Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04003

Experiment: 1X LB plate, Mixed culture; Bacillus subtilis TBS_102 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04002 and MPMX20_04003 are separated by 117 nucleotidesMPMX20_04003 and MPMX20_04004 are separated by 344 nucleotides MPMX20_04002: MPMX20_04002 - Hexuronate transporter, at 4,200,974 to 4,202,272 _04002 MPMX20_04003: MPMX20_04003 - Putative L-lactate dehydrogenase operon regulatory protein, at 4,202,390 to 4,203,166 _04003 MPMX20_04004: MPMX20_04004 - Inner membrane protein YqjA, at 4,203,511 to 4,204,173 _04004 Position (kb) 4202 4203 4204Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4201.451 kb on + strand, within MPMX20_04002at 4201.456 kb on - strand, within MPMX20_04002at 4201.477 kb on - strand, within MPMX20_04002at 4201.495 kb on - strand, within MPMX20_04002at 4201.495 kb on - strand, within MPMX20_04002at 4201.495 kb on - strand, within MPMX20_04002at 4201.505 kb on + strand, within MPMX20_04002at 4201.563 kb on - strand, within MPMX20_04002at 4201.601 kb on + strand, within MPMX20_04002at 4201.603 kb on - strand, within MPMX20_04002at 4201.657 kb on + strand, within MPMX20_04002at 4201.657 kb on + strand, within MPMX20_04002at 4201.704 kb on - strand, within MPMX20_04002at 4201.742 kb on - strand, within MPMX20_04002at 4201.742 kb on - strand, within MPMX20_04002at 4201.749 kb on + strand, within MPMX20_04002at 4201.757 kb on - strand, within MPMX20_04002at 4201.757 kb on - strand, within MPMX20_04002at 4201.774 kb on + strand, within MPMX20_04002at 4201.809 kb on + strand, within MPMX20_04002at 4201.857 kb on + strand, within MPMX20_04002at 4201.859 kb on - strand, within MPMX20_04002at 4201.904 kb on + strand, within MPMX20_04002at 4201.904 kb on + strand, within MPMX20_04002at 4201.907 kb on - strand, within MPMX20_04002at 4201.907 kb on - strand, within MPMX20_04002at 4201.912 kb on - strand, within MPMX20_04002at 4201.912 kb on - strand, within MPMX20_04002at 4201.930 kb on - strand, within MPMX20_04002at 4201.936 kb on + strand, within MPMX20_04002at 4201.966 kb on + strand, within MPMX20_04002at 4201.966 kb on + strand, within MPMX20_04002at 4201.974 kb on - strand, within MPMX20_04002at 4201.974 kb on - strand, within MPMX20_04002at 4201.974 kb on - strand, within MPMX20_04002at 4201.994 kb on + strand, within MPMX20_04002at 4201.999 kb on + strand, within MPMX20_04002at 4202.022 kb on + strand, within MPMX20_04002at 4202.030 kb on - strand, within MPMX20_04002at 4202.141 kb on - strand, within MPMX20_04002at 4202.169 kb on + strandat 4202.177 kb on - strandat 4202.192 kb on - strandat 4202.199 kb on + strandat 4202.204 kb on - strandat 4202.286 kb on - strandat 4202.286 kb on - strandat 4202.367 kb on + strandat 4202.367 kb on + strandat 