Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02735

Experiment: M9 plate, Mixed culture; Bacillus subtilis TBS_102 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_02734 and MPMX20_02735 are separated by 178 nucleotidesMPMX20_02735 and MPMX20_02736 are separated by 48 nucleotides MPMX20_02734: MPMX20_02734 - Transcriptional regulator KdgR, at 2,887,122 to 2,887,913 _02734 MPMX20_02735: MPMX20_02735 - Riboflavin transporter RibZ, at 2,888,092 to 2,889,465 _02735 MPMX20_02736: MPMX20_02736 - Protease HtpX, at 2,889,514 to 2,890,395 _02736 Position (kb) 2888 2889 2890Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 2887.120 kb on + strandat 2887.128 kb on - strandat 2887.158 kb on + strandat 2887.171 kb on + strandat 2887.171 kb on + strandat 2887.194 kb on - strandat 2887.205 kb on - strand, within MPMX20_02734at 2887.259 kb on + strand, within MPMX20_02734at 2887.283 kb on + strand, within MPMX20_02734at 2887.291 kb on - strand, within MPMX20_02734at 2887.300 kb on + strand, within MPMX20_02734at 2887.301 kb on - strand, within MPMX20_02734at 2887.301 kb on - strand, within MPMX20_02734at 2887.306 kb on - strand, within MPMX20_02734at 2887.335 kb on - strand, within MPMX20_02734at 2887.387 kb on - strand, within MPMX20_02734at 2887.391 kb on + strand, within MPMX20_02734at 2887.396 kb on + strand, within MPMX20_02734at 2887.399 kb on - strand, within MPMX20_02734at 2887.399 kb on - strand, within MPMX20_02734at 2887.399 kb on - strand, within MPMX20_02734at 2887.410 kb on - strand, within MPMX20_02734at 2887.418 kb on - strand, within MPMX20_02734at 2887.436 kb on - strand, within MPMX20_02734at 2887.478 kb on + strand, within MPMX20_02734at 2887.492 kb on + strand, within MPMX20_02734at 2887.493 kb on + strand, within MPMX20_02734at 2887.501 kb on - strand, within MPMX20_02734at 2887.551 kb on + strand, within MPMX20_02734at 2887.559 kb on - strand, within MPMX20_02734at 2887.564 kb on - strand, within MPMX20_02734at 2887.569 kb on - strand, within MPMX20_02734at 2887.603 kb on - strand, within MPMX20_02734at 2887.607 kb on + strand, within MPMX20_02734at 2887.622 kb on - strand, within MPMX20_02734at 2887.631 kb on + strand, within MPMX20_02734at 2887.732 kb on + strand, within MPMX20_02734at 2887.732 kb on + strand, within MPMX20_02734at 2887.732 kb on + strand, within MPMX20_02734at 2887.740 kb on - strand, within MPMX20_02734at 2887.740 kb on - strand, within MPMX20_02734at 2887.745 kb on + strand, within MPMX20_02734at 2887.745 kb on + strand, within MPMX20_02734at 2887.808 kb on + strand, within MPMX20_02734at 2887.831 kb on + strand, within MPMX20_02734at 2887.851 kb on + strandat 2887.918 kb on - strandat 2888.127 kb on - strandat 2888.130 kb on + strandat 2888.130 kb on + strandat 2888.141 kb on - strandat 2888.184 kb on - strandat 2888.184 kb on - strandat 2888.184 kb on - strandat 2888.272 kb on - strand, within MPMX20_02735at 2888.353 kb on + strand, within MPMX20_02735at 2888.381 kb on + strand, within MPMX20_02735at 2888.457 kb on - strand, within MPMX20_02735at 2888.457 kb on - strand, within MPMX20_02735at 2888.457 kb on - strand, within MPMX20_02735at 2888.457 kb on - strand, within MPMX20_02735at 2888.470 kb on + strand, within MPMX20_02735at 2888.478 kb on - strand, within MPMX20_02735at 2888.558 kb on + strand, within MPMX20_02735at 2888.558 kb on + strand, within MPMX20_02735at 2888.558 kb on + strand, within MPMX20_02735at 2888.558 kb on + strand, within MPMX20_02735at 2888.583 kb on - strand, within MPMX20_02735at 2888.643 kb on + strand, within MPMX20_02735at 2888.696 kb on + strand, within MPMX20_02735at 2888.696 kb on + strand, within MPMX20_02735at 2888.704 kb on - strand, within MPMX20_02735at 2888.704 kb on - strand, within MPMX20_02735at 2888.704 kb on - strand, within MPMX20_02735at 2888.704 kb on - strand, within MPMX20_02735at 2888.704 kb on - strand, within MPMX20_02735at 2888.724 kb on - strand, within MPMX20_02735at 2888.733 kb on - strand, within MPMX20_02735at 2888.740 kb on - strand, within MPMX20_02735at 2888.740 kb on - strand, within MPMX20_02735at 2888.740 kb on - strand, within MPMX20_02735at 2888.740 kb on - strand, within MPMX20_02735at 2888.753 kb on - strand, within MPMX20_02735at 2888.762 kb on + strand, within MPMX20_02735at 2888.762 kb on + strand, within MPMX20_02735at 2888.770 kb on - strand, within MPMX20_02735at 2888.775 kb on - strand, within MPMX20_02735at 2888.780 kb on + strand, within MPMX20_02735at 2888.780 kb on + strand, within MPMX20_02735at 2888.780 kb on + strand, within MPMX20_02735at 2888.780 kb on + strand, within MPMX20_02735at 2888.780 kb on + strand, within MPMX20_02735at 2888.781 kb on - strand, within MPMX20_02735at 2888.788 kb on - strand, within MPMX20_02735at 2888.874 kb on + strand, within MPMX20_02735at 2888.963 kb on - strand, within MPMX20_02735at 2888.972 kb on - strand, within MPMX20_02735at 2888.989 kb on - strand, within MPMX20_02735at 2889.081 kb on + strand, within MPMX20_02735at 2889.193 kb on + strand, within MPMX20_02735at 2889.251 kb on + strand, within MPMX20_02735at 2889.251 kb on + strand, within MPMX20_02735at 2889.252 kb on - strand, within MPMX20_02735at 2889.289 kb on + strand, within MPMX20_02735at 2889.289 kb on + strand, within MPMX20_02735at 2889.321 kb on - strand, within MPMX20_02735at 2889.347 kb on + strandat 2889.437 kb on + strandat 2889.437 kb on + strandat 2889.437 kb on + strandat 2889.445 kb on - strandat 2889.447 kb