within MPMX20_04065at 4262.358 kb on - strandat 4262.427 kb on + strandat 4262.430 kb on - strandat 4262.628 kb on - strandat 4262.798 kb on - strand, within MPMX20_04066at 4263.011 kb on - strand, within MPMX20_04066at 4263.305 kb on - strand, within MPMX20_04066

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, Mixed culture; Bacillus pumilus TBS_065 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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4,260,229 + +0.1
4,260,236 - -1.6
4,260,237 - -1.4
4,260,237 - -0.6
4,260,311 + MPMX20_04064 0.15 +0.1
4,260,334 + MPMX20_04064 0.18 -0.6
4,260,342 - MPMX20_04064 0.18 -1.3
4,260,367 + MPMX20_04064 0.21 +0.3
4,260,367 + MPMX20_04064 0.21 +0.3
4,260,393 + MPMX20_04064 0.24 +0.5
4,260,445 - MPMX20_04064 0.29 +0.3
4,260,455 + MPMX20_04064 0.30 +0.2
4,260,455 + MPMX20_04064 0.30 -1.8
4,260,455 + MPMX20_04064 0.30 -2.0
4,260,597 - MPMX20_04064 0.44 +1.2
4,260,597 - MPMX20_04064 0.44 -0.5
4,260,597 - MPMX20_04064 0.44 -0.7
4,260,600 + MPMX20_04064 0.44 -0.5
4,260,604 + MPMX20_04064 0.44 +0.5
4,260,604 + MPMX20_04064 0.44 +1.3
4,260,612 - MPMX20_04064 0.45 +1.2
4,260,627 + MPMX20_04064 0.47 -0.8
4,260,675 - MPMX20_04064 0.51 +0.5
4,260,680 - MPMX20_04064 0.52 +0.1
4,260,680 - MPMX20_04064 0.52 +3.3
4,260,731 - MPMX20_04064 0.57 -0.1
4,260,757 + MPMX20_04064 0.60 +1.5
4,260,794 - MPMX20_04064 0.63 -0.1
4,260,811 + MPMX20_04064 0.65 +0.5
4,260,832 - MPMX20_04064 0.67 +0.5
4,260,892 + MPMX20_04064 0.73 +0.2
4,260,974 + MPMX20_04064 0.81 +0.5
4,260,974 + MPMX20_04064 0.81 -0.2
4,260,974 + MPMX20_04064 0.81 +0.3
4,260,979 + MPMX20_04064 0.82 +0.6
4,260,987 - MPMX20_04064 0.82 -1.6
4,260,998 - MPMX20_04064 0.84 +1.7
4,261,018 + MPMX20_04064 0.86 +0.9
4,261,036 + MPMX20_04064 0.87 +0.5
4,261,194 + +1.3
4,261,195 + +1.5
4,261,229 + +0.5
4,261,488 - MPMX20_04065 0.22 -1.8
4,261,491 + MPMX20_04065 0.23 -0.3
4,261,491 + MPMX20_04065 0.23 -0.6
4,261,541 + MPMX20_04065 0.27 +2.5
4,261,547 + MPMX20_04065 0.27 +0.9
4,261,555 - MPMX20_04065 0.28 -0.8
4,261,604 + MPMX20_04065 0.32 -0.3
4,261,620 + MPMX20_04065 0.33 +1.5
4,261,628 - MPMX20_04065 0.34 -0.3
4,261,632 + MPMX20_04065 0.34 -0.3
4,261,633 + MPMX20_04065 0.34 -0.7
4,261,668 + MPMX20_04065 0.37 -0.9
4,261,676 - MPMX20_04065 0.38 +0.1
4,261,722 - MPMX20_04065 0.41 -2.2
4,261,773 + MPMX20_04065 0.45 -0.1
4,261,781 - MPMX20_04065 0.46 +0.5
4,261,781 - MPMX20_04065 0.46 +0.6
4,261,781 - MPMX20_04065 0.46 -0.3
4,261,843 - MPMX20_04065 0.51 +0.1
4,261,857 - MPMX20_04065 0.52 +0.4
4,261,906 + MPMX20_04065 0.56 +1.5
4,261,906 + MPMX20_04065 0.56 -1.8
4,261,914 - MPMX20_04065 0.57 -1.3
4,262,004 + MPMX20_04065 0.64 -0.3
4,262,017 - MPMX20_04065 0.65 -1.0
4,262,063 - MPMX20_04065 0.69 +2.1
4,262,122 - MPMX20_04065 0.73 -0.1
4,262,198 - MPMX20_04065 0.79 -0.7
4,262,210 + MPMX20_04065 0.80 +0.9
4,262,218 - MPMX20_04065 0.81 -1.1
4,262,271 + MPMX20_04065 0.85 +0.4
4,262,358 - -0.7
4,262,427 + -0.0
4,262,430 - -1.9
4,262,628 - +0.1
4,262,798 - MPMX20_04066 0.11 -0.1
4,263,011 - MPMX20_04066 0.22 +0.9
4,263,305 - MPMX20_04066 0.37 +1.5

Or see this region's nucleotide sequence