Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02423

Experiment: TSB plate, Mixed culture; Bacillus subtilis TBS_102 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_02421 and MPMX20_02422 overlap by 11 nucleotidesMPMX20_02422 and MPMX20_02423 are separated by 1 nucleotidesMPMX20_02423 and MPMX20_02424 are separated by 15 nucleotides MPMX20_02421: MPMX20_02421 - Inner membrane ABC transporter permease protein YdcV, at 2,558,799 to 2,559,605 _02421 MPMX20_02422: MPMX20_02422 - Inner membrane ABC transporter permease protein YdcU, at 2,559,595 to 2,560,539 _02422 MPMX20_02423: MPMX20_02423 - Spermidine/putrescine import ATP-binding protein PotA, at 2,560,541 to 2,561,554 _02423 MPMX20_02424: MPMX20_02424 - Bifunctional polyhydroxybutyrate synthase / ABC transporter periplasmic binding protein, at 2,561,570 to 2,562,715 _02424 Position (kb) 2560 2561 2562Strain fitness (log2 ratio) -2 -1 0 1 2at 2559.554 kb on + strandat 2559.557 kb on + strandat 2559.587 kb on - strandat 2559.600 kb on - strandat 2559.656 kb on + strandat 2559.665 kb on + strandat 2559.708 kb on + strand, within MPMX20_02422at 2559.708 kb on + strand, within MPMX20_02422at 2559.716 kb on - strand, within MPMX20_02422at 2559.716 kb on - strand, within MPMX20_02422at 2559.716 kb on - strand, within MPMX20_02422at 2559.992 kb on - strand, within MPMX20_02422at 2560.052 kb on + strand, within MPMX20_02422at 2560.054 kb on + strand, within MPMX20_02422at 2560.173 kb on - strand, within MPMX20_02422at 2560.251 kb on - strand, within MPMX20_02422at 2560.364 kb on + strand, within MPMX20_02422at 2560.364 kb on + strand, within MPMX20_02422at 2560.464 kb on + strandat 2560.469 kb on + strandat 2560.469 kb on + strandat 2560.469 kb on + strandat 2560.469 kb on + strandat 2560.469 kb on + strandat 2560.472 kb on - strandat 2560.477 kb on - strandat 2560.477 kb on - strandat 2560.477 kb on - strandat 2560.477 kb on - strandat 2560.477 kb on - strandat 2560.485 kb on - strandat 2560.572 kb on - strandat 2560.602 kb on - strandat 2560.622 kb on - strandat 2560.660 kb on + strand, within MPMX20_02423at 2560.668 kb on - strand, within MPMX20_02423at 2560.709 kb on + strand, within MPMX20_02423at 2560.714 kb on - strand, within MPMX20_02423at 2560.731 kb on + strand, within MPMX20_02423at 2560.737 kb on + strand, within MPMX20_02423at 2560.745 kb on - strand, within MPMX20_02423at 2560.794 kb on + strand, within MPMX20_02423at 2560.795 kb on + strand, within MPMX20_02423at 2560.883 kb on + strand, within MPMX20_02423at 2560.883 kb on + strand, within MPMX20_02423at 2560.889 kb on - strand, within MPMX20_02423at 2560.915 kb on - strand, within MPMX20_02423at 2560.946 kb on + strand, within MPMX20_02423at 2560.950 kb on + strand, within MPMX20_02423at 2560.958 kb on - strand, within MPMX20_02423at 2561.058 kb on - strand, within MPMX20_02423at 2561.100 kb on + strand, within MPMX20_02423at 2561.153 kb on - strand, within MPMX20_02423at 2561.153 kb on - strand, within MPMX20_02423at 2561.153 kb on - strand, within MPMX20_02423at 2561.160 kb on + strand, within MPMX20_02423at 2561.161 kb on + strand, within MPMX20_02423at 2561.180 kb on + strand, within MPMX20_02423at 2561.181 kb on - strand, within MPMX20_02423at 2561.274 kb on + strand, within MPMX20_02423at 2561.338 kb on + strand, within MPMX20_02423at 2561.390 kb on - strand, within MPMX20_02423at 2561.392 kb on + strand, within MPMX20_02423at 2561.481 kb on + strandat 