4202.367 kb on + strandat 4202.367 kb on + strandat 4202.375 kb on - strandat 4202.375 kb on - strandat 4202.377 kb on + strandat 4202.385 kb on - strandat 4202.385 kb on - strandat 4202.466 kb on + strandat 4202.468 kb on - strand, within MPMX20_04003at 4202.523 kb on + strand, within MPMX20_04003at 4202.525 kb on - strand, within MPMX20_04003at 4202.561 kb on + strand, within MPMX20_04003at 4202.596 kb on - strand, within MPMX20_04003at 4202.597 kb on - strand, within MPMX20_04003at 4202.626 kb on + strand, within MPMX20_04003at 4202.626 kb on - strand, within MPMX20_04003at 4202.678 kb on - strand, within MPMX20_04003at 4202.759 kb on - strand, within MPMX20_04003at 4202.844 kb on - strand, within MPMX20_04003at 4203.085 kb on + strand, within MPMX20_04003at 4203.142 kb on - strandat 4203.234 kb on + strandat 4203.263 kb on + strandat 4203.265 kb on + strandat 4203.316 kb on + strandat 4203.316 kb on + strandat 4203.391 kb on + strandat 4203.396 kb on + strandat 4203.399 kb on - strandat 4203.404 kb on - strandat 4203.404 kb on - strandat 4203.406 kb on + strandat 4203.414 kb on - strandat 4203.419 kb on - strandat 4203.547 kb on - strandat 4203.552 kb on + strandat 4203.573 kb on + strandat 4203.594 kb on + strand, within MPMX20_04004at 4203.658 kb on + strand, within MPMX20_04004at 4203.665 kb on + strand, within MPMX20_04004at 4203.673 kb on - strand, within MPMX20_04004at 4203.673 kb on - strand, within MPMX20_04004at 4203.756 kb on - strand, within MPMX20_04004at 4203.767 kb on + strand, within MPMX20_04004at 4203.767 kb on + strand, within MPMX20_04004at 4203.775 kb on - strand, within MPMX20_04004at 4203.794 kb on + strand, within MPMX20_04004at 4203.813 kb on - strand, within MPMX20_04004at 4203.818 kb on - strand, within MPMX20_04004at 4203.996 kb on + strand, within MPMX20_04004at 4203.999 kb on - strand, within MPMX20_04004at 4204.025 kb on + strand, within MPMX20_04004at 4204.031 kb on - strand, within MPMX20_04004at 4204.033 kb on - strand, within MPMX20_04004at 4204.069 kb on - strand, within MPMX20_04004at 4204.072 kb on + strand, within MPMX20_04004at 4204.090 kb on - strand, within MPMX20_04004at 4204.090 kb on - strand, within MPMX20_04004

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, Mixed culture; Bacillus subtilis TBS_102 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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4,201,451 + MPMX20_04002 0.37 +0.2
4,201,456 - MPMX20_04002 0.37 +0.0
4,201,477 - MPMX20_04002 0.39 -0.7
4,201,495 - MPMX20_04002 0.40 +0.3
4,201,495 - MPMX20_04002 0.40 -1.2
4,201,495 - MPMX20_04002 0.40 +0.7
4,201,505 + MPMX20_04002 0.41 -1.2
4,201,563 - MPMX20_04002 0.45 -1.4
4,201,601 + MPMX20_04002 0.48 +0.6
4,201,603 - MPMX20_04002 0.48 -0.8
4,201,657 + MPMX20_04002 0.53 +0.8
