Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03347

Experiment: M9 plate, Mixed culture; Bacillus subtilis TBS_102 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03345 and MPMX20_03346 overlap by 4 nucleotidesMPMX20_03346 and MPMX20_03347 are separated by 145 nucleotidesMPMX20_03347 and MPMX20_03348 are separated by 3 nucleotidesMPMX20_03348 and MPMX20_03349 overlap by 1 nucleotides MPMX20_03345: MPMX20_03345 - putative protein YfgD, at 3,518,698 to 3,519,054 _03345 MPMX20_03346: MPMX20_03346 - hypothetical protein, at 3,519,051 to 3,519,875 _03346 MPMX20_03347: MPMX20_03347 - Lichenan permease IIC component, at 3,520,021 to 3,521,340 _03347 MPMX20_03348: MPMX20_03348 - N(4)-(Beta-N-acetylglucosaminyl)-L-asparaginase, at 3,521,344 to 3,522,300 _03348 MPMX20_03349: MPMX20_03349 - cytosol aminopeptidase, at 3,522,300 to 3,523,721 _03349 Position (kb) 3520 3521 3522Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 3519.048 kb on + strandat 3519.049 kb on + strandat 3519.180 kb on - strand, within MPMX20_03346at 3519.213 kb on - strand, within MPMX20_03346at 3519.220 kb on + strand, within MPMX20_03346at 3519.327 kb on - strand, within MPMX20_03346at 3519.375 kb on + strand, within MPMX20_03346at 3519.375 kb on + strand, within MPMX20_03346at 3519.396 kb on + strand, within MPMX20_03346at 3519.594 kb on + strand, within MPMX20_03346at 3519.646 kb on + strand, within MPMX20_03346at 3519.656 kb on + strand, within MPMX20_03346at 3519.779 kb on + strand, within MPMX20_03346at 3519.815 kb on + strandat 3519.844 kb on + strandat 3520.023 kb on + strandat 3520.131 kb on + strandat 3520.194 kb on + strand, within MPMX20_03347at 3520.257 kb on + strand, within MPMX20_03347at 3520.257 kb on + strand, within MPMX20_03347at 3520.257 kb on + strand, within MPMX20_03347at 3520.273 kb on - strand, within MPMX20_03347at 3520.275 kb on + strand, within MPMX20_03347at 3520.295 kb on + strand, within MPMX20_03347at 3520.306 kb on + strand, within MPMX20_03347at 3520.306 kb on + strand, within MPMX20_03347at 3520.314 kb on - strand, within MPMX20_03347at 3520.375 kb on + strand, within MPMX20_03347at 3520.436 kb on + strand, within MPMX20_03347at 3520.441 kb on + strand, within MPMX20_03347at 3520.444 kb on - strand, within MPMX20_03347at 3520.444 kb on - strand, within MPMX20_03347at 3520.470 kb on + strand, within MPMX20_03347at 3520.478 kb on - strand, within MPMX20_03347at 3520.524 kb on + strand, within MPMX20_03347at 3520.569 kb on + strand, within MPMX20_03347at 3520.569 kb on + strand, within MPMX20_03347at 3520.579 kb on - strand, within MPMX20_03347at 3520.632 kb on + strand, within MPMX20_03347at 3520.632 kb on + strand, within MPMX20_03347at 3520.632 kb on + strand, within MPMX20_03347at 3520.640 kb on - strand, within MPMX20_03347at 3520.640 kb on - strand, within MPMX20_03347at 3520.640 kb on - strand, within MPMX20_03347at 3520.640 kb on - strand, within MPMX20_03347at 3520.640 kb on - strand, within MPMX20_03347at 3520.640 kb on - strand, within MPMX20_03347at 3520.673 kb on - strand, within MPMX20_03347at 3520.862 kb on - strand, within MPMX20_03347at 3520.909 kb on - strand, within MPMX20_03347at 3521.315 kb on + strandat 3521.394 kb on + strandat 3521.458 kb on + strand, within MPMX20_03348at 3521.475 kb on + strand, within MPMX20_03348at 3521.483 kb on - strand, within MPMX20_03348at 3521.677 kb on - strand, within MPMX20_03348at 3521.680 kb on + strand, within MPMX20_03348at 3521.689 kb on - strand, within MPMX20_03348at 3521.733 kb on + strand, within MPMX20_03348at 3521.744 kb on + strand, within MPMX20_03348at 3521.744 kb on + strand, within MPMX20_03348at 3521.764 kb on + strand, within MPMX20_03348at 3521.765 kb on + strand, within MPMX20_03348at 