Experiment: M9 plate, Mixed culture; Bacillus subtilis TBS_102 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02734 and MPMX20_02735 are separated by 178 nucleotides MPMX20_02735 and MPMX20_02736 are separated by 48 nucleotides
MPMX20_02734: MPMX20_02734 - Transcriptional regulator KdgR, at 2,887,122 to 2,887,913
_02734
MPMX20_02735: MPMX20_02735 - Riboflavin transporter RibZ, at 2,888,092 to 2,889,465
_02735
MPMX20_02736: MPMX20_02736 - Protease HtpX, at 2,889,514 to 2,890,395
_02736
Position (kb)
2888
2889
2890 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 2887.120 kb on + strand at 2887.128 kb on - strand at 2887.158 kb on + strand at 2887.171 kb on + strand at 2887.171 kb on + strand at 2887.194 kb on - strand at 2887.205 kb on - strand, within MPMX20_02734 at 2887.259 kb on + strand, within MPMX20_02734 at 2887.283 kb on + strand, within MPMX20_02734 at 2887.291 kb on - strand, within MPMX20_02734 at 2887.300 kb on + strand, within MPMX20_02734 at 2887.301 kb on - strand, within MPMX20_02734 at 2887.301 kb on - strand, within MPMX20_02734 at 2887.306 kb on - strand, within MPMX20_02734 at 2887.335 kb on - strand, within MPMX20_02734 at 2887.387 kb on - strand, within MPMX20_02734 at 2887.391 kb on + strand, within MPMX20_02734 at 2887.396 kb on + strand, within MPMX20_02734 at 2887.399 kb on - strand, within MPMX20_02734 at 2887.399 kb on - strand, within MPMX20_02734 at 2887.399 kb on - strand, within MPMX20_02734 at 2887.410 kb on - strand, within MPMX20_02734 at 2887.418 kb on - strand, within MPMX20_02734 at 2887.436 kb on - strand, within MPMX20_02734 at 2887.478 kb on + strand, within MPMX20_02734 at 2887.492 kb on + strand, within MPMX20_02734 at 2887.493 kb on + strand, within MPMX20_02734 at 2887.501 kb on - strand, within MPMX20_02734 at 2887.551 kb on + strand, within MPMX20_02734 at 2887.559 kb on - strand, within MPMX20_02734 at 2887.564 kb on - strand, within MPMX20_02734 at 2887.569 kb on - strand, within MPMX20_02734 at 2887.603 kb on - strand, within MPMX20_02734 at 2887.607 kb on + strand, within MPMX20_02734 at 2887.622 kb on - strand, within MPMX20_02734 at 2887.631 kb on + strand, within MPMX20_02734 at 2887.732 kb on + strand, within MPMX20_02734 at 2887.732 kb on + strand, within MPMX20_02734 at 2887.732 kb on + strand, within MPMX20_02734 at 2887.740 kb on - strand, within MPMX20_02734 at 2887.740 kb on - strand, within MPMX20_02734 at 2887.745 kb on + strand, within MPMX20_02734 at 2887.745 kb on + strand, within MPMX20_02734 at 2887.808 kb on + strand, within MPMX20_02734 at 2887.831 kb on + strand, within MPMX20_02734 at 2887.851 kb on + strand at 2887.918 kb on - strand at 2888.127 kb on - strand at 2888.130 kb on + strand at 2888.130 