Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04563

Experiment: M9 plate, Mixed culture; Bacillus subtilis TBS_102 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04562 and MPMX20_04563 are separated by 301 nucleotidesMPMX20_04563 and MPMX20_04564 overlap by 4 nucleotides MPMX20_04562: MPMX20_04562 - HTH-type transcriptional activator RhaS, at 4,773,564 to 4,774,400 _04562 MPMX20_04563: MPMX20_04563 - L-Rhamnulokinase, at 4,774,702 to 4,776,171 _04563 MPMX20_04564: MPMX20_04564 - L-rhamnose isomerase, at 4,776,168 to 4,777,427 _04564 Position (kb) 4774 4775 4776 4777Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4773.755 kb on - strand, within MPMX20_04562at 4773.755 kb on - strand, within MPMX20_04562at 4773.842 kb on - strand, within MPMX20_04562at 4773.865 kb on - strand, within MPMX20_04562at 4773.978 kb on - strand, within MPMX20_04562at 4773.992 kb on - strand, within MPMX20_04562at 4774.012 kb on - strand, within MPMX20_04562at 4774.069 kb on + strand, within MPMX20_04562at 4774.077 kb on - strand, within MPMX20_04562at 4774.077 kb on - strand, within MPMX20_04562at 4774.103 kb on + strand, within MPMX20_04562at 4774.160 kb on + strand, within MPMX20_04562at 4774.160 kb on + strand, within MPMX20_04562at 4774.168 kb on - strand, within MPMX20_04562at 4774.183 kb on + strand, within MPMX20_04562at 4774.193 kb on + strand, within MPMX20_04562at 4774.210 kb on + strand, within MPMX20_04562at 4774.242 kb on - strand, within MPMX20_04562at 4774.242 kb on - strand, within MPMX20_04562at 4774.242 kb on - strand, within MPMX20_04562at 4774.386 kb on + strandat 4774.386 kb on + strandat 4774.395 kb on + strandat 4774.538 kb on + strandat 4774.538 kb on + strandat 4774.538 kb on + strandat 4774.538 kb on + strandat 4774.635 kb on + strandat 4774.751 kb on + strandat 4774.751 kb on + strandat 4774.759 kb on - strandat 4774.841 kb on + strandat 4774.841 kb on + strandat 4774.841 kb on + strandat 4774.841 kb on + strandat 4774.841 kb on + strandat 4774.849 kb on - strand, within MPMX20_04563at 4774.849 kb on - strand, within MPMX20_04563at 4774.849 kb on - strand, within MPMX20_04563at 4774.849 kb on - strand, within MPMX20_04563at 4774.849 kb on - strand, within MPMX20_04563at 4774.849 kb on - strand, within MPMX20_04563at 4774.849 kb on - strand, within MPMX20_04563at 4774.849 kb on - strand, within MPMX20_04563at 4774.857 kb on - strand, within MPMX20_04563at 4774.865 kb on + strand, within MPMX20_04563at 4774.865 kb on + strand, within MPMX20_04563at 4774.907 kb on - strand, within MPMX20_04563at 4774.926 kb on - strand, within MPMX20_04563at 4775.029 kb on - strand, within MPMX20_04563at 4775.161 kb on - strand, within MPMX20_04563at 4775.173 kb on + strand, within MPMX20_04563at 4775.173 kb on - strand, within MPMX20_04563at 4775.200 kb on + strand, within