Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00218

Experiment: M9 plate, Mixed culture; Bacillus pumilus TBS_065 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00217 and MPMX20_00218 are separated by 286 nucleotidesMPMX20_00218 and MPMX20_00219 are separated by 95 nucleotidesMPMX20_00219 and MPMX20_00220 are separated by 38 nucleotides MPMX20_00217: MPMX20_00217 - Phosphomethylpyrimidine synthase, at 225,671 to 227,566 _00217 MPMX20_00218: MPMX20_00218 - Regulator of sigma D, at 227,853 to 228,350 _00218 MPMX20_00219: MPMX20_00219 - NADH pyrophosphatase, at 228,446 to 229,219 _00219 MPMX20_00220: MPMX20_00220 - Uroporphyrinogen decarboxylase, at 229,258 to 230,322 _00220 Position (kb) 227 228 229Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 226.860 kb on + strand, within MPMX20_00217at 226.903 kb on - strand, within MPMX20_00217at 226.993 kb on + strand, within MPMX20_00217at 227.021 kb on + strand, within MPMX20_00217at 227.051 kb on + strand, within MPMX20_00217at 227.130 kb on - strand, within MPMX20_00217at 227.130 kb on - strand, within MPMX20_00217at 227.190 kb on - strand, within MPMX20_00217at 227.213 kb on + strand, within MPMX20_00217at 227.322 kb on - strand, within MPMX20_00217at 227.332 kb on + strand, within MPMX20_00217at 227.340 kb on - strand, within MPMX20_00217at 227.340 kb on - strand, within MPMX20_00217at 227.342 kb on + strand, within MPMX20_00217at 227.350 kb on - strand, within MPMX20_00217at 227.416 kb on + strandat 227.497 kb on + strandat 227.505 kb on - strandat 227.505 kb on - strandat 227.536 kb on + strandat 227.544 kb on - strandat 227.561 kb on + strandat 227.571 kb on - strandat 227.589 kb on - strandat 227.647 kb on - strandat 227.678 kb on + strandat 227.681 kb on - strandat 227.681 kb on - strandat 227.683 kb on + strandat 227.712 kb on + strandat 227.712 kb on + strandat 227.725 kb on + strandat 227.811 kb on - strandat 227.814 kb on + strandat 227.814 kb on - strandat 227.862 kb on - strandat 227.928 kb on - strand, within MPMX20_00218at 227.970 kb on - strand, within MPMX20_00218at 227.970 kb on - strand, within MPMX20_00218at 227.989 kb on + strand, within MPMX20_00218at 227.992 kb on - strand, within MPMX20_00218at 227.997 kb on + strand, within MPMX20_00218at 228.058 kb on + strand, within MPMX20_00218at 228.070 kb on + strand, within MPMX20_00218at 228.098 kb on + strand, within MPMX20_00218at 228.098 kb on + strand, within MPMX20_00218at 228.167 kb on - strand, within MPMX20_00218at 228.174 kb on - strand, within MPMX20_00218at 228.230 kb on + strand, within MPMX20_00218at 228.230 kb on + strand, within MPMX20_00218at 228.230 kb on + strand, within MPMX20_00218at 228.230 kb on + strand, within MPMX20_00218at 228.230 kb on + strand, within MPMX20_00218at 228.230 kb on + strand, within MPMX20_00218at 228.230 kb on + strand, within MPMX20_00218at 228.238 kb on - strand, within MPMX20_00218at 228.238 kb on - strand, within MPMX20_00218at 228.238 kb on - strand, within MPMX20_00218at 228.238 kb on - strand, within MPMX20_00218at 228.238 kb on - strand, within MPMX20_00218at 228.238 kb on - strand, within MPMX20_00218at 228.238 kb on - strand, within MPMX20_00218at 228.238 kb on - strand, within MPMX20_00218at 228.238 kb on - strand, within MPMX20_00218at 228.238 kb on - strand, within MPMX20_00218at 228.238 kb on - strand, within MPMX20_00218at 228.238 kb on - strand, within