kb on + strand at 2888.141 kb on - strand at 2888.184 kb on - strand at 2888.184 kb on - strand at 2888.184 kb on - strand at 2888.272 kb on - strand, within MPMX20_02735 at 2888.353 kb on + strand, within MPMX20_02735 at 2888.381 kb on + strand, within MPMX20_02735 at 2888.457 kb on - strand, within MPMX20_02735 at 2888.457 kb on - strand, within MPMX20_02735 at 2888.457 kb on - strand, within MPMX20_02735 at 2888.457 kb on - strand, within MPMX20_02735 at 2888.470 kb on + strand, within MPMX20_02735 at 2888.478 kb on - strand, within MPMX20_02735 at 2888.558 kb on + strand, within MPMX20_02735 at 2888.558 kb on + strand, within MPMX20_02735 at 2888.558 kb on + strand, within MPMX20_02735 at 2888.558 kb on + strand, within MPMX20_02735 at 2888.583 kb on - strand, within MPMX20_02735 at 2888.643 kb on + strand, within MPMX20_02735 at 2888.696 kb on + strand, within MPMX20_02735 at 2888.696 kb on + strand, within MPMX20_02735 at 2888.704 kb on - strand, within MPMX20_02735 at 2888.704 kb on - strand, within MPMX20_02735 at 2888.704 kb on - strand, within MPMX20_02735 at 2888.704 kb on - strand, within MPMX20_02735 at 2888.704 kb on - strand, within MPMX20_02735 at 2888.724 kb on - strand, within MPMX20_02735 at 2888.733 kb on - strand, within MPMX20_02735 at 2888.740 kb on - strand, within MPMX20_02735 at 2888.740 kb on - strand, within MPMX20_02735 at 2888.740 kb on - strand, within MPMX20_02735 at 2888.740 kb on - strand, within MPMX20_02735 at 2888.753 kb on - strand, within MPMX20_02735 at 2888.762 kb on + strand, within MPMX20_02735 at 2888.762 kb on + strand, within MPMX20_02735 at 2888.770 kb on - strand, within MPMX20_02735 at 2888.775 kb on - strand, within MPMX20_02735 at 2888.780 kb on + strand, within MPMX20_02735 at 2888.780 kb on + strand, within MPMX20_02735 at 2888.780 kb on + strand, within MPMX20_02735 at 2888.780 kb on + strand, within MPMX20_02735 at 2888.780 kb on + strand, within MPMX20_02735 at 2888.781 kb on - strand, within MPMX20_02735 at 2888.788 kb on - strand, within MPMX20_02735 at 2888.874 kb on + strand, within MPMX20_02735 at 2888.963 kb on - strand, within MPMX20_02735 at 2888.972 kb on - strand, within MPMX20_02735 at 2888.989 kb on - strand, within MPMX20_02735 at 2889.081 kb on + strand, within MPMX20_02735 at 2889.193 kb on + strand, within MPMX20_02735 at 2889.251 kb on + strand, within MPMX20_02735 at 2889.251 kb on + strand, within MPMX20_02735 at 2889.252 kb on - strand, within MPMX20_02735 at 2889.289 kb on + strand, within MPMX20_02735 at 2889.289 kb on + strand, within MPMX20_02735 at 2889.321 kb on - strand, within MPMX20_02735 at 2889.347 kb on + strand at 2889.437 kb on + strand at 2889.437 kb on + strand at 2889.437 kb on + strand at 