2561.534 kb on + strandat 2561.536 kb on + strandat 2561.558 kb on - strandat 2561.600 kb on - strandat 2561.678 kb on + strandat 2561.701 kb on + strand, within MPMX20_02424at 2561.755 kb on + strand, within MPMX20_02424at 2561.785 kb on + strand, within MPMX20_02424at 2561.812 kb on - strand, within MPMX20_02424at 2561.833 kb on - strand, within MPMX20_02424at 2561.936 kb on - strand, within MPMX20_02424at 2561.936 kb on - strand, within MPMX20_02424at 2561.938 kb on + strand, within MPMX20_02424at 2561.997 kb on - strand, within MPMX20_02424at 2562.009 kb on - strand, within MPMX20_02424at 2562.015 kb on + strand, within MPMX20_02424at 2562.023 kb on - strand, within MPMX20_02424at 2562.023 kb on - strand, within MPMX20_02424at 2562.033 kb on - strand, within MPMX20_02424at 2562.047 kb on + strand, within MPMX20_02424at 2562.065 kb on + strand, within MPMX20_02424at 2562.098 kb on + strand, within MPMX20_02424at 2562.101 kb on - strand, within MPMX20_02424at 2562.159 kb on + strand, within MPMX20_02424at 2562.159 kb on + strand, within MPMX20_02424at 2562.159 kb on + strand, within MPMX20_02424at 2562.159 kb on + strand, within MPMX20_02424at 2562.167 kb on - strand, within MPMX20_02424at 2562.167 kb on - strand, within MPMX20_02424at 2562.167 kb on - strand, within MPMX20_02424at 2562.172 kb on - strand, within MPMX20_02424at 2562.184 kb on - strand, within MPMX20_02424at 2562.260 kb on + strand, within MPMX20_02424at 2562.274 kb on + strand, within MPMX20_02424at 2562.282 kb on - strand, within MPMX20_02424at 2562.282 kb on - strand, within MPMX20_02424at 2562.287 kb on - strand, within MPMX20_02424at 2562.312 kb on + strand, within MPMX20_02424at 2562.341 kb on - strand, within MPMX20_02424at 2562.375 kb on + strand, within MPMX20_02424at 2562.375 kb on + strand, within MPMX20_02424at 2562.375 kb on + strand, within MPMX20_02424at 2562.375 kb on + strand, within MPMX20_02424at 2562.376 kb on + strand, within MPMX20_02424at 2562.376 kb on + strand, within MPMX20_02424at 2562.381 kb on + strand, within MPMX20_02424at 2562.384 kb on - strand, within MPMX20_02424at 2562.429 kb on - strand, within MPMX20_02424at 2562.429 kb on - strand, within MPMX20_02424at 2562.431 kb on + strand, within MPMX20_02424at 2562.431 kb on + strand, within MPMX20_02424at 2562.433 kb on - strand, within MPMX20_02424at 2562.460 kb on - strand, within MPMX20_02424at 2562.466 kb on + strand, within MPMX20_02424at 2562.479 kb on - strand, within MPMX20_02424at 2562.509 kb on - strand, within MPMX20_02424at 2562.519 kb on - strand, within MPMX20_02424at 2562.539 kb on - strand, within MPMX20_02424at 2562.541 kb on + strand, within MPMX20_02424at 2562.549 kb on - strand, within MPMX20_02424at 2562.549 kb on - strand, within MPMX20_02424

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, Mixed culture; Bacillus subtilis TBS_102 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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2,559,554 + -2.1
2,559,557 + +0.0
2,559,587 - +0.3
2,559,600 - +0.2
2,559,656 + -0.4
2,559,665 + -0.7
2,559,708 + MPMX20_02422 0.12 +0.0
2,559,708 + MPMX20_02422 0.12 -1.2
2,559,716 - MPMX20_02422 0.13 +0.1
2,559,716 - MPMX20_02422 0.13 +0.2
2,559,716 - MPMX20_02422 0.13 -0.7
2,559,992 - MPMX20_02422 0.42 +0.6
2,560,052 + MPMX20_02422 0.48 +1.4
2,560,054 + MPMX20_02422 0.49 -1.4
2,560,173 - MPMX20_02422 0.61 -0.9
2,560,251 - MPMX20_02422 0.69 -0.3
2,560,364 + MPMX20_02422 0.81 +0.5
