Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03597

Experiment: M9 plate, Mixed culture; Bacillus pumilus TBS_065 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03596 and MPMX20_03597 are separated by 1 nucleotidesMPMX20_03597 and MPMX20_03598 are separated by 6 nucleotidesMPMX20_03598 and MPMX20_03599 are separated by 119 nucleotides MPMX20_03596: MPMX20_03596 - High-affinity nickel transport protein, at 3,785,287 to 3,786,309 _03596 MPMX20_03597: MPMX20_03597 - Carbamoyltransferase HypF, at 3,786,311 to 3,788,533 _03597 MPMX20_03598: MPMX20_03598 - Iron-sulfur protein, at 3,788,540 to 3,789,100 _03598 MPMX20_03599: MPMX20_03599 - HTH-type transcriptional regulator AscG, at 3,789,220 to 3,790,233 _03599 Position (kb) 3786 3787 3788 3789Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3785.362 kb on - strandat 3785.373 kb on + strandat 3785.416 kb on - strand, within MPMX20_03596at 3785.435 kb on - strand, within MPMX20_03596at 3785.461 kb on + strand, within MPMX20_03596at 3785.488 kb on - strand, within MPMX20_03596at 3785.507 kb on - strand, within MPMX20_03596at 3785.542 kb on - strand, within MPMX20_03596at 3785.605 kb on - strand, within MPMX20_03596at 3785.607 kb on + strand, within MPMX20_03596at 3785.607 kb on + strand, within MPMX20_03596at 3785.607 kb on + strand, within MPMX20_03596at 3785.638 kb on + strand, within MPMX20_03596at 3785.651 kb on - strand, within MPMX20_03596at 3785.772 kb on - strand, within MPMX20_03596at 3785.786 kb on + strand, within MPMX20_03596at 3785.877 kb on + strand, within MPMX20_03596at 3785.900 kb on + strand, within MPMX20_03596at 3786.019 kb on + strand, within MPMX20_03596at 3786.048 kb on + strand, within MPMX20_03596at 3786.056 kb on - strand, within MPMX20_03596at 3786.084 kb on - strand, within MPMX20_03596at 3786.167 kb on - strand, within MPMX20_03596at 3786.195 kb on + strand, within MPMX20_03596at 3786.207 kb on + strandat 3786.224 kb on + strandat 3786.232 kb on - strandat 3786.270 kb on + strandat 3786.292 kb on + strandat 3786.308 kb on - strandat 3786.378 kb on + strandat 3786.453 kb on - strandat 3786.513 kb on - strandat 3786.523 kb on + strandat 3786.532 kb on - strandat 3786.539 kb on - strand, within MPMX20_03597at 3786.563 kb on - strand, within MPMX20_03597at 3786.580 kb on - strand, within MPMX20_03597at 3786.649 kb on - strand, within MPMX20_03597at 3786.651 kb on + strand, within MPMX20_03597at 3786.659 kb on - strand, within MPMX20_03597at 3786.757 kb on - strand, within MPMX20_03597at 3786.764 kb on + strand, within MPMX20_03597at 3786.765 kb on + strand, within MPMX20_03597at 3786.770 kb on + strand, within MPMX20_03597at 3786.772 kb on - strand, within MPMX20_03597at 3786.778 kb on - strand, within MPMX20_03597at 3786.801 kb on + strand, within MPMX20_03597at 3786.801 kb on + strand, within MPMX20_03597at 3786.809 kb on - strand, within