Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04143

Experiment: TSB plate, Mixed culture; Bacillus subtilis TBS_102 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04141 and MPMX20_04142 are separated by 377 nucleotidesMPMX20_04142 and MPMX20_04143 are separated by 110 nucleotidesMPMX20_04143 and MPMX20_04144 are separated by 67 nucleotidesMPMX20_04144 and MPMX20_04145 are separated by 45 nucleotides MPMX20_04141: MPMX20_04141 - Arginine repressor, at 4,341,797 to 4,342,267 _04141 MPMX20_04142: MPMX20_04142 - Multiple stress resistance protein BhsA, at 4,342,645 to 4,342,908 _04142 MPMX20_04143: MPMX20_04143 - hypothetical protein, at 4,343,019 to 4,343,285 _04143 MPMX20_04144: MPMX20_04144 - putative protein YhcO, at 4,343,353 to 4,343,625 _04144 MPMX20_04145: MPMX20_04145 - Glutarate-semialdehyde dehydrogenase, at 4,343,671 to 4,345,125 _04145 Position (kb) 4343 4344Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 4342.029 kb on + strand, within MPMX20_04141at 4342.029 kb on + strand, within MPMX20_04141at 4342.082 kb on + strand, within MPMX20_04141at 4342.090 kb on - strand, within MPMX20_04141at 4342.107 kb on + strand, within MPMX20_04141at 4342.141 kb on + strand, within MPMX20_04141at 4342.141 kb on + strand, within MPMX20_04141at 4342.147 kb on + strand, within MPMX20_04141at 4342.147 kb on + strand, within MPMX20_04141at 4342.147 kb on + strand, within MPMX20_04141at 4342.147 kb on + strand, within MPMX20_04141at 4342.155 kb on - strand, within MPMX20_04141at 4342.155 kb on - strand, within MPMX20_04141at 4342.246 kb on - strandat 4342.264 kb on + strandat 4342.308 kb on - strandat 4342.327 kb on + strandat 4342.335 kb on - strandat 4342.335 kb on - strandat 4342.335 kb on - strandat 4342.335 kb on - strandat 4342.466 kb on - strandat 4342.642 kb on - strandat 4342.690 kb on - strand, within MPMX20_04142at 4342.746 kb on - strand, within MPMX20_04142at 4342.777 kb on + strand, within MPMX20_04142at 4342.827 kb on + strand, within MPMX20_04142at 4342.835 kb on - strand, within MPMX20_04142at 4342.836 kb on - strand, within MPMX20_04142at 4342.863 kb on + strand, within MPMX20_04142at 4342.863 kb on - strand, within MPMX20_04142at 4342.871 kb on - strand, within MPMX20_04142at 4342.875 kb on + strand, within MPMX20_04142at 4342.875 kb on + strand, within MPMX20_04142at 4342.878 kb on - strand, within MPMX20_04142at 4342.878 kb on - strand, within MPMX20_04142at 4342.897 kb on - strandat 4342.899 kb on - strandat 4342.941 kb on - strandat 4342.969 kb on + strandat 4342.969 kb on + strandat 4343.083 kb on + strand, within MPMX20_04143at 4343.174 kb on - strand, within MPMX20_04143at 4343.192 kb on + strand, within MPMX20_04143at 4343.230 kb on + strand, within MPMX20_04143at 4343.240 kb on + strand, within MPMX20_04143at 4343.248 kb on - strand, within MPMX20_04143at 4343.252 kb on + strand, within MPMX20_04143at 4343.255 kb on - strand, within MPMX20_04143at 4343.259 kb on - strandat 4343.279 kb on - strandat 4343.315 kb on + strandat 4343.323 kb on - strandat 4343.634 kb on + strandat 4343.639 kb on + strandat 4343.639 kb on + strandat 4343.647 kb on - strandat 4343.647 kb on - strandat 4343.647 kb on - strandat 4343.647 kb on - strandat 4343.647 kb on - strandat 4343.783 kb on + strandat 4343.786 kb on - strandat 4343.877 kb on - strand, within MPMX20_04145at 4343.918 kb on - strand, within MPMX20_04145at 4343.942 kb on - strand, within MPMX20_04145at 4343.952 kb on - strand, within MPMX20_04145at 4343.963 kb on - strand, within MPMX20_04145at 4344.045 kb on - strand, within MPMX20_04145at 4344.084 kb on - strand, within MPMX20_04145at 4344.105 kb on + strand, within MPMX20_04145at 4344.161 kb on - strand, within MPMX20_04145at 4344.164 kb on + strand, within MPMX20_04145at 4344.172 kb on - strand, within MPMX20_04145at 4344.238 kb on + strand, within MPMX20_04145at 4344.249 kb on + strand, within MPMX20_04145at 4344.259 kb on + strand, within MPMX20_04145