2,560,364 + MPMX20_02422 0.81 -1.2
2,560,464 + +0.3
2,560,469 + -2.1
2,560,469 + -1.9
2,560,469 + +1.0
2,560,469 + +1.6
2,560,469 + +0.6
2,560,472 - -0.9
2,560,477 - -2.3
2,560,477 - +1.3
2,560,477 - -0.5
2,560,477 - +0.8
2,560,477 - -0.8
2,560,485 - +0.0
2,560,572 - +0.0
2,560,602 - -0.6
2,560,622 - +0.6
2,560,660 + MPMX20_02423 0.12 -0.7
2,560,668 - MPMX20_02423 0.13 -0.6
2,560,709 + MPMX20_02423 0.17 -0.6
2,560,714 - MPMX20_02423 0.17 -1.1
2,560,731 + MPMX20_02423 0.19 -0.6
2,560,737 + MPMX20_02423 0.19 +0.9
2,560,745 - MPMX20_02423 0.20 +1.6
2,560,794 + MPMX20_02423 0.25 -0.8
2,560,795 + MPMX20_02423 0.25 -2.1
2,560,883 + MPMX20_02423 0.34 +0.6
2,560,883 + MPMX20_02423 0.34 -1.1
2,560,889 - MPMX20_02423 0.34 +0.6
2,560,915 - MPMX20_02423 0.37 +0.6
2,560,946 + MPMX20_02423 0.40 +0.4
2,560,950 + MPMX20_02423 0.40 -0.0
2,560,958 - MPMX20_02423 0.41 -0.8
2,561,058 - MPMX20_02423 0.51 -2.0
2,561,100 + MPMX20_02423 0.55 -1.2
2,561,153 - MPMX20_02423 0.60 -0.9
2,561,153 - MPMX20_02423 0.60 -0.4
2,561,153 - MPMX20_02423 0.60 -0.7
2,561,160 + MPMX20_02423 0.61 -1.6
2,561,161 + MPMX20_02423 0.61 -2.0
2,561,180 + MPMX20_02423 0.63 +1.0
2,561,181 - MPMX20_02423 0.63 -2.6
2,561,274 + MPMX20_02423 0.72 -0.1
2,561,338 + MPMX20_02423 0.79 -0.3
2,561,390 - MPMX20_02423 0.84 +2.0
2,561,392 + MPMX20_02423 0.84 -2.5
2,561,481 + -0.5
2,561,534 + +0.3
2,561,536 + -2.4
2,561,558 - +0.2
2,561,600 - +0.2
2,561,678 + -1.9
2,561,701 + MPMX20_02424 0.11 -0.8
2,561,755 + MPMX20_02424 0.16 +0.7
2,561,785 + MPMX20_02424 0.19 +0.0
2,561,812 - MPMX20_02424 0.21 -1.6
2,561,833 - MPMX20_02424 0.23 -0.6
2,561,936 - MPMX20_02424 0.32 -0.6
2,561,936 - MPMX20_02424 0.32 +1.3
2,561,938 + MPMX20_02424 0.32 +0.5
2,561,997 - MPMX20_02424 0.37 -1.0
2,562,009 - MPMX20_02424 0.38 +1.6
2,562,015 + MPMX20_02424 0.39 -0.4
2,562,023 - MPMX20_02424 0.40 -1.8
2,562,023 - MPMX20_02424 0.40 -1.0
2,562,033 - MPMX20_02424 0.40 -0.4
2,562,047 + MPMX20_02424 0.42 +0.4
2,562,065 + MPMX20_02424 0.43 -1.2
2,562,098 + MPMX20_02424 0.46 -1.4
2,562,101 - MPMX20_02424 0.46 -0.7
2,562,159 + MPMX20_02424 0.51 -0.8
2,562,159 + MPMX20_02424 0.51 -0.6
2,562,159 + MPMX20_02424 0.51 -2.1
2,562,159 + MPMX20_02424 0.51 -1.7
2,562,167 - MPMX20_02424 0.52 +0.4
2,562,167 - MPMX20_02424 0.52 -0.4
2,562,167 - MPMX20_02424 0.52 +0.8
2,562,172 - MPMX20_02424 0.53 -0.3
2,562,184 - MPMX20_02424 0.54 -1.2
2,562,260 + MPMX20_02424 0.60 +1.6
2,562,274 + MPMX20_02424 0.61 +0.3
2,562,282 - MPMX20_02424 0.62 +0.0
2,562,282 - MPMX20_02424 0.62 +0.0
2,562,287 - MPMX20_02424 0.63 +1.2
2,562,312 + MPMX20_02424 0.65 -0.4
2,562,341 - MPMX20_02424 0.67 -1.0
2,562,375 + MPMX20_02424 0.70 +0.6
2,562,375 + MPMX20_02424 0.70 -0.4
2,562,375 + MPMX20_02424 0.70 -0.7
2,562,375 + MPMX20_02424 0.70 +0.4
2,562,376 + MPMX20_02424 0.70 +0.0
2,562,376 + MPMX20_02424 0.70 -1.1
2,562,381 + MPMX20_02424 0.71 -1.0
2,562,384 - MPMX20_02424 0.71 -0.2
2,562,429 - MPMX20_02424 0.75 -1.1
2,562,429 - MPMX20_02424 0.75 -1.3
2,562,431 + MPMX20_02424 0.75 +0.0
2,562,431 + MPMX20_02424 0.75 +1.6
2,562,433 - MPMX20_02424 0.75 -0.2
2,562,460 - MPMX20_02424 0.78 -0.5
2,562,466 + MPMX20_02424 0.78 +1.4
2,562,479 - MPMX20_02424 0.79 -1.1
2,562,509 - MPMX20_02424 0.82 +0.8
2,562,519 - MPMX20_02424 0.83 -1.6
2,562,539 - MPMX20_02424 0.85 +1.0
2,562,541 + MPMX20_02424 0.85 +0.3
2,562,549 - MPMX20_02424 0.85 -0.2
2,562,549 - MPMX20_02424 0.85 +0.8

Or see this region's nucleotide sequence