Experiment: M9 plate, Mixed culture; Bacillus pumilus TBS_065 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03596 and MPMX20_03597 are separated by 1 nucleotides MPMX20_03597 and MPMX20_03598 are separated by 6 nucleotides MPMX20_03598 and MPMX20_03599 are separated by 119 nucleotides
MPMX20_03596: MPMX20_03596 - High-affinity nickel transport protein, at 3,785,287 to 3,786,309
_03596
MPMX20_03597: MPMX20_03597 - Carbamoyltransferase HypF, at 3,786,311 to 3,788,533
_03597
MPMX20_03598: MPMX20_03598 - Iron-sulfur protein, at 3,788,540 to 3,789,100
_03598
MPMX20_03599: MPMX20_03599 - HTH-type transcriptional regulator AscG, at 3,789,220 to 3,790,233
_03599
Position (kb)
3786
3787
3788
3789 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3785.362 kb on - strand at 3785.373 kb on + strand at 3785.416 kb on - strand, within MPMX20_03596 at 3785.435 kb on - strand, within MPMX20_03596 at 3785.461 kb on + strand, within MPMX20_03596 at 3785.488 kb on - strand, within MPMX20_03596 at 3785.507 kb on - strand, within MPMX20_03596 at 3785.542 kb on - strand, within MPMX20_03596 at 3785.605 kb on - strand, within MPMX20_03596 at 3785.607 kb on + strand, within MPMX20_03596 at 3785.607 kb on + strand, within MPMX20_03596 at 3785.607 kb on + strand, within MPMX20_03596 at 3785.638 kb on + strand, within MPMX20_03596 at 3785.651 kb on - strand, within MPMX20_03596 at 3785.772 kb on - strand, within MPMX20_03596 at 3785.786 kb on + strand, within MPMX20_03596 at 3785.877 kb on + strand, within MPMX20_03596 at 3785.900 kb on + strand, within MPMX20_03596 at 3786.019 kb on + strand, within MPMX20_03596 at 3786.048 kb on + strand, within MPMX20_03596 at 3786.056 kb on - strand, within MPMX20_03596 at 3786.084 kb on - strand, within MPMX20_03596 at 3786.167 kb on - strand, within MPMX20_03596 at 3786.195 kb on + strand, within MPMX20_03596 at 3786.207 kb on + strand at 3786.224 kb on + strand at 3786.232 kb on - strand at 3786.270 kb on + strand at 3786.292 kb on + strand at 3786.308 kb on - strand at 3786.378 kb on + strand at 3786.453 kb on - strand at 3786.513 kb on - strand at 3786.523 kb on + strand at 3786.532 kb on - strand at 3786.539 kb on - strand, within MPMX20_03597 at 3786.563 kb on - strand, within MPMX20_03597 at 3786.580 kb on - strand, within MPMX20_03597 at 3786.649 kb on - strand, within MPMX20_03597 at 3786.651 kb on + strand, within MPMX20_03597 at 3786.659 kb on - strand, within MPMX20_03597 at 3786.757 kb on - strand, within MPMX20_03597 at 3786.764 kb on + strand, within MPMX20_03597 at 3786.765 kb on + strand, within MPMX20_03597 at 3786.770 kb on + strand, within MPMX20_03597 at 3786.772 kb on - strand, within MPMX20_03597 at 3786.778 kb on - strand, within MPMX20_03597 at 3786.801 kb on + strand, within MPMX20_03597 at 3786.801 kb on + strand, within MPMX20_03597 at 3786.809 kb on - strand, within MPMX20_03597 at 