MPMX20_00218at 228.238 kb on - strand, within MPMX20_00218at 228.238 kb on - strand, within MPMX20_00218at 228.238 kb on - strand, within MPMX20_00218at 228.238 kb on - strand, within MPMX20_00218at 228.238 kb on - strand, within MPMX20_00218at 228.238 kb on - strand, within MPMX20_00218at 228.238 kb on - strand, within MPMX20_00218at 228.262 kb on + strand, within MPMX20_00218at 228.269 kb on - strand, within MPMX20_00218at 228.270 kb on - strand, within MPMX20_00218at 228.270 kb on - strand, within MPMX20_00218at 228.273 kb on + strand, within MPMX20_00218at 228.278 kb on + strand, within MPMX20_00218at 228.278 kb on + strand, within MPMX20_00218at 228.278 kb on + strand, within MPMX20_00218at 228.286 kb on - strand, within MPMX20_00218at 228.286 kb on - strand, within MPMX20_00218at 228.286 kb on - strand, within MPMX20_00218at 228.286 kb on - strand, within MPMX20_00218at 228.286 kb on - strand, within MPMX20_00218at 228.310 kb on + strandat 228.341 kb on + strandat 228.341 kb on + strandat 228.349 kb on + strandat 228.366 kb on + strandat 228.366 kb on + strandat 228.366 kb on + strandat 228.366 kb on + strandat 228.366 kb on + strandat 228.374 kb on - strandat 228.374 kb on - strandat 228.394 kb on - strandat 228.406 kb on + strandat 228.406 kb on + strandat 228.417 kb on - strandat 228.425 kb on + strandat 228.433 kb on - strandat 228.433 kb on - strandat 228.433 kb on - strandat 228.435 kb on + strandat 228.470 kb on + strandat 228.531 kb on + strand, within MPMX20_00219at 228.532 kb on + strand, within MPMX20_00219at 228.538 kb on - strand, within MPMX20_00219at 228.538 kb on - strand, within MPMX20_00219at 228.538 kb on - strand, within MPMX20_00219at 228.605 kb on + strand, within MPMX20_00219at 228.671 kb on - strand, within MPMX20_00219at 228.699 kb on + strand, within MPMX20_00219at 228.707 kb on - strand, within MPMX20_00219at 228.756 kb on + strand, within MPMX20_00219at 228.758 kb on - strand, within MPMX20_00219at 228.764 kb on - strand, within MPMX20_00219at 228.766 kb on + strand, within MPMX20_00219at 228.774 kb on - strand, within MPMX20_00219at 228.788 kb on - strand, within MPMX20_00219at 228.790 kb on - strand, within MPMX20_00219at 228.946 kb on + strand, within MPMX20_00219at 228.968 kb on - strand, within MPMX20_00219at 228.977 kb on - strand, within MPMX20_00219at 228.992 kb on - strand, within MPMX20_00219at 229.003 kb on + strand, within MPMX20_00219at 229.014 kb on + strand, within MPMX20_00219at 229.014 kb on + strand, within MPMX20_00219at 229.022 kb on - strand, within MPMX20_00219at 229.198 kb on + strandat 229.209 kb on + strandat 229.210 kb on + strandat 229.219 kb on + strandat 229.219 kb on + strandat 229.227 kb on - strandat 229.227 kb on - strandat 229.227 kb on - strandat 229.227 kb on - strandat 229.227 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, Mixed culture; Bacillus pumilus TBS_065 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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226,860 + MPMX20_00217 0.63 +0.6
226,903 - MPMX20_00217 0.65 +0.2
226,993 + MPMX20_00217 0.70 +1.1
227,021 + MPMX20_00217 0.71 +0.9
227,051 + MPMX20_00217 0.73 -0.5
227,130 - MPMX20_00217 0.77 -1.3
227,130 - MPMX20_00217 0.77 -1.1
227,190 - MPMX20_00217 0.80 +0.2
227,213 + MPMX20_00217 0.81 -1.0
227,322 - MPMX20_00217 0.87 +0.9
227,332 + MPMX20_00217 0.88 +0.9
227,340 - MPMX20_00217 0.88 -0.8