3521.772 kb on - strand, within MPMX20_03348at 3521.772 kb on - strand, within MPMX20_03348at 3521.773 kb on - strand, within MPMX20_03348at 3521.900 kb on + strand, within MPMX20_03348at 3521.938 kb on + strand, within MPMX20_03348at 3521.961 kb on - strand, within MPMX20_03348at 3521.962 kb on - strand, within MPMX20_03348at 3522.009 kb on + strand, within MPMX20_03348at 3522.009 kb on + strand, within MPMX20_03348at 3522.009 kb on + strand, within MPMX20_03348at 3522.121 kb on + strand, within MPMX20_03348at 3522.144 kb on + strand, within MPMX20_03348at 3522.253 kb on + strandat 3522.253 kb on + strandat 3522.258 kb on + strandat 3522.258 kb on + strandat 3522.258 kb on + strandat 3522.266 kb on - strandat 3522.266 kb on - strandat 3522.286 kb on + strandat 3522.315 kb on - strandat 3522.315 kb on - strandat 3522.319 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, Mixed culture; Bacillus subtilis TBS_102 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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3,519,048 + -1.1
3,519,049 + -2.5
3,519,180 - MPMX20_03346 0.16 +3.3
3,519,213 - MPMX20_03346 0.20 -1.3
3,519,220 + MPMX20_03346 0.20 -0.1
3,519,327 - MPMX20_03346 0.33 +0.4
3,519,375 + MPMX20_03346 0.39 +1.7
3,519,375 + MPMX20_03346 0.39 +0.5
3,519,396 + MPMX20_03346 0.42 -1.8
3,519,594 + MPMX20_03346 0.66 -0.4
3,519,646 + MPMX20_03346 0.72 -1.4
3,519,656 + MPMX20_03346 0.73 -0.6
3,519,779 + MPMX20_03346 0.88 +1.0
3,519,815 + -1.4
3,519,844 + -0.6
3,520,023 + +0.0
3,520,131 + -0.3
3,520,194 + MPMX20_03347 0.13 -2.0
3,520,257 + MPMX20_03347 0.18 +4.5
3,520,257 + MPMX20_03347 0.18 +2.0
3,520,257 + MPMX20_03347 0.18 +0.0
3,520,273 - MPMX20_03347 0.19 +1.7
3,520,275 + MPMX20_03347 0.19 -0.3
3,520,295 + MPMX20_03347 0.21 -2.1
3,520,306 + MPMX20_03347 0.22 -0.0
3,520,306 + MPMX20_03347 0.22 -0.1
3,520,314 - MPMX20_03347 0.22 +0.3
3,520,375 + MPMX20_03347 0.27 -0.4
3,520,436 + MPMX20_03347 0.31 -0.1
3,520,441 + MPMX20_03347 0.32 -0.1
3,520,444 - MPMX20_03347 0.32 +0.4
3,520,444 - MPMX20_03347 0.32 -1.0
3,520,470 + MPMX20_03347 0.34 +0.1
3,520,478 - MPMX20_03347 0.35 +1.7
3,520,524 + MPMX20_03347 0.38 -1.5
3,520,569 + MPMX20_03347 0.42 -0.1
3,520,569 + MPMX20_03347 0.42 +1.1
3,520,579 - MPMX20_03347 0.42 +1.6
3,520,632 + MPMX20_03347 0.46 -1.7
3,520,632 + MPMX20_03347 0.46 +2.7
3,520,632 + MPMX20_03347 0.46 -2.5
3,520,640 - MPMX20_03347 0.47 +0.8
3,520,640 - MPMX20_03347 0.47 +0.7
3,520,640 - MPMX20_03347 0.47 -1.1
3,520,640 - MPMX20_03347 0.47 -1.3
3,520,640 - MPMX20_03347 0.47 -1.4
3,520,640 - MPMX20_03347 0.47 +0.3
3,520,673 - MPMX20_03347 0.49 -1.0
3,520,862 - MPMX20_03347 0.64 -0.8
3,520,909 - MPMX20_03347 0.67 +1.3
3,521,315 + +0.2
3,521,394 + +5.9
3,521,458 + MPMX20_03348 0.12 +0.7
3,521,475 + MPMX20_03348 0.14 -0.6
3,521,483 - MPMX20_03348 0.15 -0.2
3,521,677 - MPMX20_03348 0.35 -1.0
3,521,680 + MPMX20_03348 0.35 +1.3
3,521,689 - MPMX20_03348 0.36 -0.1
3,521,733 + MPMX20_03348 0.41 -2.7
3,521,744 + MPMX20_03348 0.42 -0.1
3,521,744 + MPMX20_03348 0.42 -0.3
3,521,764 + MPMX20_03348 0.44 +0.7
3,521,765 + MPMX20_03348 0.44 +0.4
3,521,772 - MPMX20_03348 0.45 -1.4
3,521,772 - MPMX20_03348 0.45 -1.4
3,521,773 - MPMX20_03348 0.45 -0.1
3,521,900 + MPMX20_03348 0.58 -0.2
3,521,938 + MPMX20_03348 0.62 +1.7
3,521,961 - MPMX20_03348 0.64 -1.0
3,521,962 - MPMX20_03348 0.65 -0.1
3,522,009 + MPMX20_03348 0.69 +2.0
3,522,009 + MPMX20_03348 0.69 -1.2
3,522,009 + MPMX20_03348 0.69 +0.1
3,522,121 + MPMX20_03348 0.81 +0.7
3,522,144 + MPMX20_03348 0.84 +1.1
3,522,253 + +0.9
3,522,253 + +0.4
3,522,258 + +0.4
3,522,258 + -1.1
3,522,258 + +3.3
3,522,266 - -1.8
3,522,266 - -0.8
3,522,286 + -0.3
3,522,315 - -1.9
3,522,315 - -0.3
3,522,319 + -0.9

Or see this region's nucleotide sequence