Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01887

Experiment: M9 plate, Mixed culture; Bacillus subtilis TBS_102 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01885 and MPMX20_01886 are separated by 93 nucleotidesMPMX20_01886 and MPMX20_01887 are separated by 130 nucleotidesMPMX20_01887 and MPMX20_01888 are separated by 148 nucleotidesMPMX20_01888 and MPMX20_01889 are separated by 36 nucleotides MPMX20_01885: MPMX20_01885 - Inner membrane protein YdjM, at 1,978,882 to 1,979,472 _01885 MPMX20_01886: MPMX20_01886 - 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase, at 1,979,566 to 1,980,327 _01886 MPMX20_01887: MPMX20_01887 - Hexitol phosphatase B, at 1,980,458 to 1,981,129 _01887 MPMX20_01888: MPMX20_01888 - hypothetical protein, at 1,981,278 to 1,981,814 _01888 MPMX20_01889: MPMX20_01889 - putative ketoamine kinase, at 1,981,851 to 1,982,711 _01889 Position (kb) 1980 1981 1982Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1979.512 kb on - strandat 1979.598 kb on + strandat 1979.606 kb on - strandat 1979.625 kb on - strandat 1979.789 kb on - strand, within MPMX20_01886at 1979.850 kb on + strand, within MPMX20_01886at 1979.850 kb on + strand, within MPMX20_01886at 1979.852 kb on + strand, within MPMX20_01886at 1979.860 kb on - strand, within MPMX20_01886at 1979.860 kb on - strand, within MPMX20_01886at 1979.926 kb on - strand, within MPMX20_01886at 1979.926 kb on - strand, within MPMX20_01886at 1979.985 kb on + strand, within MPMX20_01886at 1980.002 kb on - strand, within MPMX20_01886at 1980.007 kb on - strand, within MPMX20_01886at 1980.019 kb on + strand, within MPMX20_01886at 1980.037 kb on - strand, within MPMX20_01886at 1980.097 kb on + strand, within MPMX20_01886at 1980.224 kb on + strand, within MPMX20_01886at 1980.247 kb on + strand, within MPMX20_01886at 1980.306 kb on + strandat 1980.306 kb on + strandat 1980.314 kb on - strandat 1980.333 kb on + strandat 1980.333 kb on + strandat 1980.368 kb on + strandat 1980.442 kb on + strandat 1980.498 kb on + strandat 1980.508 kb on - strandat 1980.542 kb on + strand, within MPMX20_01887at 1980.544 kb on - strand, within MPMX20_01887at 1980.624 kb on + strand, within MPMX20_01887at 1980.627 kb on + strand, within MPMX20_01887at 1980.635 kb on - strand, within MPMX20_01887at 1980.635 kb on - strand, within MPMX20_01887at 1980.637 kb on + strand, within MPMX20_01887at 1980.642 kb on + strand, within MPMX20_01887at 1980.642 kb on + strand, within MPMX20_01887at 1980.645 kb on - strand, within MPMX20_01887at 1980.666 kb on + strand, within MPMX20_01887at 1980.674 kb on - strand, within MPMX20_01887at 1980.674 kb on - strand, within MPMX20_01887at 1980.739 kb on + strand, within MPMX20_01887at 1980.799 kb on + strand, within MPMX20_01887at 1980.813 kb on + strand, within MPMX20_01887at 1980.813 kb on + strand, within MPMX20_01887at 1980.813 kb on + strand, within MPMX20_01887at 1980.813 kb on + strand, within MPMX20_01887at 1980.813 kb on + strand, within MPMX20_01887at 1980.813 kb on + strand, within MPMX20_01887at 1980.814 kb on - strand, within MPMX20_01887at 1980.814 kb on - strand, within MPMX20_01887at 1980.821 kb on - strand, within MPMX20_01887at 1980.821 kb on - strand, within MPMX20_01887at 1980.821 kb on - strand, within MPMX20_01887at 1980.872 kb on - strand, within MPMX20_01887at 1980.929 kb on - strand, within MPMX20_01887at 1980.929 kb on - strand, within MPMX20_01887at 1980.976 kb on + strand, within MPMX20_01887at 1980.976 kb on + strand, within MPMX20_01887at 1980.984 kb on - strand, within MPMX20_01887at 1981.015 kb on - strand, within MPMX20_01887at 1981.130 kb on - strandat 1981.139 kb on + strandat 1981.140 kb on + strandat 1981.143 kb on + strandat 1981.151 kb on + strandat 1981.151 kb on + strandat 1981.153 kb on + strandat 1981.159 kb on - strandat 1981.201 kb on + strandat 1981.201 kb on + strandat 1981.209 kb on - strandat 1981.244 kb on + strandat 1981.367 kb on - strand, within MPMX20_01888at 1981.554 kb on + strand, within MPMX20_01888at 1981.583 kb on + strand, within MPMX20_01888at 1981.591 kb on - strand, within MPMX20_01888at 1981.596 kb on + strand, within MPMX20_01888at 1981.630 kb on + strand, within MPMX20_01888at 1981.630 kb on - strand, within MPMX20_01888at 1981.674 kb on + strand, within MPMX20_01888at 1981.674 kb on + strand, within MPMX20_01888at 1981.707 kb on + strand, within MPMX20_01888at 1981.710 kb on - strand, within MPMX20_01888at 1981.816 kb on - strandat 1981.849 kb on - strandat 1981.898 kb on - strandat 1981.923 kb on + strandat 1981.923 kb on + strandat 1981.923 kb on + strandat 1981.923 kb on + strandat 1981.933 kb on + strandat 1981.933 kb on + strandat 1981.933 kb on + strandat 1981.941 kb on - strand, within MPMX20_01889at 1981.990 kb on + strand, within MPMX20_01889at 1981.998 kb on - strand, within MPMX20_01889at 1982.065 kb on - strand, within MPMX20_01889at 1982.128 kb on - strand, within MPMX20_01889

