Experiment: TSB plate, Mixed culture; Bacillus pumilus TBS_099 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03606 and MPMX20_03607 are separated by 15 nucleotides MPMX20_03607 and MPMX20_03608 are separated by 1 nucleotides
MPMX20_03606: MPMX20_03606 - Formate hydrogenlyase subunit 5, at 3,795,688 to 3,797,397
_03606
MPMX20_03607: MPMX20_03607 - Formate hydrogenlyase subunit 4, at 3,797,413 to 3,798,336
_03607
MPMX20_03608: MPMX20_03608 - Hydrogenase-4 component B, at 3,798,338 to 3,800,152
_03608
Position (kb)
3797
3798
3799 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6 at 3796.413 kb on + strand, within MPMX20_03606 at 3796.413 kb on + strand, within MPMX20_03606 at 3796.413 kb on + strand, within MPMX20_03606 at 3796.413 kb on + strand, within MPMX20_03606 at 3796.413 kb on + strand, within MPMX20_03606 at 3796.413 kb on + strand, within MPMX20_03606 at 3796.533 kb on - strand, within MPMX20_03606 at 3796.593 kb on - strand, within MPMX20_03606 at 3796.642 kb on - strand, within MPMX20_03606 at 3796.673 kb on + strand, within MPMX20_03606 at 3796.751 kb on + strand, within MPMX20_03606 at 3796.759 kb on - strand, within MPMX20_03606 at 3796.821 kb on + strand, within MPMX20_03606 at 3796.886 kb on - strand, within MPMX20_03606 at 3796.886 kb on - strand, within MPMX20_03606 at 3796.958 kb on + strand, within MPMX20_03606 at 3796.959 kb on + strand, within MPMX20_03606 at 3796.965 kb on - strand, within MPMX20_03606 at 3796.965 kb on - strand, within MPMX20_03606 at 3796.971 kb on - strand, within MPMX20_03606 at 3797.046 kb on + strand, within MPMX20_03606 at 3797.054 kb on - strand, within MPMX20_03606 at 3797.069 kb on + strand, within MPMX20_03606 at 3797.090 kb on - strand, within MPMX20_03606 at 3797.138 kb on - strand, within MPMX20_03606 at 3797.204 kb on - strand, within MPMX20_03606 at 3797.304 kb on + strand at 3797.315 kb on + strand at 3797.333 kb on - strand at 3797.348 kb on + strand at 3797.353 kb on + strand at 3797.356 kb on - strand at 3797.386 kb on - strand at 3797.403 kb on - strand at 3797.499 kb on + strand at 3797.546 kb on + strand, within MPMX20_03607 at 3797.582 kb on - strand, within MPMX20_03607 at 3797.635 kb on + strand, within MPMX20_03607 at 3797.635 kb on + strand, within MPMX20_03607 at 3797.663 kb on - strand, within MPMX20_03607 at 3797.689 kb on + strand, within MPMX20_03607 at 3797.690 kb on - strand, within MPMX20_03607 at 3797.696 kb on + strand, within MPMX20_03607 at 3797.725 kb on - strand, within MPMX20_03607 at 3797.747 kb on + strand, within MPMX20_03607 at 3797.812 kb on + strand, within MPMX20_03607 at 3797.827 kb on + strand, within MPMX20_03607 at 3797.835 kb on - strand, within MPMX20_03607 at 3797.847 kb on - strand, within MPMX20_03607 at 3797.847 kb on - strand, within MPMX20_03607 at 3797.847 kb on - strand, within MPMX20_03607 at 3797.872 kb on + strand, within MPMX20_03607 at 3797.874 kb on - strand, within MPMX20_03607 at 3797.874 kb on - strand, within MPMX20_03607 at 3798.114 kb on - strand, within MPMX20_03607 at 3798.124 kb on - strand, within MPMX20_03607 at 3798.190 kb on - strand, within MPMX20_03607 at 3798.209 kb on - strand, within MPMX20_03607 at 3798.219 kb on - strand, within MPMX20_03607 at 3798.222 kb on + strand, within MPMX20_03607 at 3798.222 kb on + strand, within MPMX20_03607 at 3798.320 kb on + strand at 3798.396 kb on - strand at 3798.418 kb on - strand at 3798.451 kb on + strand at 3798.530 kb on - strand, within MPMX20_03608 at 3798.605 kb on - strand, within MPMX20_03608 at 3798.708 kb on + strand, within MPMX20_03608 at 3798.708 kb on + strand, within MPMX20_03608 at 3798.716 kb on - strand, within MPMX20_03608 at 3798.764 kb on - strand, within MPMX20_03608 at 3798.769 kb on - strand, within MPMX20_03608 at 3798.769 kb on - strand, within MPMX20_03608 at 3798.781 kb on + strand, within