Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03912

Experiment: M9 plate, Mixed culture; Bacillus subtilis TBS_102 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03909 and MPMX20_03910 are separated by 84 nucleotidesMPMX20_03910 and MPMX20_03911 are separated by 112 nucleotidesMPMX20_03911 and MPMX20_03912 are separated by 145 nucleotidesMPMX20_03912 and MPMX20_03913 overlap by 45 nucleotidesMPMX20_03913 and MPMX20_03914 are separated by 619 nucleotides MPMX20_03909: MPMX20_03909 - RNA polymerase sigma factor RpoD, at 4,118,146 to 4,119,993 _03909 MPMX20_03910: MPMX20_03910 - G/U mismatch-specific DNA glycosylase, at 4,120,078 to 4,120,596 _03910 MPMX20_03911: MPMX20_03911 - tRNA-Met, at 4,120,709 to 4,120,784 _03911 MPMX20_03912: MPMX20_03912 - hypothetical protein, at 4,120,930 to 4,121,424 _03912 MPMX20_03913: MPMX20_03913 - hypothetical protein, at 4,121,380 to 4,121,718 _03913 MPMX20_03914: MPMX20_03914 - hypothetical protein, at 4,122,338 to 4,124,014 _03914 Position (kb) 4120 4121 4122Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 4120.054 kb on + strandat 4120.094 kb on + strandat 4120.096 kb on - strandat 4120.118 kb on - strandat 4120.129 kb on - strandat 4120.130 kb on + strand, within MPMX20_03910at 4120.130 kb on + strand, within MPMX20_03910at 4120.135 kb on + strand, within MPMX20_03910at 4120.148 kb on - strand, within MPMX20_03910at 4120.175 kb on + strand, within MPMX20_03910at 4120.175 kb on + strand, within MPMX20_03910at 4120.175 kb on + strand, within MPMX20_03910at 4120.175 kb on + strand, within MPMX20_03910at 4120.183 kb on - strand, within MPMX20_03910at 4120.183 kb on - strand, within MPMX20_03910at 4120.183 kb on - strand, within MPMX20_03910at 4120.183 kb on - strand, within MPMX20_03910at 4120.183 kb on - strand, within MPMX20_03910at 4120.185 kb on + strand, within MPMX20_03910at 4120.322 kb on + strand, within MPMX20_03910at 4120.322 kb on + strand, within MPMX20_03910at 4120.330 kb on - strand, within MPMX20_03910at 4120.341 kb on + strand, within MPMX20_03910at 4120.342 kb on + strand, within MPMX20_03910at 4120.347 kb on + strand, within MPMX20_03910at 4120.354 kb on + strand, within MPMX20_03910at 4120.354 kb on + strand, within MPMX20_03910at 4120.356 kb on + strand, within MPMX20_03910at 4120.364 kb on - strand, within MPMX20_03910at 4120.369 kb on - strand, within MPMX20_03910at 4120.416 kb on + strand, within MPMX20_03910at 4120.427 kb on + strand, within MPMX20_03910at 4120.467 kb on + strand, within MPMX20_03910at 4120.538 kb on - strand, within MPMX20_03910at 4120.558 kb on + strandat 4120.584 kb on + strandat 4120.584 kb on + strandat 4120.592 kb on - strandat 4120.658 kb on + strandat 4120.666 kb on - strandat 4120.666 kb on - strandat 4120.888 kb on + strandat 4120.966 kb on + strandat 4121.009 kb on + strand, within MPMX20_03912at 4121.017 kb on - strand, within MPMX20_03912at 4121.017 kb on - strand, within MPMX20_03912at 4121.017 kb on - strand, within MPMX20_03912at 4121.045 kb on + strand, within MPMX20_03912at 4121.053 kb on - strand, within MPMX20_03912at 4121.109 kb on + strand, within MPMX20_03912at 4121.109 kb on + strand, within MPMX20_03912at 4121.109 kb on + strand, within MPMX20_03912at 4121.109 kb on + strand, within MPMX20_03912at 4121.109 kb on + strand, within MPMX20_03912at 4121.109 kb on + strand, within MPMX20_03912at 4121.109 kb on + strand, within MPMX20_03912at 4121.109 kb on + strand, within MPMX20_03912at 4121.117 kb on - strand, within MPMX20_03912at 4121.117 kb