MPMX20_03597at 3786.921 kb on - strand, within MPMX20_03597at 3786.926 kb on - strand, within MPMX20_03597at 3786.964 kb on - strand, within MPMX20_03597at 3786.964 kb on - strand, within MPMX20_03597at 3786.964 kb on - strand, within MPMX20_03597at 3786.964 kb on - strand, within MPMX20_03597at 3787.024 kb on - strand, within MPMX20_03597at 3787.143 kb on + strand, within MPMX20_03597at 3787.175 kb on + strand, within MPMX20_03597at 3787.250 kb on + strand, within MPMX20_03597at 3787.295 kb on + strand, within MPMX20_03597at 3787.302 kb on + strand, within MPMX20_03597at 3787.303 kb on - strand, within MPMX20_03597at 3787.364 kb on + strand, within MPMX20_03597at 3787.401 kb on - strand, within MPMX20_03597at 3787.408 kb on + strand, within MPMX20_03597at 3787.416 kb on - strand, within MPMX20_03597at 3787.427 kb on + strand, within MPMX20_03597at 3787.432 kb on + strand, within MPMX20_03597at 3787.432 kb on + strand, within MPMX20_03597at 3787.440 kb on - strand, within MPMX20_03597at 3787.440 kb on - strand, within MPMX20_03597at 3787.464 kb on + strand, within MPMX20_03597at 3787.470 kb on - strand, within MPMX20_03597at 3787.545 kb on + strand, within MPMX20_03597at 3787.563 kb on + strand, within MPMX20_03597at 3787.581 kb on - strand, within MPMX20_03597at 3787.582 kb on - strand, within MPMX20_03597at 3787.624 kb on + strand, within MPMX20_03597at 3787.638 kb on + strand, within MPMX20_03597at 3787.648 kb on + strand, within MPMX20_03597at 3787.650 kb on - strand, within MPMX20_03597at 3787.656 kb on - strand, within MPMX20_03597at 3787.656 kb on - strand, within MPMX20_03597at 3787.658 kb on + strand, within MPMX20_03597at 3787.658 kb on + strand, within MPMX20_03597at 3787.663 kb on + strand, within MPMX20_03597at 3787.671 kb on - strand, within MPMX20_03597at 3787.710 kb on - strand, within MPMX20_03597at 3787.744 kb on - strand, within MPMX20_03597at 3787.745 kb on + strand, within MPMX20_03597at 3787.767 kb on + strand, within MPMX20_03597at 3787.775 kb on - strand, within MPMX20_03597at 3787.785 kb on - strand, within MPMX20_03597at 3787.833 kb on + strand, within MPMX20_03597at 3787.958 kb on + strand, within MPMX20_03597at 3788.003 kb on + strand, within MPMX20_03597at 3788.045 kb on - strand, within MPMX20_03597at 3788.052 kb on + strand, within MPMX20_03597at 3788.111 kb on - strand, within MPMX20_03597at 3788.123 kb on - strand, within MPMX20_03597at 3788.146 kb on + strand, within MPMX20_03597at 3788.146 kb on + strand, within MPMX20_03597at 3788.154 kb on - strand, within MPMX20_03597at 3788.217 kb on - strand, within MPMX20_03597at 3788.298 kb on + strand, within MPMX20_03597at 3788.303 kb on + strand, within MPMX20_03597at 3788.359 kb on - strandat 3788.359 kb on - strandat 3788.413 kb on + strandat 3788.479 kb on + strandat 3788.480 kb on + strandat 3788.487 kb on + strandat 3788.487 kb on + strandat 