2889.445 kb on - strand at 2889.447 kb on + strand at 2889.447 kb on + strand at 2889.447 kb on + strand at 2889.447 kb on + strand at 2889.450 kb on - strand at 2889.452 kb on + strand at 2889.455 kb on - strand at 2889.455 kb on - strand at 2889.460 kb on - strand at 2889.487 kb on - strand at 2889.497 kb on - strand at 2889.533 kb on - strand at 2889.533 kb on - strand at 2889.572 kb on + strand at 2889.720 kb on - strand, within MPMX20_02736 at 2889.738 kb on + strand, within MPMX20_02736 at 2889.761 kb on + strand, within MPMX20_02736 at 2889.827 kb on + strand, within MPMX20_02736 at 2889.888 kb on + strand, within MPMX20_02736 at 2889.934 kb on - strand, within MPMX20_02736 at 2889.936 kb on + strand, within MPMX20_02736 at 2890.135 kb on - strand, within MPMX20_02736 at 2890.178 kb on - strand, within MPMX20_02736 at 2890.206 kb on - strand, within MPMX20_02736 at 2890.265 kb on + strand, within MPMX20_02736 at 2890.281 kb on - strand, within MPMX20_02736 at 2890.296 kb on + strand, within MPMX20_02736 at 2890.414 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, Mixed culture; Bacillus subtilis TBS_102 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 2,887,120 + +1.8 2,887,128 - -0.2 2,887,158 + -2.6 2,887,171 + -1.3 2,887,171 + +0.7 2,887,194 - -1.3 2,887,205 - MPMX20_02734 0.10 -0.3 2,887,259 + MPMX20_02734 0.17 -0.5 2,887,283 + MPMX20_02734 0.20 +1.8 2,887,291 - MPMX20_02734 0.21 +0.3 2,887,300 + MPMX20_02734 0.22 +1.1 2,887,301 - MPMX20_02734 0.23 -0.3 2,887,301 - MPMX20_02734 0.23 -2.2 2,887,306 - MPMX20_02734 0.23 -0.3 2,887,335 - MPMX20_02734 0.27 -1.5 2,887,387 - MPMX20_02734 0.33 -1.0 2,887,391 + MPMX20_02734 0.34 +0.7 2,887,396 + MPMX20_02734 0.35 +0.7 2,887,399 - MPMX20_02734 0.35 -0.8 2,887,399 - MPMX20_02734 0.35 -0.0 2,887,399 - MPMX20_02734 0.35 -0.9 2,887,410 - MPMX20_02734 0.36 +0.2 2,887,418 - MPMX20_02734 0.37 +1.3 2,887,436 - MPMX20_02734 0.40 -0.8 2,887,478 + MPMX20_02734 0.45 +0.7 2,887,492 + MPMX20_02734 0.47 -1.7 2,887,493 + MPMX20_02734 0.47 +0.1 2,887,501 - MPMX20_02734 0.48 +0.3 2,887,551 + MPMX20_02734 0.54 -1.2 2,887,559 - MPMX20_02734 0.55 +0.7 2,887,564 - MPMX20_02734 0.56 -0.4 2,887,569 - MPMX20_02734 0.56 +0.1 2,887,603 - MPMX20_02734 0.61 -3.1 2,887,607 + MPMX20_02734 0.61 +0.7 2,887,622 - MPMX20_02734 0.63 -1.6 2,887,631 + MPMX20_02734 0.64 -1.4 2,887,732 + MPMX20_02734 0.77 +0.3 2,887,732 + MPMX20_02734 0.77 +1.7 2,887,732 + MPMX20_02734 0.77 +1.1 2,887,740 - MPMX20_02734 0.78 -1.3 2,887,740 - MPMX20_02734 0.78 +1.7 2,887,745 + MPMX20_02734 0.79 -0.9 2,887,745 + MPMX20_02734 0.79 +0.7 2,887,808 + MPMX20_02734 0.87 -1.2 2,887,831 + MPMX20_02734 0.90 -0.2 2,887,851 + +1.7 2,887,918 - -0.5 2,888,127 - -0.8 2,888,130 + -3.7 2,888,130 + -1.8 2,888,141 - +0.7 2,888,184 - -0.9 2,888,184 - +0.1 2,888,184 - -1.9 2,888,272 - MPMX20_02735 0.13 -0.2 2,888,353 + MPMX20_02735 0.19 +0.4 2,888,381 + MPMX20_02735 0.21 +1.1 2,888,457 - MPMX20_02735 0.27 +1.3 2,888,457 - MPMX20_02735 0.27 +1.1 2,888,457 - MPMX20_02735 0.27 -0.5 2,888,457 - MPMX20_02735 0.27 +0.6 2,888,470 + MPMX20_02735 0.28 -2.1 2,888,478 - MPMX20_02735 0.28 -0.5 2,888,558 + MPMX20_02735 0.34 +0.2 2,888,558 + MPMX20_02735 0.34 -0.8 2,888,558 + MPMX20_02735 0.34 +0.4 2,888,558 + MPMX20_02735 0.34 -0.3 2,888,583 - MPMX20_02735 0.36 -1.3 2,888,643 + MPMX20_02735 0.40 -0.2 2,888,696 + MPMX20_02735 0.44 +1.7 2,888,696 + MPMX20_02735 0.44 -0.5 2,888,704 - MPMX20_02735 0.45 +0.9 2,888,704 - MPMX20_02735 0.45 -3.6 2,888,704 - MPMX20_02735 0.45 -1.8 2,888,704 - MPMX20_02735 0.45 -0.0 2,888,704 - MPMX20_02735 0.45 -0.8 2,888,724 - MPMX20_02735 0.46 -0.2 2,888,733 - MPMX20_02735 0.47 +1.7 2,888,740 - MPMX20_02735 0.47 +1.7 2,888,740 - MPMX20_02735 0.47 +0.0 2,888,740 - MPMX20_02735 0.47 -1.3 2,888,740 - MPMX20_02735 0.47 -1.9 2,888,753 - MPMX20_02735 0.48 -0.5 2,888,762 + MPMX20_02735 0.49 +2.1 2,888,762 + MPMX20_02735 0.49 +0.3 2,888,770 - MPMX20_02735 0.49 -0.8 2,888,775 - MPMX20_02735 0.50 +5.7 2,888,780 + MPMX20_02735 0.50 -0.6 2,888,780 + MPMX20_02735 0.50 +1.1 2,888,780 + MPMX20_02735 0.50 -1.6 2,888,780 + MPMX20_02735 0.50 +0.5 2,888,780 + MPMX20_02735 0.50 +0.3 2,888,781 - MPMX20_02735 0.50 -0.2 2,888,788 - MPMX20_02735 0.51 -2.1 2,888,874 + MPMX20_02735 0.57 -0.9 2,888,963 - MPMX20_02735 0.63 -1.7 2,888,972 - MPMX20_02735 0.64 -0.2 2,888,989 - MPMX20_02735 0.65 -1.4 2,889,081 + MPMX20_02735 0.72 +0.2 2,889,193 + MPMX20_02735 0.80 -1.2 2,889,251 + MPMX20_02735 0.84 +1.7 2,889,251 + MPMX20_02735 0.84 +0.0 2,889,252 - MPMX20_02735 0.84 -0.5 2,889,289 + MPMX20_02735 0.87 +0.1 2,889,289 + MPMX20_02735 0.87 -1.9 2,889,321 - MPMX20_02735 0.89 -0.9 2,889,347 + -1.0 2,889,437 + +0.2 2,889,437 + -3.7 2,889,437 + -0.9 2,889,445 - -0.3 2,889,447 + +2.2 2,889,447 + -2.0 2,889,447 + -0.3 2,889,447 + +1.9 2,889,450 - +0.9 2,889,452 + -1.3 2,889,455 - -0.7 2,889,455 - -0.3 2,889,460 - -1.0 2,889,487 - -1.1 2,889,497 - -0.8 2,889,533 - +0.3 2,889,533 - -1.6 2,889,572 + -1.0 2,889,720 - MPMX20_02736 0.23 -1.4 2,889,738 + MPMX20_02736 0.25 -1.0 2,889,761 + MPMX20_02736 0.28 +1.7 2,889,827 + MPMX20_02736 0.35 +0.1 2,889,888 + MPMX20_02736 0.42 +3.2 2,889,934 - MPMX20_02736 0.48 -1.6 2,889,936 + MPMX20_02736 0.48 -0.7 2,890,135 - MPMX20_02736 0.70 +2.5 2,890,178 - MPMX20_02736 0.75 -2.5 2,890,206 - MPMX20_02736 0.78 +0.1 2,890,265 + MPMX20_02736 0.85 -0.5 2,890,281 - MPMX20_02736 0.87 -0.9 2,890,296 + MPMX20_02736 0.89 +0.2 2,890,414 + +1.1
Or see this region's nucleotide sequence