on - strand, within MPMX20_03912at 4121.117 kb on - strand, within MPMX20_03912at 4121.117 kb on - strand, within MPMX20_03912at 4121.127 kb on - strand, within MPMX20_03912at 4121.127 kb on - strand, within MPMX20_03912at 4121.127 kb on - strand, within MPMX20_03912at 4121.127 kb on - strand, within MPMX20_03912at 4121.127 kb on - strand, within MPMX20_03912at 4121.127 kb on - strand, within MPMX20_03912at 4121.127 kb on - strand, within MPMX20_03912at 4121.127 kb on - strand, within MPMX20_03912at 4121.127 kb on - strand, within MPMX20_03912at 4121.129 kb on + strand, within MPMX20_03912at 4121.182 kb on + strand, within MPMX20_03912at 4121.235 kb on - strand, within MPMX20_03912at 4121.266 kb on + strand, within MPMX20_03912at 4121.296 kb on + strand, within MPMX20_03912at 4121.317 kb on + strand, within MPMX20_03912at 4121.343 kb on + strand, within MPMX20_03912at 4121.343 kb on + strand, within MPMX20_03912at 4121.343 kb on + strand, within MPMX20_03912at 4121.351 kb on - strand, within MPMX20_03912at 4121.351 kb on - strand, within MPMX20_03912at 4121.355 kb on - strand, within MPMX20_03912at 4121.396 kb on + strandat 4121.404 kb on - strandat 4121.404 kb on - strandat 4121.408 kb on - strandat 4121.471 kb on + strand, within MPMX20_03913at 4121.472 kb on - strand, within MPMX20_03913at 4121.501 kb on + strand, within MPMX20_03913at 4121.501 kb on + strand, within MPMX20_03913at 4121.509 kb on - strand, within MPMX20_03913at 4121.509 kb on - strand, within MPMX20_03913at 4121.509 kb on - strand, within MPMX20_03913at 4121.509 kb on - strand, within MPMX20_03913at 4121.553 kb on + strand, within MPMX20_03913at 4121.568 kb on - strand, within MPMX20_03913at 4121.588 kb on - strand, within MPMX20_03913at 4121.661 kb on + strand, within MPMX20_03913at 4121.669 kb on - strand, within MPMX20_03913at 4121.670 kb on - strand, within MPMX20_03913at 4121.683 kb on + strand, within MPMX20_03913at 4121.691 kb on - strandat 4121.715 kb on + strandat 4121.718 kb on + strandat 4121.723 kb on - strandat 4121.827 kb on - strandat 4121.829 kb on + strandat 4121.829 kb on + strandat 4121.829 kb on + strandat 4121.829 kb on + strandat 4121.829 kb on + strandat 4121.829 kb on + strandat 4121.829 kb on + strandat 4121.829 kb on + strandat 4121.837 kb on - strandat 4121.837 kb on - strandat 4121.837 kb on - strandat 4121.841 kb on + strandat 4122.017 kb on + strandat 4122.022 kb on + strandat 4122.025 kb on - strandat 4122.089 kb on + strandat 4122.101 kb on - strandat 4122.102 kb on - strandat 4122.149 kb on + strandat 4122.157 kb on - strandat 4122.169 kb on - strandat 4122.177 kb on + strandat 4122.208 kb on + strandat 4122.286 kb on + strandat 4122.286 kb on + strandat 4122.325 kb on + strandat 4122.325 kb on + strandat 4122.325 kb on + strandat 4122.330 kb on + strandat 4122.343 kb on - strandat 4122.343 kb on - strandat 4122.395 kb on + strandat 4122.403 kb on - strandat 4122.416 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, Mixed culture; Bacillus subtilis TBS_102 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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4,120,054 + -0.9
4,120,094 + -0.2
4,120,096 - -1.4
4,120,118 - +0.1
4,120,129 - -1.3
4,120,130 + MPMX20_03910 0.10 -1.0
4,120,130 + MPMX20_03910 0.10 -0.2
4,120,135 + MPMX20_03910 0.11 +0.1
4,120,148 - MPMX20_03910 0.13 +1.3
4,120,175 + MPMX20_03910 0.19 -2.3
4,120,175 + MPMX20_03910 0.19 +0.5
4,120,175 + MPMX20_03910 0.19 -0.4
4,120,175 + MPMX20_03910 0.19 -0.7
4,120,183 - MPMX20_03910 0.20 -0.8