on + strandat 2889.447 kb on + strandat 2889.447 kb on + strandat 2889.447 kb on + strandat 2889.450 kb on - strandat 2889.452 kb on + strandat 2889.455 kb on - strandat 2889.455 kb on - strandat 2889.460 kb on - strandat 2889.487 kb on - strandat 2889.497 kb on - strandat 2889.533 kb on - strandat 2889.533 kb on - strandat 2889.572 kb on + strandat 2889.720 kb on - strand, within MPMX20_02736at 2889.738 kb on + strand, within MPMX20_02736at 2889.761 kb on + strand, within MPMX20_02736at 2889.827 kb on + strand, within MPMX20_02736at 2889.888 kb on + strand, within MPMX20_02736at 2889.934 kb on - strand, within MPMX20_02736at 2889.936 kb on + strand, within MPMX20_02736at 2890.135 kb on - strand, within MPMX20_02736at 2890.178 kb on - strand, within MPMX20_02736at 2890.206 kb on - strand, within MPMX20_02736at 2890.265 kb on + strand, within MPMX20_02736at 2890.281 kb on - strand, within MPMX20_02736at 2890.296 kb on + strand, within MPMX20_02736at 2890.414 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, Mixed culture; Bacillus subtilis TBS_102 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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2,887,120 + +1.8
2,887,128 - -0.2
2,887,158 + -2.6
2,887,171 + -1.3
2,887,171 + +0.7
2,887,194 - -1.3
2,887,205 - MPMX20_02734 0.10 -0.3
2,887,259 + MPMX20_02734 0.17 -0.5
2,887,283 + MPMX20_02734 0.20 +1.8
2,887,291 - MPMX20_02734 0.21 +0.3
2,887,300 + MPMX20_02734 0.22 +1.1
2,887,301 - MPMX20_02734 0.23 -0.3
2,887,301 - MPMX20_02734 0.23 -2.2
2,887,306 - MPMX20_02734 0.23 -0.3
2,887,335 - MPMX20_02734 0.27 -1.5
2,887,387 - MPMX20_02734 0.33 -1.0
2,887,391 + MPMX20_02734 0.34 +0.7
2,887,396 + MPMX20_02734 0.35 +0.7
2,887,399 - MPMX20_02734 0.35 -0.8
2,887,399 - MPMX20_02734 0.35 -0.0
2,887,399 - MPMX20_02734 0.35 -0.9
2,887,410 - MPMX20_02734 0.36 +0.2
2,887,418 - MPMX20_02734 0.37 +1.3
2,887,436 - MPMX20_02734 0.40 -0.8
2,887,478 + MPMX20_02734 0.45 +0.7
2,887,492 + MPMX20_02734 0.47 -1.7
2,887,493 + MPMX20_02734 0.47 +0.1
2,887,501 - MPMX20_02734 0.48 +0.3
2,887,551 + MPMX20_02734 0.54 -1.2
2,887,559 - MPMX20_02734 0.55 +0.7
2,887,564 - MPMX20_02734 0.56 -0.4
2,887,569 - MPMX20_02734 0.56 +0.1
2,887,603 - MPMX20_02734 0.61 -3.1
2,887,607 + MPMX20_02734 0.61 +0.7
2,887,622 - MPMX20_02734 0.63 -1.6
2,887,631 + MPMX20_02734 0.64 -1.4
2,887,732 + MPMX20_02734 0.77 +0.3
2,887,732 + MPMX20_02734 0.77 +1.7
2,887,732 + MPMX20_02734 0.77 +1.1
2,887,740 - MPMX20_02734 0.78 -1.3
2,887,740 - MPMX20_02734 0.78 +1.7
2,887,745 + MPMX20_02734 0.79 -0.9
2,887,745 + MPMX20_02734 0.79 +0.7
2,887,808 + MPMX20_02734 0.87 -1.2
2,887,831 + MPMX20_02734 0.90 -0.2
2,887,851 + +1.7
2,887,918 - -0.5
2,888,127 - -0.8
2,888,130 + -3.7
2,888,130 + -1.8