MPMX20_04563at 4775.261 kb on - strand, within MPMX20_04563at 4775.276 kb on + strand, within MPMX20_04563at 4775.292 kb on + strand, within MPMX20_04563at 4775.300 kb on - strand, within MPMX20_04563at 4775.381 kb on - strand, within MPMX20_04563at 4775.509 kb on + strand, within MPMX20_04563at 4775.568 kb on + strand, within MPMX20_04563at 4775.615 kb on - strand, within MPMX20_04563at 4775.644 kb on - strand, within MPMX20_04563at 4775.764 kb on + strand, within MPMX20_04563at 4775.765 kb on + strand, within MPMX20_04563at 4775.839 kb on + strand, within MPMX20_04563at 4775.840 kb on - strand, within MPMX20_04563at 4775.840 kb on - strand, within MPMX20_04563at 4775.840 kb on - strand, within MPMX20_04563at 4775.954 kb on + strand, within MPMX20_04563at 4776.020 kb on - strand, within MPMX20_04563at 4776.209 kb on + strandat 4776.217 kb on - strandat 4776.238 kb on + strandat 4776.278 kb on - strandat 4776.323 kb on - strand, within MPMX20_04564at 4776.382 kb on + strand, within MPMX20_04564at 4776.400 kb on + strand, within MPMX20_04564at 4776.407 kb on - strand, within MPMX20_04564at 4776.412 kb on + strand, within MPMX20_04564at 4776.517 kb on + strand, within MPMX20_04564at 4776.598 kb on + strand, within MPMX20_04564at 4776.598 kb on + strand, within MPMX20_04564at 4776.598 kb on + strand, within MPMX20_04564at 4776.606 kb on - strand, within MPMX20_04564at 4776.606 kb on - strand, within MPMX20_04564at 4776.643 kb on - strand, within MPMX20_04564at 4776.650 kb on + strand, within MPMX20_04564at 4776.650 kb on + strand, within MPMX20_04564at 4776.679 kb on + strand, within MPMX20_04564at 4776.680 kb on - strand, within MPMX20_04564at 4776.700 kb on - strand, within MPMX20_04564at 4776.747 kb on + strand, within MPMX20_04564at 4776.800 kb on - strand, within MPMX20_04564at 4776.838 kb on - strand, within MPMX20_04564at 4776.862 kb on - strand, within MPMX20_04564at 4776.867 kb on - strand, within MPMX20_04564at 4776.880 kb on + strand, within MPMX20_04564at 4776.880 kb on - strand, within MPMX20_04564at 4776.914 kb on - strand, within MPMX20_04564at 4776.998 kb on + strand, within MPMX20_04564at 4777.080 kb on + strand, within MPMX20_04564

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, Mixed culture; Bacillus subtilis TBS_102 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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4,773,755 - MPMX20_04562 0.23 -2.4
4,773,755 - MPMX20_04562 0.23 +0.5
4,773,842 - MPMX20_04562 0.33 +0.3
4,773,865 - MPMX20_04562 0.36 +1.2
4,773,978 - MPMX20_04562 0.49 -0.2
4,773,992 - MPMX20_04562 0.51 -1.5
4,774,012 - MPMX20_04562 0.54 +0.4
4,774,069 + MPMX20_04562 0.60 -0.9
4,774,077 - MPMX20_04562 0.61 +1.8
4,774,077 - MPMX20_04562 0.61 -1.2
4,774,103 + MPMX20_04562 0.64 -1.6
4,774,160 + MPMX20_04562 0.71 -0.7