3786.921 kb on - strand, within MPMX20_03597 at 3786.926 kb on - strand, within MPMX20_03597 at 3786.964 kb on - strand, within MPMX20_03597 at 3786.964 kb on - strand, within MPMX20_03597 at 3786.964 kb on - strand, within MPMX20_03597 at 3786.964 kb on - strand, within MPMX20_03597 at 3787.024 kb on - strand, within MPMX20_03597 at 3787.143 kb on + strand, within MPMX20_03597 at 3787.175 kb on + strand, within MPMX20_03597 at 3787.250 kb on + strand, within MPMX20_03597 at 3787.295 kb on + strand, within MPMX20_03597 at 3787.302 kb on + strand, within MPMX20_03597 at 3787.303 kb on - strand, within MPMX20_03597 at 3787.364 kb on + strand, within MPMX20_03597 at 3787.401 kb on - strand, within MPMX20_03597 at 3787.408 kb on + strand, within MPMX20_03597 at 3787.416 kb on - strand, within MPMX20_03597 at 3787.427 kb on + strand, within MPMX20_03597 at 3787.432 kb on + strand, within MPMX20_03597 at 3787.432 kb on + strand, within MPMX20_03597 at 3787.440 kb on - strand, within MPMX20_03597 at 3787.440 kb on - strand, within MPMX20_03597 at 3787.464 kb on + strand, within MPMX20_03597 at 3787.470 kb on - strand, within MPMX20_03597 at 3787.545 kb on + strand, within MPMX20_03597 at 3787.563 kb on + strand, within MPMX20_03597 at 3787.581 kb on - strand, within MPMX20_03597 at 3787.582 kb on - strand, within MPMX20_03597 at 3787.624 kb on + strand, within MPMX20_03597 at 3787.638 kb on + strand, within MPMX20_03597 at 3787.648 kb on + strand, within MPMX20_03597 at 3787.650 kb on - strand, within MPMX20_03597 at 3787.656 kb on - strand, within MPMX20_03597 at 3787.656 kb on - strand, within MPMX20_03597 at 3787.658 kb on + strand, within MPMX20_03597 at 3787.658 kb on + strand, within MPMX20_03597 at 3787.663 kb on + strand, within MPMX20_03597 at 3787.671 kb on - strand, within MPMX20_03597 at 3787.710 kb on - strand, within MPMX20_03597 at 3787.744 kb on - strand, within MPMX20_03597 at 3787.745 kb on + strand, within MPMX20_03597 at 3787.767 kb on + strand, within MPMX20_03597 at 3787.775 kb on - strand, within MPMX20_03597 at 3787.785 kb on - strand, within MPMX20_03597 at 3787.833 kb on + strand, within MPMX20_03597 at 3787.958 kb on + strand, within MPMX20_03597 at 3788.003 kb on + strand, within MPMX20_03597 at 3788.045 kb on - strand, within MPMX20_03597 at 3788.052 kb on + strand, within MPMX20_03597 at 3788.111 kb on - strand, within MPMX20_03597 at 3788.123 kb on - strand, within MPMX20_03597 at 3788.146 kb on + strand, within MPMX20_03597 at 3788.146 kb on + strand, within MPMX20_03597 at 3788.154 kb on - strand, within MPMX20_03597 at 3788.217 kb on - strand, within MPMX20_03597 at 3788.298 kb on + strand, within MPMX20_03597 at 3788.303 kb on + strand, within MPMX20_03597 at 3788.359 kb on - strand at 3788.359 kb on - strand at 3788.413 kb on + strand at 3788.479 kb on + strand at 3788.480 kb on + strand at 3788.487 kb