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, Mixed culture; Bacillus subtilis TBS_102 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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4,342,029 + MPMX20_04141 0.49 -0.6
4,342,029 + MPMX20_04141 0.49 +0.2
4,342,082 + MPMX20_04141 0.61 +0.6
4,342,090 - MPMX20_04141 0.62 -1.3
4,342,107 + MPMX20_04141 0.66 +0.6
4,342,141 + MPMX20_04141 0.73 +0.2
4,342,141 + MPMX20_04141 0.73 +0.4
4,342,147 + MPMX20_04141 0.74 +0.6
4,342,147 + MPMX20_04141 0.74 -1.7
4,342,147 + MPMX20_04141 0.74 -0.3
4,342,147 + MPMX20_04141 0.74 -0.2
4,342,155 - MPMX20_04141 0.76 -2.0
4,342,155 - MPMX20_04141 0.76 +1.2
4,342,246 - -0.6
4,342,264 + +0.1
4,342,308 - -2.0
4,342,327 + +0.4
4,342,335 - +0.6
4,342,335 - +0.8
4,342,335 - -1.0
4,342,335 - +0.3
4,342,466 - +0.6
4,342,642 - +1.2
4,342,690 - MPMX20_04142 0.17 -0.7
4,342,746 - MPMX20_04142 0.38 -1.7
4,342,777 + MPMX20_04142 0.50 +0.1
4,342,827 + MPMX20_04142 0.69 -0.5
4,342,835 - MPMX20_04142 0.72 +1.0
4,342,836 - MPMX20_04142 0.72 +1.9
4,342,863 + MPMX20_04142 0.83 -0.3
4,342,863 - MPMX20_04142 0.83 -0.7
4,342,871 - MPMX20_04142 0.86 +0.1
4,342,875 + MPMX20_04142 0.87 -1.5
4,342,875 + MPMX20_04142 0.87 +0.2
4,342,878 - MPMX20_04142 0.88 -0.4
4,342,878 - MPMX20_04142 0.88 -0.5
4,342,897 - -0.4
4,342,899 - +1.2
4,342,941 - -1.6
4,342,969 + +0.6
4,342,969 + -0.7
4,343,083 + MPMX20_04143 0.24 -1.3
4,343,174 - MPMX20_04143 0.58 -1.1
4,343,192 + MPMX20_04143 0.65 +0.7
4,343,230 + MPMX20_04143 0.79 -0.0
4,343,240 + MPMX20_04143 0.83 +6.3
4,343,248 - MPMX20_04143 0.86 +2.6
4,343,252 + MPMX20_04143 0.87 -0.6
4,343,255 - MPMX20_04143 0.88 -2.6
4,343,259 - -2.8
4,343,279 - -0.6
4,343,315 + -1.7
4,343,323 - +1.8
4,343,634 + -0.3
4,343,639 + -0.1
4,343,639 + -0.4
4,343,647 - -0.3
4,343,647 - -0.2
4,343,647 - -0.0
4,343,647 - +2.0
4,343,647 - +0.6
4,343,783 + -1.5
4,343,786 - +0.8
4,343,877 - MPMX20_04145 0.14 +3.2
4,343,918 - MPMX20_04145 0.17 +0.3
4,343,942 - MPMX20_04145 0.19 +0.6
4,343,952 - MPMX20_04145 0.19 +1.0
4,343,963 - MPMX20_04145 0.20 -0.4
4,344,045 - MPMX20_04145 0.26 -0.1
4,344,084 - MPMX20_04145 0.28 -1.6
4,344,105 + MPMX20_04145 0.30 +0.5
4,344,161 - MPMX20_04145 0.34 -0.8
4,344,164 + MPMX20_04145 0.34 +0.8
4,344,172 - MPMX20_04145 0.34 -0.9
4,344,238 + MPMX20_04145 0.39 -1.0
4,344,249 + MPMX20_04145 0.40 +0.5
4,344,259 + MPMX20_04145 0.40 -0.0

Or see this region's nucleotide sequence