3788.495 kb on - strandat 3788.504 kb on - strandat 3788.520 kb on - strandat 3788.520 kb on - strandat 3788.538 kb on + strandat 3788.609 kb on - strand, within MPMX20_03598at 3788.627 kb on + strand, within MPMX20_03598at 3788.635 kb on - strand, within MPMX20_03598at 3788.658 kb on - strand, within MPMX20_03598at 3788.658 kb on - strand, within MPMX20_03598at 3788.731 kb on + strand, within MPMX20_03598at 3788.739 kb on - strand, within MPMX20_03598at 3788.889 kb on - strand, within MPMX20_03598at 3788.898 kb on + strand, within MPMX20_03598at 3788.898 kb on + strand, within MPMX20_03598at 3788.984 kb on - strand, within MPMX20_03598at 3788.984 kb on - strand, within MPMX20_03598at 3789.001 kb on - strand, within MPMX20_03598at 3789.059 kb on + strandat 3789.125 kb on - strandat 3789.146 kb on - strandat 3789.203 kb on - strandat 3789.255 kb on + strandat 3789.255 kb on + strandat 3789.255 kb on + strandat 3789.255 kb on + strandat 3789.255 kb on + strandat 3789.255 kb on + strandat 3789.255 kb on + strandat 3789.255 kb on + strandat 3789.470 kb on - strand, within MPMX20_03599

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, Mixed culture; Bacillus pumilus TBS_065 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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3,785,362 - -0.2
3,785,373 + -2.9
3,785,416 - MPMX20_03596 0.13 +0.4
3,785,435 - MPMX20_03596 0.14 -0.8
3,785,461 + MPMX20_03596 0.17 -1.3
3,785,488 - MPMX20_03596 0.20 -2.3
3,785,507 - MPMX20_03596 0.22 -0.7
3,785,542 - MPMX20_03596 0.25 -0.8
3,785,605 - MPMX20_03596 0.31 +0.1
3,785,607 + MPMX20_03596 0.31 +0.7
3,785,607 + MPMX20_03596 0.31 +0.8
3,785,607 + MPMX20_03596 0.31 -1.8
3,785,638 + MPMX20_03596 0.34 -0.1
3,785,651 - MPMX20_03596 0.36 -1.4
3,785,772 - MPMX20_03596 0.47 -0.6
3,785,786 + MPMX20_03596 0.49 -0.0
3,785,877 + MPMX20_03596 0.58 -0.4
3,785,900 + MPMX20_03596 0.60 +1.1
3,786,019 + MPMX20_03596 0.72 -0.9
3,786,048 + MPMX20_03596 0.74 -0.6
3,786,056 - MPMX20_03596 0.75 +1.2
3,786,084 - MPMX20_03596 0.78 -1.6
3,786,167 - MPMX20_03596 0.86 +2.4
3,786,195 + MPMX20_03596 0.89 -1.1
3,786,207 + -1.0
3,786,224 + +0.4
3,786,232 - -1.6
3,786,270 + -0.7
3,786,292 + +0.8
3,786,308 - +0.4
3,786,378 + +0.2
3,786,453 - +0.2
3,786,513 - -1.9
3,786,523 + -1.5
3,786,532 - -1.1
3,786,539 - MPMX20_03597 0.10 +2.1
3,786,563 - MPMX20_03597 0.11 +4.4
3,786,580 - MPMX20_03597 0.12 +2.2
3,786,649 - MPMX20_03597 0.15 +0.5
3,786,651 + MPMX20_03597 0.15 +1.1
3,786,659 - MPMX20_03597 0.16 +0.1
3,786,757 - MPMX20_03597 0.20 -0.3
3,786,764 + MPMX20_03597 0.20 +0.1
3,786,765 + MPMX20_03597 0.20 +0.4
3,786,770 + MPMX20_03597 0.21 -0.5
3,786,772 - MPMX20_03597 0.21 -0.2
3,786,778 - MPMX20_03597 0.21 +0.8
3,786,801 + MPMX20_03597 0.22 +0.7
3,786,801 + MPMX20_03597 0.22 -0.8
3,786,809 - MPMX20_03597 0.22 -1.0
3,786,921 - MPMX20_03597 0.27 +0.8
3,786,926 - MPMX20_03597 0.28 +2.0
