Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03607

Experiment: TSB plate, Mixed culture; Bacillus pumilus TBS_099 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03606 and MPMX20_03607 are separated by 15 nucleotidesMPMX20_03607 and MPMX20_03608 are separated by 1 nucleotides MPMX20_03606: MPMX20_03606 - Formate hydrogenlyase subunit 5, at 3,795,688 to 3,797,397 _03606 MPMX20_03607: MPMX20_03607 - Formate hydrogenlyase subunit 4, at 3,797,413 to 3,798,336 _03607 MPMX20_03608: MPMX20_03608 - Hydrogenase-4 component B, at 3,798,338 to 3,800,152 _03608 Position (kb) 3797 3798 3799Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 3796.413 kb on + strand, within MPMX20_03606at 3796.413 kb on + strand, within MPMX20_03606at 3796.413 kb on + strand, within MPMX20_03606at 3796.413 kb on + strand, within MPMX20_03606at 3796.413 kb on + strand, within MPMX20_03606at 3796.413 kb on + strand, within MPMX20_03606at 3796.533 kb on - strand, within MPMX20_03606at 3796.593 kb on - strand, within MPMX20_03606at 3796.642 kb on - strand, within MPMX20_03606at 3796.673 kb on + strand, within MPMX20_03606at 3796.751 kb on + strand, within MPMX20_03606at 3796.759 kb on - strand, within MPMX20_03606at 3796.821 kb on + strand, within MPMX20_03606at 3796.886 kb on - strand, within MPMX20_03606at 3796.886 kb on - strand, within MPMX20_03606at 3796.958 kb on + strand, within MPMX20_03606at 3796.959 kb on + strand, within MPMX20_03606at 3796.965 kb on - strand, within MPMX20_03606at 3796.965 kb on - strand, within MPMX20_03606at 3796.971 kb on - strand, within MPMX20_03606at 3797.046 kb on + strand, within MPMX20_03606at 3797.054 kb on - strand, within MPMX20_03606at 3797.069 kb on + strand, within MPMX20_03606at 3797.090 kb on - strand, within MPMX20_03606at 3797.138 kb on - strand, within MPMX20_03606at 3797.204 kb on - strand, within MPMX20_03606at 3797.304 kb on + strandat 3797.315 kb on + strandat 3797.333 kb on - strandat 3797.348 kb on + strandat 3797.353 kb on + strandat 3797.356 kb on - strandat 3797.386 kb on - strandat 3797.403 kb on - strandat 3797.499 kb on + strandat 3797.546 kb on + strand, within MPMX20_03607at 3797.582 kb on - strand, within MPMX20_03607at 3797.635 kb on + strand, within MPMX20_03607at 3797.635 kb on + strand, within MPMX20_03607at 3797.663 kb on - strand, within MPMX20_03607at 3797.689 kb on + strand, within MPMX20_03607at 3797.690 kb on - strand, within MPMX20_03607at 3797.696 kb on + strand, within MPMX20_03607at 3797.725 kb on - strand, within MPMX20_03607at 3797.747 kb on + strand, within MPMX20_03607at 3797.812 kb on + strand, within MPMX20_03607at 3797.827 kb on + strand, within MPMX20_03607at 3797.835 kb on - strand, within MPMX20_03607at 3797.847 kb on - strand, within MPMX20_03607at 3797.847 kb on - strand, within MPMX20_03607at 3797.847 kb on - strand, within MPMX20_03607at 3797.872 kb on + strand, within MPMX20_03607at 3797.874 kb on - strand, within MPMX20_03607at 3797.874 kb on - strand, within MPMX20_03607at 3798.114 kb on - strand, within MPMX20_03607at 3798.124 kb on - strand, within MPMX20_03607at 3798.190 kb on - strand, within MPMX20_03607at 3798.209 kb on - strand, within MPMX20_03607at 3798.219 kb on - strand, within MPMX20_03607at 3798.222 kb on + strand, within MPMX20_03607at 3798.222 kb on + strand, within MPMX20_03607at 3798.320 kb on + strandat 3798.396 kb on - strandat 3798.418 kb on - strandat 3798.451 kb on + strandat 3798.530 kb on - strand, within MPMX20_03608at 3798.605 kb on - strand, within MPMX20_03608at 3798.708 kb on + strand, within MPMX20_03608at 3798.708 kb on + strand, within MPMX20_03608at 3798.716 kb on - strand, within MPMX20_03608at 3798.764 kb on - strand, within MPMX20_03608at 3798.769 kb on - strand, within MPMX20_03608at 3798.769 kb on - strand, within MPMX20_03608at 3798.781 kb on + strand, within MPMX20_03608at 3798.791 kb on + strand, within MPMX20_03608at 3798.836 kb on - strand, within MPMX20_03608at 3798.836 kb on - strand, within MPMX20_03608at 3798.858 kb on + strand, within MPMX20_03608at 3798.859 kb on - strand, within MPMX20_03608at 3798.863 kb on + strand, within MPMX20_03608at 3798.960 kb on - strand, within MPMX20_03608at 3799.163 kb on - strand, within MPMX20_03608at 3799.165 kb on + strand, within MPMX20_03608at 3799.183 kb on + strand, within MPMX20_03608at 3799.191 kb on - strand, within MPMX20_03608at 3799.206 kb on + strand, within MPMX20_03608at 3799.231 kb on + strand, within MPMX20_03608at 3799.254 kb on - strand, within MPMX20_03608at 3799.320 kb on - strand, within MPMX20_03608at 3799.324 kb on + strand, within MPMX20_03608