227,340 - MPMX20_00217 0.88 -1.4
227,342 + MPMX20_00217 0.88 -1.5
227,350 - MPMX20_00217 0.89 +2.5
227,416 + -1.3
227,497 + +0.7
227,505 - -0.5
227,505 - +0.2
227,536 + -0.6
227,544 - -1.1
227,561 + -0.5
227,571 - +1.1
227,589 - -1.6
227,647 - -1.2
227,678 + +0.9
227,681 - -0.8
227,681 - -0.2
227,683 + +0.5
227,712 + +0.7
227,712 + -0.6
227,725 + -2.3
227,811 - +0.4
227,814 + +0.5
227,814 - -0.1
227,862 - +0.9
227,928 - MPMX20_00218 0.15 -1.3
227,970 - MPMX20_00218 0.23 -0.1
227,970 - MPMX20_00218 0.23 -0.7
227,989 + MPMX20_00218 0.27 +0.9
227,992 - MPMX20_00218 0.28 -0.7
227,997 + MPMX20_00218 0.29 +1.1
228,058 + MPMX20_00218 0.41 -0.1
228,070 + MPMX20_00218 0.44 +3.5
228,098 + MPMX20_00218 0.49 -0.6
228,098 + MPMX20_00218 0.49 +0.5
228,167 - MPMX20_00218 0.63 +0.2
228,174 - MPMX20_00218 0.64 -1.0
228,230 + MPMX20_00218 0.76 +0.4
228,230 + MPMX20_00218 0.76 -0.3
228,230 + MPMX20_00218 0.76 -0.7
228,230 + MPMX20_00218 0.76 -0.1
228,230 + MPMX20_00218 0.76 +1.5
228,230 + MPMX20_00218 0.76 -1.6
228,230 + MPMX20_00218 0.76 +1.5
228,238 - MPMX20_00218 0.77 +1.9
228,238 - MPMX20_00218 0.77 +0.3
228,238 - MPMX20_00218 0.77 -1.3
228,238 - MPMX20_00218 0.77 -0.8
228,238 - MPMX20_00218 0.77 -1.6
228,238 - MPMX20_00218 0.77 -0.1
228,238 - MPMX20_00218 0.77 +0.5
228,238 - MPMX20_00218 0.77 -1.0
228,238 - MPMX20_00218 0.77 -1.1
228,238 - MPMX20_00218 0.77 +1.1
228,238 - MPMX20_00218 0.77 -2.9
228,238 - MPMX20_00218 0.77 -0.9
228,238 - MPMX20_00218 0.77 -0.6
228,238 - MPMX20_00218 0.77 +0.1
228,238 - MPMX20_00218 0.77 +0.6
228,238 - MPMX20_00218 0.77 -1.2
228,238 - MPMX20_00218 0.77 -0.7
228,238 - MPMX20_00218 0.77 +0.5
228,238 - MPMX20_00218 0.77 -1.2
228,262 + MPMX20_00218 0.82 -0.2
228,269 - MPMX20_00218 0.84 -0.8
228,270 - MPMX20_00218 0.84 -0.5
228,270 - MPMX20_00218 0.84 +0.7
228,273 + MPMX20_00218 0.84 -2.0
228,278 + MPMX20_00218 0.85 -0.5
228,278 + MPMX20_00218 0.85 +0.5
228,278 + MPMX20_00218 0.85 +0.5
228,286 - MPMX20_00218 0.87 -0.7
228,286 - MPMX20_00218 0.87 +0.6
228,286 - MPMX20_00218 0.87 -1.3
228,286 - MPMX20_00218 0.87 -0.6
228,286 - MPMX20_00218 0.87 +0.2
228,310 + +0.2
228,341 + -0.4
228,341 + +0.6
228,349 + +0.9
228,366 + +0.6
228,366 + -0.1
228,366 + -0.6
228,366 + -0.1
228,366 + -0.4
228,374 - -1.2
228,374 - +0.2
228,394 - +3.1
228,406 + +2.1
228,406 + -0.1
228,417 - -1.3
228,425 + -1.0
228,433 - +0.6
228,433 - +1.5
228,433 - -1.0
228,435 + -1.3
228,470 + +0.6
228,531 + MPMX20_00219 0.11 -0.1
228,532 + MPMX20_00219 0.11 +0.9
228,538 - MPMX20_00219 0.12 +1.5
228,538 - MPMX20_00219 0.12 -0.6
228,538 - MPMX20_00219 0.12 +0.3
228,605 + MPMX20_00219 0.21 +0.7
228,671 - MPMX20_00219 0.29 +0.2
228,699 + MPMX20_00219 0.33 -1.6
228,707 - MPMX20_00219 0.34 +0.9
228,756 + MPMX20_00219 0.40 -2.3
228,758 - MPMX20_00219 0.40 -1.5
228,764 - MPMX20_00219 0.41 +1.5
228,766 + MPMX20_00219 0.41 +0.5
228,774 - MPMX20_00219 0.42 +0.8
228,788 - MPMX20_00219 0.44 -0.1
228,790 - MPMX20_00219 0.44 -0.3
228,946 + MPMX20_00219 0.65 -0.8
228,968 - MPMX20_00219 0.67 +0.5
228,977 - MPMX20_00219 0.69 -0.1
228,992 - MPMX20_00219 0.71 -3.1
229,003 + MPMX20_00219 0.72 +0.4
229,014 + MPMX20_00219 0.73 -0.5
229,014 + MPMX20_00219 0.73 +1.2
229,022 - MPMX20_00219 0.74 -1.6
229,198 + -1.5
229,209 + +1.5
229,210 + -0.2
229,219 + +0.9
229,219 + +0.2
229,227 - -0.8
229,227 - -0.9
229,227 - -1.3
229,227 - -0.7
229,227 - +0.7

Or see this region's nucleotide sequence