4,120,183 - MPMX20_03910 0.20 +1.2
4,120,183 - MPMX20_03910 0.20 +1.7
4,120,183 - MPMX20_03910 0.20 +1.4
4,120,183 - MPMX20_03910 0.20 -0.7
4,120,185 + MPMX20_03910 0.21 -1.3
4,120,322 + MPMX20_03910 0.47 -0.3
4,120,322 + MPMX20_03910 0.47 -2.0
4,120,330 - MPMX20_03910 0.49 +2.3
4,120,341 + MPMX20_03910 0.51 -3.2
4,120,342 + MPMX20_03910 0.51 -1.4
4,120,347 + MPMX20_03910 0.52 +1.7
4,120,354 + MPMX20_03910 0.53 +0.7
4,120,354 + MPMX20_03910 0.53 -1.9
4,120,356 + MPMX20_03910 0.54 +1.1
4,120,364 - MPMX20_03910 0.55 +1.4
4,120,369 - MPMX20_03910 0.56 -0.3
4,120,416 + MPMX20_03910 0.65 -0.4
4,120,427 + MPMX20_03910 0.67 +0.2
4,120,467 + MPMX20_03910 0.75 -1.6
4,120,538 - MPMX20_03910 0.89 -0.5
4,120,558 + +2.2
4,120,584 + -1.0
4,120,584 + -2.2
4,120,592 - +0.2
4,120,658 + -2.4
4,120,666 - +0.3
4,120,666 - +1.3
4,120,888 + +1.7
4,120,966 + -1.3
4,121,009 + MPMX20_03912 0.16 -0.3
4,121,017 - MPMX20_03912 0.18 +0.1
4,121,017 - MPMX20_03912 0.18 -0.8
4,121,017 - MPMX20_03912 0.18 +1.9
4,121,045 + MPMX20_03912 0.23 -1.7
4,121,053 - MPMX20_03912 0.25 +1.1
4,121,109 + MPMX20_03912 0.36 -1.1
4,121,109 + MPMX20_03912 0.36 +6.1
4,121,109 + MPMX20_03912 0.36 -1.1
4,121,109 + MPMX20_03912 0.36 -2.4
4,121,109 + MPMX20_03912 0.36 +1.3
4,121,109 + MPMX20_03912 0.36 -0.4
4,121,109 + MPMX20_03912 0.36 +4.7
4,121,109 + MPMX20_03912 0.36 -2.0
4,121,117 - MPMX20_03912 0.38 +0.4
4,121,117 - MPMX20_03912 0.38 -2.5
4,121,117 - MPMX20_03912 0.38 +1.1
4,121,117 - MPMX20_03912 0.38 -0.8
4,121,127 - MPMX20_03912 0.40 -3.2
4,121,127 - MPMX20_03912 0.40 -1.0
4,121,127 - MPMX20_03912 0.40 -1.3
4,121,127 - MPMX20_03912 0.40 -2.2
4,121,127 - MPMX20_03912 0.40 +0.7
4,121,127 - MPMX20_03912 0.40 +2.7
4,121,127 - MPMX20_03912 0.40 +1.9
4,121,127 - MPMX20_03912 0.40 -0.0
4,121,127 - MPMX20_03912 0.40 +0.4
4,121,129 + MPMX20_03912 0.40 +1.5
4,121,182 + MPMX20_03912 0.51 -0.3
4,121,235 - MPMX20_03912 0.62 -0.9
4,121,266 + MPMX20_03912 0.68 +0.0
4,121,296 + MPMX20_03912 0.74 +0.1
4,121,317 + MPMX20_03912 0.78 +0.3
4,121,343 + MPMX20_03912 0.83 -1.9
4,121,343 + MPMX20_03912 0.83 +0.1
4,121,343 + MPMX20_03912 0.83 -2.0
4,121,351 - MPMX20_03912 0.85 -2.8
4,121,351 - MPMX20_03912 0.85 +1.7
4,121,355 - MPMX20_03912 0.86 +1.7
4,121,396 + +0.6
4,121,404 - -1.2
4,121,404 - +2.6
4,121,408 - +0.6
4,121,471 + MPMX20_03913 0.27 -1.3
4,121,472 - MPMX20_03913 0.27 -0.0
4,121,501 + MPMX20_03913 0.36 -1.1
4,121,501 + MPMX20_03913 0.36 -0.1
4,121,509 - MPMX20_03913 0.38 +0.2
4,121,509 - MPMX20_03913 0.38 +0.6
4,121,509 - MPMX20_03913 0.38 -0.5
4,121,509 - MPMX20_03913 0.38 +1.6
4,121,553 + MPMX20_03913 0.51 +1.3
4,121,568 - MPMX20_03913 0.55 +0.6
4,121,588 - MPMX20_03913 0.61 -0.9
4,121,661 + MPMX20_03913 0.83 +0.6
4,121,669 - MPMX20_03913 0.85 -2.9
4,121,670 - MPMX20_03913 0.86 -0.2
4,121,683 + MPMX20_03913 0.89 +1.3
4,121,691 - -1.3
4,121,715 + +1.5
4,121,718 + +0.6
4,121,723 - -0.3
4,121,827 - -0.5
4,121,829 + -2.4
4,121,829 + +0.7
4,121,829 + -1.7
4,121,829 + +4.6
4,121,829 + -0.5
4,121,829 + +1.6
4,121,829 + -1.4
4,121,829 + -1.4
4,121,837 - -0.9
4,121,837 - -1.1
4,121,837 - -2.1
4,121,841 + +1.1
4,122,017 + -0.8
4,122,022 + +0.2
4,122,025 - +0.2
4,122,089 + +1.1
4,122,101 - +0.6
4,122,102 - +0.6
4,122,149 + -2.4
4,122,157 - +1.6
4,122,169 - +0.5
4,122,177 + -0.4
4,122,208 + +0.3
4,122,286 + -0.2
4,122,286 + -1.5
4,122,325 + +1.3
4,122,325 + -0.8
4,122,325 + -1.3
4,122,330 + -0.9
4,122,343 - -0.3
4,122,343 - +1.3
4,122,395 + -0.7
4,122,403 - +0.9
4,122,416 + -0.0

Or see this region's nucleotide sequence