4,774,160 + MPMX20_04562 0.71 +0.5
4,774,168 - MPMX20_04562 0.72 -0.1
4,774,183 + MPMX20_04562 0.74 -1.5
4,774,193 + MPMX20_04562 0.75 +0.8
4,774,210 + MPMX20_04562 0.77 -0.7
4,774,242 - MPMX20_04562 0.81 +0.4
4,774,242 - MPMX20_04562 0.81 -0.7
4,774,242 - MPMX20_04562 0.81 -1.7
4,774,386 + -2.5
4,774,386 + -1.5
4,774,395 + -0.3
4,774,538 + +0.4
4,774,538 + -0.9
4,774,538 + -0.6
4,774,538 + +1.8
4,774,635 + -0.2
4,774,751 + +1.1
4,774,751 + +3.3
4,774,759 - +0.4
4,774,841 + -0.2
4,774,841 + +2.8
4,774,841 + -1.0
4,774,841 + +0.3
4,774,841 + -1.5
4,774,849 - MPMX20_04563 0.10 +0.0
4,774,849 - MPMX20_04563 0.10 +2.8
4,774,849 - MPMX20_04563 0.10 +1.8
4,774,849 - MPMX20_04563 0.10 +0.4
4,774,849 - MPMX20_04563 0.10 +1.7
4,774,849 - MPMX20_04563 0.10 +1.3
4,774,849 - MPMX20_04563 0.10 +0.6
4,774,849 - MPMX20_04563 0.10 +0.5
4,774,857 - MPMX20_04563 0.11 -0.9
4,774,865 + MPMX20_04563 0.11 -0.5
4,774,865 + MPMX20_04563 0.11 +0.5
4,774,907 - MPMX20_04563 0.14 -3.1
4,774,926 - MPMX20_04563 0.15 +0.3
4,775,029 - MPMX20_04563 0.22 -1.3
4,775,161 - MPMX20_04563 0.31 -1.0
4,775,173 + MPMX20_04563 0.32 -0.8
4,775,173 - MPMX20_04563 0.32 +1.3
4,775,200 + MPMX20_04563 0.34 -1.2
4,775,261 - MPMX20_04563 0.38 +1.3
4,775,276 + MPMX20_04563 0.39 -0.4
4,775,292 + MPMX20_04563 0.40 -1.6
4,775,300 - MPMX20_04563 0.41 +2.4
4,775,381 - MPMX20_04563 0.46 +0.1
4,775,509 + MPMX20_04563 0.55 +1.1
4,775,568 + MPMX20_04563 0.59 +1.8
4,775,615 - MPMX20_04563 0.62 -2.6
4,775,644 - MPMX20_04563 0.64 +1.3
4,775,764 + MPMX20_04563 0.72 -1.5
4,775,765 + MPMX20_04563 0.72 +2.8
4,775,839 + MPMX20_04563 0.77 +1.0
4,775,840 - MPMX20_04563 0.77 +2.8
4,775,840 - MPMX20_04563 0.77 -0.7
4,775,840 - MPMX20_04563 0.77 -0.1
4,775,954 + MPMX20_04563 0.85 +1.5
4,776,020 - MPMX20_04563 0.90 -0.2
4,776,209 + +0.2
4,776,217 - -0.7
4,776,238 + +0.9
4,776,278 - +0.3
4,776,323 - MPMX20_04564 0.12 +1.0
4,776,382 + MPMX20_04564 0.17 +2.8
4,776,400 + MPMX20_04564 0.18 -1.1
4,776,407 - MPMX20_04564 0.19 -0.5
4,776,412 + MPMX20_04564 0.19 +0.3
4,776,517 + MPMX20_04564 0.28 -0.4
4,776,598 + MPMX20_04564 0.34 +0.0
4,776,598 + MPMX20_04564 0.34 +0.9
4,776,598 + MPMX20_04564 0.34 -0.6
4,776,606 - MPMX20_04564 0.35 +0.6
4,776,606 - MPMX20_04564 0.35 -1.2
4,776,643 - MPMX20_04564 0.38 +4.4
4,776,650 + MPMX20_04564 0.38 -0.3
4,776,650 + MPMX20_04564 0.38 +0.5
4,776,679 + MPMX20_04564 0.41 -1.1
4,776,680 - MPMX20_04564 0.41 -1.8
4,776,700 - MPMX20_04564 0.42 +0.7
4,776,747 + MPMX20_04564 0.46 -0.9
4,776,800 - MPMX20_04564 0.50 -0.9
4,776,838 - MPMX20_04564 0.53 +2.8
4,776,862 - MPMX20_04564 0.55 +0.0
4,776,867 - MPMX20_04564 0.55 -0.7
4,776,880 + MPMX20_04564 0.57 -1.9
4,776,880 - MPMX20_04564 0.57 +0.3
4,776,914 - MPMX20_04564 0.59 +1.6
4,776,998 + MPMX20_04564 0.66 +1.8
4,777,080 + MPMX20_04564 0.72 +0.7

Or see this region's nucleotide sequence