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, Mixed culture; Bacillus subtilis TBS_102 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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1,979,512 - -1.6
1,979,598 + -0.8
1,979,606 - -0.1
1,979,625 - -3.5
1,979,789 - MPMX20_01886 0.29 -0.5
1,979,850 + MPMX20_01886 0.37 +1.3
1,979,850 + MPMX20_01886 0.37 -2.8
1,979,852 + MPMX20_01886 0.38 +0.1
1,979,860 - MPMX20_01886 0.39 -0.5
1,979,860 - MPMX20_01886 0.39 -1.4
1,979,926 - MPMX20_01886 0.47 -0.2
1,979,926 - MPMX20_01886 0.47 -0.7
1,979,985 + MPMX20_01886 0.55 +0.0
1,980,002 - MPMX20_01886 0.57 +0.3
1,980,007 - MPMX20_01886 0.58 +0.7
1,980,019 + MPMX20_01886 0.59 +2.7
1,980,037 - MPMX20_01886 0.62 -1.5
1,980,097 + MPMX20_01886 0.70 +0.8
1,980,224 + MPMX20_01886 0.86 +0.7
1,980,247 + MPMX20_01886 0.89 +1.7
1,980,306 + -0.2
1,980,306 + -0.9
1,980,314 - -0.9
1,980,333 + -2.0
1,980,333 + -0.0
1,980,368 + +1.3
1,980,442 + -1.6
1,980,498 + -2.7
1,980,508 - -0.1
1,980,542 + MPMX20_01887 0.12 -1.0
1,980,544 - MPMX20_01887 0.13 -1.2
1,980,624 + MPMX20_01887 0.25 -0.5
1,980,627 + MPMX20_01887 0.25 -1.7
1,980,635 - MPMX20_01887 0.26 -1.3
1,980,635 - MPMX20_01887 0.26 -2.0
1,980,637 + MPMX20_01887 0.27 -0.9
1,980,642 + MPMX20_01887 0.27 +1.2
1,980,642 + MPMX20_01887 0.27 -0.7
1,980,645 - MPMX20_01887 0.28 -1.0
1,980,666 + MPMX20_01887 0.31 -2.9
1,980,674 - MPMX20_01887 0.32 -0.0
1,980,674 - MPMX20_01887 0.32 -1.0
1,980,739 + MPMX20_01887 0.42 -0.7
1,980,799 + MPMX20_01887 0.51 -2.7
1,980,813 + MPMX20_01887 0.53 +1.1
1,980,813 + MPMX20_01887 0.53 +0.1
1,980,813 + MPMX20_01887 0.53 -0.5
1,980,813 + MPMX20_01887 0.53 +1.7
1,980,813 + MPMX20_01887 0.53 +0.7
1,980,813 + MPMX20_01887 0.53 -1.3
1,980,814 - MPMX20_01887 0.53 -1.5
1,980,814 - MPMX20_01887 0.53 -0.7
1,980,821 - MPMX20_01887 0.54 +1.9
1,980,821 - MPMX20_01887 0.54 -0.5
1,980,821 - MPMX20_01887 0.54 -0.3
1,980,872 - MPMX20_01887 0.62 +2.7
1,980,929 - MPMX20_01887 0.70 -1.1
1,980,929 - MPMX20_01887 0.70 +1.1
1,980,976 + MPMX20_01887 0.77 +1.7
1,980,976 + MPMX20_01887 0.77 +1.5
1,980,984 - MPMX20_01887 0.78 +0.3
1,981,015 - MPMX20_01887 0.83 -1.3
1,981,130 - -1.2
1,981,139 + +0.3
1,981,140 + +0.4
1,981,143 + +0.3
1,981,151 + -2.0
1,981,151 + -0.3
1,981,153 + -0.7
1,981,159 - +0.4
1,981,201 + +1.1
1,981,201 + +0.1
1,981,209 - -0.2
1,981,244 + -0.2
1,981,367 - MPMX20_01888 0.17 +0.7
1,981,554 + MPMX20_01888 0.51 -2.1
1,981,583 + MPMX20_01888 0.57 -2.0
1,981,591 - MPMX20_01888 0.58 +1.5
1,981,596 + MPMX20_01888 0.59 -0.7
1,981,630 + MPMX20_01888 0.66 -0.5
1,981,630 - MPMX20_01888 0.66 +2.8
1,981,674 + MPMX20_01888 0.74 +0.0
1,981,674 + MPMX20_01888 0.74 -0.0
1,981,707 + MPMX20_01888 0.80 -1.0
1,981,710 - MPMX20_01888 0.80 +0.6
1,981,816 - -0.8
1,981,849 - -0.8
1,981,898 - +1.2
1,981,923 + +0.5
1,981,923 + +2.7
1,981,923 + +0.4
1,981,923 + -1.2
1,981,933 + +0.5
1,981,933 + +1.9
1,981,933 + +0.3
1,981,941 - MPMX20_01889 0.10 -2.8
1,981,990 + MPMX20_01889 0.16 -1.7
1,981,998 - MPMX20_01889 0.17 -1.5
1,982,065 - MPMX20_01889 0.25 -1.4
1,982,128 - MPMX20_01889 0.32 -0.3

Or see this region's nucleotide sequence