on + strand at 3788.487 kb on + strand at 3788.495 kb on - strand at 3788.504 kb on - strand at 3788.520 kb on - strand at 3788.520 kb on - strand at 3788.538 kb on + strand at 3788.609 kb on - strand, within MPMX20_03598 at 3788.627 kb on + strand, within MPMX20_03598 at 3788.635 kb on - strand, within MPMX20_03598 at 3788.658 kb on - strand, within MPMX20_03598 at 3788.658 kb on - strand, within MPMX20_03598 at 3788.731 kb on + strand, within MPMX20_03598 at 3788.739 kb on - strand, within MPMX20_03598 at 3788.889 kb on - strand, within MPMX20_03598 at 3788.898 kb on + strand, within MPMX20_03598 at 3788.898 kb on + strand, within MPMX20_03598 at 3788.984 kb on - strand, within MPMX20_03598 at 3788.984 kb on - strand, within MPMX20_03598 at 3789.001 kb on - strand, within MPMX20_03598 at 3789.059 kb on + strand at 3789.125 kb on - strand at 3789.146 kb on - strand at 3789.203 kb on - strand at 3789.255 kb on + strand at 3789.255 kb on + strand at 3789.255 kb on + strand at 3789.255 kb on + strand at 3789.255 kb on + strand at 3789.255 kb on + strand at 3789.255 kb on + strand at 3789.255 kb on + strand at 3789.470 kb on - strand, within MPMX20_03599
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, Mixed culture; Bacillus pumilus TBS_065 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 3,785,362 - -0.2 3,785,373 + -2.9 3,785,416 - MPMX20_03596 0.13 +0.4 3,785,435 - MPMX20_03596 0.14 -0.8 3,785,461 + MPMX20_03596 0.17 -1.3 3,785,488 - MPMX20_03596 0.20 -2.3 3,785,507 - MPMX20_03596 0.22 -0.7 3,785,542 - MPMX20_03596 0.25 -0.8 3,785,605 - MPMX20_03596 0.31 +0.1 3,785,607 + MPMX20_03596 0.31 +0.7 3,785,607 + MPMX20_03596 0.31 +0.8 3,785,607 + MPMX20_03596 0.31 -1.8 3,785,638 + MPMX20_03596 0.34 -0.1 3,785,651 - MPMX20_03596 0.36 -1.4 3,785,772 - MPMX20_03596 0.47 -0.6 3,785,786 + MPMX20_03596 0.49 -0.0 3,785,877 + MPMX20_03596 0.58 -0.4 3,785,900 + MPMX20_03596 0.60 +1.1 3,786,019 + MPMX20_03596 0.72 -0.9 3,786,048 + MPMX20_03596 0.74 -0.6 3,786,056 - MPMX20_03596 0.75 +1.2 3,786,084 - MPMX20_03596 0.78 -1.6 3,786,167 - MPMX20_03596 0.86 +2.4 3,786,195 + MPMX20_03596 0.89 -1.1 3,786,207 + -1.0 3,786,224 + +0.4 3,786,232 - -1.6 3,786,270 + -0.7 3,786,292 + +0.8 3,786,308 - +0.4 3,786,378 + +0.2 3,786,453 - +0.2 3,786,513 - -1.9 3,786,523 + -1.5 3,786,532 - -1.1 3,786,539 - MPMX20_03597 0.10 +2.1 3,786,563 - MPMX20_03597 0.11 +4.4 3,786,580 - MPMX20_03597 0.12 +2.2 3,786,649 - MPMX20_03597 0.15 +0.5 3,786,651 + MPMX20_03597 0.15 +1.1 3,786,659 - MPMX20_03597 0.16 +0.1 3,786,757 - MPMX20_03597 0.20 -0.3 3,786,764 + MPMX20_03597 0.20 +0.1 3,786,765 + MPMX20_03597 0.20 +0.4 3,786,770 + MPMX20_03597 0.21 -0.5 3,786,772 - MPMX20_03597 0.21 -0.2 3,786,778 - MPMX20_03597 0.21 +0.8 3,786,801 + MPMX20_03597 0.22 +0.7 3,786,801 + MPMX20_03597 0.22 -0.8 3,786,809 - MPMX20_03597 0.22 -1.0 3,786,921 - MPMX20_03597 0.27 +0.8 3,786,926 - MPMX20_03597 0.28 +2.0 3,786,964 - MPMX20_03597 0.29 -1.3 3,786,964 - MPMX20_03597 0.29 +1.2 3,786,964 - MPMX20_03597 0.29 -1.4 3,786,964 - MPMX20_03597 0.29 -1.5 3,787,024 - MPMX20_03597 0.32 +0.1 3,787,143 + MPMX20_03597 0.37 +0.7 3,787,175 + MPMX20_03597 0.39 -0.6 3,787,250 + MPMX20_03597 0.42 -0.0 3,787,295 + MPMX20_03597 0.44 -1.7 3,787,302 + MPMX20_03597 0.45 -0.5 3,787,303 - MPMX20_03597 0.45 -0.7 3,787,364 + MPMX20_03597 0.47 +2.6 3,787,401 - MPMX20_03597 0.49 -0.0 3,787,408 + MPMX20_03597 0.49 -2.8 3,787,416 - MPMX20_03597 0.50 -0.7 3,787,427 + MPMX20_03597 0.50 -0.3 3,787,432 + MPMX20_03597 0.50 -0.3 3,787,432 + MPMX20_03597 0.50 +0.3 3,787,440 - MPMX20_03597 0.51 +0.1 3,787,440 - MPMX20_03597 0.51 -1.0 3,787,464 + MPMX20_03597 0.52 +0.2 3,787,470 - MPMX20_03597 0.52 +1.1 3,787,545 + MPMX20_03597 0.56 +0.8 3,787,563 + MPMX20_03597 0.56 +0.3 3,787,581 - MPMX20_03597 0.57 +0.8 3,787,582 - MPMX20_03597 0.57 -1.8 3,787,624 + MPMX20_03597 0.59 +0.3 3,787,638 + MPMX20_03597 0.60 +0.5 3,787,648 + MPMX20_03597 0.60 -1.7 3,787,650 - MPMX20_03597 0.60 -1.2 3,787,656 - MPMX20_03597 0.61 +1.9 3,787,656 - MPMX20_03597 0.61 -1.4 3,787,658 + MPMX20_03597 0.61 +0.7 3,787,658 + MPMX20_03597 0.61 +0.2 3,787,663 + MPMX20_03597 0.61 -1.3 3,787,671 - MPMX20_03597 0.61 -0.5 3,787,710 - MPMX20_03597 0.63 -1.4 3,787,744 - MPMX20_03597 0.64 -0.1 3,787,745 + MPMX20_03597 0.65 +0.1 3,787,767 + MPMX20_03597 0.65 -1.6 3,787,775 - MPMX20_03597 0.66 +0.4 3,787,785 - MPMX20_03597 0.66 +0.4 3,787,833 + MPMX20_03597 0.68 +1.1 3,787,958 + MPMX20_03597 0.74 +3.4 3,788,003 + MPMX20_03597 0.76 +0.8 3,788,045 - MPMX20_03597 0.78 -0.3 3,788,052 + MPMX20_03597 0.78 +1.7 3,788,111 - MPMX20_03597 0.81 +0.1 3,788,123 - MPMX20_03597 0.82 +1.1 3,788,146 + MPMX20_03597 0.83 -1.0 3,788,146 + MPMX20_03597 0.83 -2.3 3,788,154 - MPMX20_03597 0.83 -0.1 3,788,217 - MPMX20_03597 0.86 +1.8 3,788,298 + MPMX20_03597 0.89 +0.6 3,788,303 + MPMX20_03597 0.90 -0.8 3,788,359 - -1.4 3,788,359 - +0.4 3,788,413 + +0.8 3,788,479 + -0.8 3,788,480 + -0.1 3,788,487 + +0.6 3,788,487 + -1.9 3,788,495 - -0.1 3,788,504 - +1.2 3,788,520 - -0.5 3,788,520 - -0.3 3,788,538 + +0.1 3,788,609 - MPMX20_03598 0.12 +0.1 3,788,627 + MPMX20_03598 0.16 -1.8 3,788,635 - MPMX20_03598 0.17 -0.8 3,788,658 - MPMX20_03598 0.21 +2.4 3,788,658 - MPMX20_03598 0.21 -0.9 3,788,731 + MPMX20_03598 0.34 +0.4 3,788,739 - MPMX20_03598 0.35 +0.7 3,788,889 - MPMX20_03598 0.62 -1.7 3,788,898 + MPMX20_03598 0.64 +0.7 3,788,898 + MPMX20_03598 0.64 +0.4 3,788,984 - MPMX20_03598 0.79 +1.4 3,788,984 - MPMX20_03598 0.79 -0.2 3,789,001 - MPMX20_03598 0.82 -0.4 3,789,059 + +0.3 3,789,125 - -0.9 3,789,146 - +0.4 3,789,203 - -1.2 3,789,255 + +0.1 3,789,255 + -0.4 3,789,255 + -0.2 3,789,255 + +0.5 3,789,255 + +0.1 3,789,255 + -2.4 3,789,255 + +0.1 3,789,255 + -0.8 3,789,470 - MPMX20_03599 0.25 +0.1
Or see this region's nucleotide sequence