4,201,657 + MPMX20_04002 0.53 +0.5
4,201,704 - MPMX20_04002 0.56 +0.5
4,201,742 - MPMX20_04002 0.59 -0.1
4,201,742 - MPMX20_04002 0.59 +1.8
4,201,749 + MPMX20_04002 0.60 -1.6
4,201,757 - MPMX20_04002 0.60 +0.3
4,201,757 - MPMX20_04002 0.60 +1.7
4,201,774 + MPMX20_04002 0.62 -1.4
4,201,809 + MPMX20_04002 0.64 -0.3
4,201,857 + MPMX20_04002 0.68 +0.9
4,201,859 - MPMX20_04002 0.68 -0.1
4,201,904 + MPMX20_04002 0.72 +2.5
4,201,904 + MPMX20_04002 0.72 +0.3
4,201,907 - MPMX20_04002 0.72 -1.2
4,201,907 - MPMX20_04002 0.72 +0.9
4,201,912 - MPMX20_04002 0.72 -2.0
4,201,912 - MPMX20_04002 0.72 -0.3
4,201,930 - MPMX20_04002 0.74 -0.7
4,201,936 + MPMX20_04002 0.74 +1.2
4,201,966 + MPMX20_04002 0.76 +2.2
4,201,966 + MPMX20_04002 0.76 +0.9
4,201,974 - MPMX20_04002 0.77 +1.2
4,201,974 - MPMX20_04002 0.77 +1.0
4,201,974 - MPMX20_04002 0.77 +0.5
4,201,994 + MPMX20_04002 0.79 +1.5
4,201,999 + MPMX20_04002 0.79 -0.9
4,202,022 + MPMX20_04002 0.81 +1.9
4,202,030 - MPMX20_04002 0.81 +0.5
4,202,141 - MPMX20_04002 0.90 -1.7
4,202,169 + -0.5
4,202,177 - -0.8
4,202,192 - -1.0
4,202,199 + -1.5
4,202,204 - +1.2
4,202,286 - -0.7
4,202,286 - -3.3
4,202,367 + -2.8
4,202,367 + -0.1
4,202,367 + +1.7
4,202,367 + -0.9
4,202,375 - -3.1
4,202,375 - +0.5
4,202,377 + -1.0
4,202,385 - -0.1
4,202,385 - +1.2
4,202,466 + +0.4
4,202,468 - MPMX20_04003 0.10 +0.5
4,202,523 + MPMX20_04003 0.17 -3.7
4,202,525 - MPMX20_04003 0.17 -0.2
4,202,561 + MPMX20_04003 0.22 +2.5
4,202,596 - MPMX20_04003 0.27 -1.5
4,202,597 - MPMX20_04003 0.27 -0.8
4,202,626 + MPMX20_04003 0.30 -0.8
4,202,626 - MPMX20_04003 0.30 -2.9
4,202,678 - MPMX20_04003 0.37 +0.2
4,202,759 - MPMX20_04003 0.47 -2.6
4,202,844 - MPMX20_04003 0.58 -0.8
4,203,085 + MPMX20_04003 0.89 +2.5
4,203,142 - +0.5
4,203,234 + -0.4
4,203,263 + +0.9
4,203,265 + -1.1
4,203,316 + +0.5
4,203,316 + +0.2
4,203,391 + +0.1
4,203,396 + -0.0
4,203,399 - -0.3
4,203,404 - +0.3
4,203,404 - -1.1
4,203,406 + -0.1
4,203,414 - -0.7
4,203,419 - +0.7
4,203,547 - -0.3
4,203,552 + +2.5
4,203,573 + -1.3
4,203,594 + MPMX20_04004 0.13 -0.5
4,203,658 + MPMX20_04004 0.22 +0.9
4,203,665 + MPMX20_04004 0.23 -1.2
4,203,673 - MPMX20_04004 0.24 -1.3
4,203,673 - MPMX20_04004 0.24 -1.5
4,203,756 - MPMX20_04004 0.37 -1.1
4,203,767 + MPMX20_04004 0.39 -1.4
4,203,767 + MPMX20_04004 0.39 -1.3
4,203,775 - MPMX20_04004 0.40 -2.0
4,203,794 + MPMX20_04004 0.43 +0.5
4,203,813 - MPMX20_04004 0.46 -0.1
4,203,818 - MPMX20_04004 0.46 -2.6
4,203,996 + MPMX20_04004 0.73 -0.1
4,203,999 - MPMX20_04004 0.74 -2.1
4,204,025 + MPMX20_04004 0.78 -2.6
4,204,031 - MPMX20_04004 0.78 +0.2
4,204,033 - MPMX20_04004 0.79 -1.4
4,204,069 - MPMX20_04004 0.84 -1.1
4,204,072 + MPMX20_04004 0.85 -0.5
4,204,090 - MPMX20_04004 0.87 +0.2
4,204,090 - MPMX20_04004 0.87 +1.5

Or see this region's nucleotide sequence