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, Mixed culture; Bacillus pumilus TBS_099 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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3,796,413 + MPMX20_03606 0.42 -1.8
3,796,413 + MPMX20_03606 0.42 +0.0
3,796,413 + MPMX20_03606 0.42 +1.4
3,796,413 + MPMX20_03606 0.42 +1.3
3,796,413 + MPMX20_03606 0.42 +1.3
3,796,413 + MPMX20_03606 0.42 -0.2
3,796,533 - MPMX20_03606 0.49 -0.1
3,796,593 - MPMX20_03606 0.53 -1.1
3,796,642 - MPMX20_03606 0.56 +1.6
3,796,673 + MPMX20_03606 0.58 -1.1
3,796,751 + MPMX20_03606 0.62 +0.6
3,796,759 - MPMX20_03606 0.63 +0.1
3,796,821 + MPMX20_03606 0.66 -0.2
3,796,886 - MPMX20_03606 0.70 -1.2
3,796,886 - MPMX20_03606 0.70 +0.3
3,796,958 + MPMX20_03606 0.74 -0.4
3,796,959 + MPMX20_03606 0.74 +0.4
3,796,965 - MPMX20_03606 0.75 +0.4
3,796,965 - MPMX20_03606 0.75 +0.0
3,796,971 - MPMX20_03606 0.75 -0.6
3,797,046 + MPMX20_03606 0.79 -0.0
3,797,054 - MPMX20_03606 0.80 +1.5
3,797,069 + MPMX20_03606 0.81 -0.9
3,797,090 - MPMX20_03606 0.82 -0.2
3,797,138 - MPMX20_03606 0.85 -1.0
3,797,204 - MPMX20_03606 0.89 +1.5
3,797,304 + -0.4
3,797,315 + -0.6
3,797,333 - -1.1
3,797,348 + +3.0
3,797,353 + +0.7
3,797,356 - -0.4
3,797,386 - -0.3
3,797,403 - +3.0
3,797,499 + +0.6
3,797,546 + MPMX20_03607 0.14 -2.3
3,797,582 - MPMX20_03607 0.18 -0.1
3,797,635 + MPMX20_03607 0.24 +6.1
3,797,635 + MPMX20_03607 0.24 -0.1
3,797,663 - MPMX20_03607 0.27 +0.2
3,797,689 + MPMX20_03607 0.30 -0.7
3,797,690 - MPMX20_03607 0.30 +4.1
3,797,696 + MPMX20_03607 0.31 +0.4
3,797,725 - MPMX20_03607 0.34 +0.8
3,797,747 + MPMX20_03607 0.36 +0.8
3,797,812 + MPMX20_03607 0.43 -2.0
3,797,827 + MPMX20_03607 0.45 +0.1
3,797,835 - MPMX20_03607 0.46 +0.5
3,797,847 - MPMX20_03607 0.47 -0.2
3,797,847 - MPMX20_03607 0.47 +1.3
3,797,847 - MPMX20_03607 0.47 -0.3
3,797,872 + MPMX20_03607 0.50 +0.0
3,797,874 - MPMX20_03607 0.50 +1.4
3,797,874 - MPMX20_03607 0.50 -1.1
3,798,114 - MPMX20_03607 0.76 -0.6
3,798,124 - MPMX20_03607 0.77 -1.4
3,798,190 - MPMX20_03607 0.84 -1.2
3,798,209 - MPMX20_03607 0.86 -0.4
3,798,219 - MPMX20_03607 0.87 -0.5
3,798,222 + MPMX20_03607 0.88 -0.1
3,798,222 + MPMX20_03607 0.88 +0.4
3,798,320 + -0.5
3,798,396 - -0.6
3,798,418 - -1.8
3,798,451 + +0.4
3,798,530 - MPMX20_03608 0.11 -0.6
3,798,605 - MPMX20_03608 0.15 +0.4
3,798,708 + MPMX20_03608 0.20 +0.6
3,798,708 + MPMX20_03608 0.20 -0.7
3,798,716 - MPMX20_03608 0.21 +0.2
3,798,764 - MPMX20_03608 0.23 +0.7
3,798,769 - MPMX20_03608 0.24 -0.0
3,798,769 - MPMX20_03608 0.24 +0.8
3,798,781 + MPMX20_03608 0.24 -0.1
3,798,791 + MPMX20_03608 0.25 -0.2
3,798,836 - MPMX20_03608 0.27 -0.4
3,798,836 - MPMX20_03608 0.27 -1.7
3,798,858 + MPMX20_03608 0.29 -0.9
3,798,859 - MPMX20_03608 0.29 +0.4
3,798,863 + MPMX20_03608 0.29 -1.9
3,798,960 - MPMX20_03608 0.34 -0.7
3,799,163 - MPMX20_03608 0.45 +2.0
3,799,165 + MPMX20_03608 0.46 +1.0
3,799,183 + MPMX20_03608 0.47 +0.5
3,799,191 - MPMX20_03608 0.47 +0.3
3,799,206 + MPMX20_03608 0.48 -0.6
3,799,231 + MPMX20_03608 0.49 +6.3
3,799,254 - MPMX20_03608 0.50 +0.2
3,799,320 - MPMX20_03608 0.54 +1.4
3,799,324 + MPMX20_03608 0.54 -0.4

Or see this region's nucleotide sequence