3,786,964 - MPMX20_03597 0.29 -1.3
3,786,964 - MPMX20_03597 0.29 +1.2
3,786,964 - MPMX20_03597 0.29 -1.4
3,786,964 - MPMX20_03597 0.29 -1.5
3,787,024 - MPMX20_03597 0.32 +0.1
3,787,143 + MPMX20_03597 0.37 +0.7
3,787,175 + MPMX20_03597 0.39 -0.6
3,787,250 + MPMX20_03597 0.42 -0.0
3,787,295 + MPMX20_03597 0.44 -1.7
3,787,302 + MPMX20_03597 0.45 -0.5
3,787,303 - MPMX20_03597 0.45 -0.7
3,787,364 + MPMX20_03597 0.47 +2.6
3,787,401 - MPMX20_03597 0.49 -0.0
3,787,408 + MPMX20_03597 0.49 -2.8
3,787,416 - MPMX20_03597 0.50 -0.7
3,787,427 + MPMX20_03597 0.50 -0.3
3,787,432 + MPMX20_03597 0.50 -0.3
3,787,432 + MPMX20_03597 0.50 +0.3
3,787,440 - MPMX20_03597 0.51 +0.1
3,787,440 - MPMX20_03597 0.51 -1.0
3,787,464 + MPMX20_03597 0.52 +0.2
3,787,470 - MPMX20_03597 0.52 +1.1
3,787,545 + MPMX20_03597 0.56 +0.8
3,787,563 + MPMX20_03597 0.56 +0.3
3,787,581 - MPMX20_03597 0.57 +0.8
3,787,582 - MPMX20_03597 0.57 -1.8
3,787,624 + MPMX20_03597 0.59 +0.3
3,787,638 + MPMX20_03597 0.60 +0.5
3,787,648 + MPMX20_03597 0.60 -1.7
3,787,650 - MPMX20_03597 0.60 -1.2
3,787,656 - MPMX20_03597 0.61 +1.9
3,787,656 - MPMX20_03597 0.61 -1.4
3,787,658 + MPMX20_03597 0.61 +0.7
3,787,658 + MPMX20_03597 0.61 +0.2
3,787,663 + MPMX20_03597 0.61 -1.3
3,787,671 - MPMX20_03597 0.61 -0.5
3,787,710 - MPMX20_03597 0.63 -1.4
3,787,744 - MPMX20_03597 0.64 -0.1
3,787,745 + MPMX20_03597 0.65 +0.1
3,787,767 + MPMX20_03597 0.65 -1.6
3,787,775 - MPMX20_03597 0.66 +0.4
3,787,785 - MPMX20_03597 0.66 +0.4
3,787,833 + MPMX20_03597 0.68 +1.1
3,787,958 + MPMX20_03597 0.74 +3.4
3,788,003 + MPMX20_03597 0.76 +0.8
3,788,045 - MPMX20_03597 0.78 -0.3
3,788,052 + MPMX20_03597 0.78 +1.7
3,788,111 - MPMX20_03597 0.81 +0.1
3,788,123 - MPMX20_03597 0.82 +1.1
3,788,146 + MPMX20_03597 0.83 -1.0
3,788,146 + MPMX20_03597 0.83 -2.3
3,788,154 - MPMX20_03597 0.83 -0.1
3,788,217 - MPMX20_03597 0.86 +1.8
3,788,298 + MPMX20_03597 0.89 +0.6
3,788,303 + MPMX20_03597 0.90 -0.8
3,788,359 - -1.4
3,788,359 - +0.4
3,788,413 + +0.8
3,788,479 + -0.8
3,788,480 + -0.1
3,788,487 + +0.6
3,788,487 + -1.9
3,788,495 - -0.1
3,788,504 - +1.2
3,788,520 - -0.5
3,788,520 - -0.3
3,788,538 + +0.1
3,788,609 - MPMX20_03598 0.12 +0.1
3,788,627 + MPMX20_03598 0.16 -1.8
3,788,635 - MPMX20_03598 0.17 -0.8
3,788,658 - MPMX20_03598 0.21 +2.4
3,788,658 - MPMX20_03598 0.21 -0.9
3,788,731 + MPMX20_03598 0.34 +0.4
3,788,739 - MPMX20_03598 0.35 +0.7
3,788,889 - MPMX20_03598 0.62 -1.7
3,788,898 + MPMX20_03598 0.64 +0.7
3,788,898 + MPMX20_03598 0.64 +0.4
3,788,984 - MPMX20_03598 0.79 +1.4
3,788,984 - MPMX20_03598 0.79 -0.2
3,789,001 - MPMX20_03598 0.82 -0.4
3,789,059 + +0.3
3,789,125 - -0.9
3,789,146 - +0.4
3,789,203 - -1.2
3,789,255 + +0.1
3,789,255 + -0.4
3,789,255 + -0.2
3,789,255 + +0.5
3,789,255 + +0.1
3,789,255 + -2.4
3,789,255 + +0.1
3,789,255 + -0.8
3,789,470 - MPMX20_03599 0.25 +0.1

Or see this region's nucleotide sequence