2,888,141 - +0.7
2,888,184 - -0.9
2,888,184 - +0.1
2,888,184 - -1.9
2,888,272 - MPMX20_02735 0.13 -0.2
2,888,353 + MPMX20_02735 0.19 +0.4
2,888,381 + MPMX20_02735 0.21 +1.1
2,888,457 - MPMX20_02735 0.27 +1.3
2,888,457 - MPMX20_02735 0.27 +1.1
2,888,457 - MPMX20_02735 0.27 -0.5
2,888,457 - MPMX20_02735 0.27 +0.6
2,888,470 + MPMX20_02735 0.28 -2.1
2,888,478 - MPMX20_02735 0.28 -0.5
2,888,558 + MPMX20_02735 0.34 +0.2
2,888,558 + MPMX20_02735 0.34 -0.8
2,888,558 + MPMX20_02735 0.34 +0.4
2,888,558 + MPMX20_02735 0.34 -0.3
2,888,583 - MPMX20_02735 0.36 -1.3
2,888,643 + MPMX20_02735 0.40 -0.2
2,888,696 + MPMX20_02735 0.44 +1.7
2,888,696 + MPMX20_02735 0.44 -0.5
2,888,704 - MPMX20_02735 0.45 +0.9
2,888,704 - MPMX20_02735 0.45 -3.6
2,888,704 - MPMX20_02735 0.45 -1.8
2,888,704 - MPMX20_02735 0.45 -0.0
2,888,704 - MPMX20_02735 0.45 -0.8
2,888,724 - MPMX20_02735 0.46 -0.2
2,888,733 - MPMX20_02735 0.47 +1.7
2,888,740 - MPMX20_02735 0.47 +1.7
2,888,740 - MPMX20_02735 0.47 +0.0
2,888,740 - MPMX20_02735 0.47 -1.3
2,888,740 - MPMX20_02735 0.47 -1.9
2,888,753 - MPMX20_02735 0.48 -0.5
2,888,762 + MPMX20_02735 0.49 +2.1
2,888,762 + MPMX20_02735 0.49 +0.3
2,888,770 - MPMX20_02735 0.49 -0.8
2,888,775 - MPMX20_02735 0.50 +5.7
2,888,780 + MPMX20_02735 0.50 -0.6
2,888,780 + MPMX20_02735 0.50 +1.1
2,888,780 + MPMX20_02735 0.50 -1.6
2,888,780 + MPMX20_02735 0.50 +0.5
2,888,780 + MPMX20_02735 0.50 +0.3
2,888,781 - MPMX20_02735 0.50 -0.2
2,888,788 - MPMX20_02735 0.51 -2.1
2,888,874 + MPMX20_02735 0.57 -0.9
2,888,963 - MPMX20_02735 0.63 -1.7
2,888,972 - MPMX20_02735 0.64 -0.2
2,888,989 - MPMX20_02735 0.65 -1.4
2,889,081 + MPMX20_02735 0.72 +0.2
2,889,193 + MPMX20_02735 0.80 -1.2
2,889,251 + MPMX20_02735 0.84 +1.7
2,889,251 + MPMX20_02735 0.84 +0.0
2,889,252 - MPMX20_02735 0.84 -0.5
2,889,289 + MPMX20_02735 0.87 +0.1
2,889,289 + MPMX20_02735 0.87 -1.9
2,889,321 - MPMX20_02735 0.89 -0.9
2,889,347 + -1.0
2,889,437 + +0.2
2,889,437 + -3.7
2,889,437 + -0.9
2,889,445 - -0.3
2,889,447 + +2.2
2,889,447 + -2.0
2,889,447 + -0.3
2,889,447 + +1.9
2,889,450 - +0.9
2,889,452 + -1.3
2,889,455 - -0.7
2,889,455 - -0.3
2,889,460 - -1.0
2,889,487 - -1.1
2,889,497 - -0.8
2,889,533 - +0.3
2,889,533 - -1.6
2,889,572 + -1.0
2,889,720 - MPMX20_02736 0.23 -1.4
2,889,738 + MPMX20_02736 0.25 -1.0
2,889,761 + MPMX20_02736 0.28 +1.7
2,889,827 + MPMX20_02736 0.35 +0.1
2,889,888 + MPMX20_02736 0.42 +3.2
2,889,934 - MPMX20_02736 0.48 -1.6
2,889,936 + MPMX20_02736 0.48 -0.7
2,890,135 - MPMX20_02736 0.70 +2.5
2,890,178 - MPMX20_02736 0.75 -2.5
2,890,206 - MPMX20_02736 0.78 +0.1
2,890,265 + MPMX20_02736 0.85 -0.5
2,890,281 - MPMX20_02736 0.87 -0.9
2,890,296 + MPMX20_02736 0.89 +0.2
2,890,414 + +1.1

Or see this region's nucleotide sequence