MPMX20_03608 at 3798.791 kb on + strand, within MPMX20_03608 at 3798.836 kb on - strand, within MPMX20_03608 at 3798.836 kb on - strand, within MPMX20_03608 at 3798.858 kb on + strand, within MPMX20_03608 at 3798.859 kb on - strand, within MPMX20_03608 at 3798.863 kb on + strand, within MPMX20_03608 at 3798.960 kb on - strand, within MPMX20_03608 at 3799.163 kb on - strand, within MPMX20_03608 at 3799.165 kb on + strand, within MPMX20_03608 at 3799.183 kb on + strand, within MPMX20_03608 at 3799.191 kb on - strand, within MPMX20_03608 at 3799.206 kb on + strand, within MPMX20_03608 at 3799.231 kb on + strand, within MPMX20_03608 at 3799.254 kb on - strand, within MPMX20_03608 at 3799.320 kb on - strand, within MPMX20_03608 at 3799.324 kb on + strand, within MPMX20_03608
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, Mixed culture; Bacillus pumilus TBS_099 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 3,796,413 + MPMX20_03606 0.42 -1.8 3,796,413 + MPMX20_03606 0.42 +0.0 3,796,413 + MPMX20_03606 0.42 +1.4 3,796,413 + MPMX20_03606 0.42 +1.3 3,796,413 + MPMX20_03606 0.42 +1.3 3,796,413 + MPMX20_03606 0.42 -0.2 3,796,533 - MPMX20_03606 0.49 -0.1 3,796,593 - MPMX20_03606 0.53 -1.1 3,796,642 - MPMX20_03606 0.56 +1.6 3,796,673 + MPMX20_03606 0.58 -1.1 3,796,751 + MPMX20_03606 0.62 +0.6 3,796,759 - MPMX20_03606 0.63 +0.1 3,796,821 + MPMX20_03606 0.66 -0.2 3,796,886 - MPMX20_03606 0.70 -1.2 3,796,886 - MPMX20_03606 0.70 +0.3 3,796,958 + MPMX20_03606 0.74 -0.4 3,796,959 + MPMX20_03606 0.74 +0.4 3,796,965 - MPMX20_03606 0.75 +0.4 3,796,965 - MPMX20_03606 0.75 +0.0 3,796,971 - MPMX20_03606 0.75 -0.6 3,797,046 + MPMX20_03606 0.79 -0.0 3,797,054 - MPMX20_03606 0.80 +1.5 3,797,069 + MPMX20_03606 0.81 -0.9 3,797,090 - MPMX20_03606 0.82 -0.2 3,797,138 - MPMX20_03606 0.85 -1.0 3,797,204 - MPMX20_03606 0.89 +1.5 3,797,304 + -0.4 3,797,315 + -0.6 3,797,333 - -1.1 3,797,348 + +3.0 3,797,353 + +0.7 3,797,356 - -0.4 3,797,386 - -0.3 3,797,403 - +3.0 3,797,499 + +0.6 3,797,546 + MPMX20_03607 0.14 -2.3 3,797,582 - MPMX20_03607 0.18 -0.1 3,797,635 + MPMX20_03607 0.24 +6.1 3,797,635 + MPMX20_03607 0.24 -0.1 3,797,663 - MPMX20_03607 0.27 +0.2 3,797,689 + MPMX20_03607 0.30 -0.7 3,797,690 - MPMX20_03607 0.30 +4.1 3,797,696 + MPMX20_03607 0.31 +0.4 3,797,725 - MPMX20_03607 0.34 +0.8 3,797,747 + MPMX20_03607 0.36 +0.8 3,797,812 + MPMX20_03607 0.43 -2.0 3,797,827 + MPMX20_03607 0.45 +0.1 3,797,835 - MPMX20_03607 0.46 +0.5 3,797,847 - MPMX20_03607 0.47 -0.2 3,797,847 - MPMX20_03607 0.47 +1.3 3,797,847 - MPMX20_03607 0.47 -0.3 3,797,872 + MPMX20_03607 0.50 +0.0 3,797,874 - MPMX20_03607 0.50 +1.4 3,797,874 - MPMX20_03607 0.50 -1.1 3,798,114 - MPMX20_03607 0.76 -0.6 3,798,124 - MPMX20_03607 0.77 -1.4 3,798,190 - MPMX20_03607 0.84 -1.2 3,798,209 - MPMX20_03607 0.86 -0.4 3,798,219 - MPMX20_03607 0.87 -0.5 3,798,222 + MPMX20_03607 0.88 -0.1 3,798,222 + MPMX20_03607 0.88 +0.4 3,798,320 + -0.5 3,798,396 - -0.6 3,798,418 - -1.8 3,798,451 + +0.4 3,798,530 - MPMX20_03608 0.11 -0.6 3,798,605 - MPMX20_03608 0.15 +0.4 3,798,708 + MPMX20_03608 0.20 +0.6 3,798,708 + MPMX20_03608 0.20 -0.7 3,798,716 - MPMX20_03608 0.21 +0.2 3,798,764 - MPMX20_03608 0.23 +0.7 3,798,769 - MPMX20_03608 0.24 -0.0 3,798,769 - MPMX20_03608 0.24 +0.8 3,798,781 + MPMX20_03608 0.24 -0.1 3,798,791 + MPMX20_03608 0.25 -0.2 3,798,836 - MPMX20_03608 0.27 -0.4 3,798,836 - MPMX20_03608 0.27 -1.7 3,798,858 + MPMX20_03608 0.29 -0.9 3,798,859 - MPMX20_03608 0.29 +0.4 3,798,863 + MPMX20_03608 0.29 -1.9 3,798,960 - MPMX20_03608 0.34 -0.7 3,799,163 - MPMX20_03608 0.45 +2.0 3,799,165 + MPMX20_03608 0.46 +1.0 3,799,183 + MPMX20_03608 0.47 +0.5 3,799,191 - MPMX20_03608 0.47 +0.3 3,799,206 + MPMX20_03608 0.48 -0.6 3,799,231 + MPMX20_03608 0.49 +6.3 3,799,254 - MPMX20_03608 0.50 +0.2 3,799,320 - MPMX20_03608 0.54 +1.4 3,799,324 + MPMX20_03608 0.54 -0.4
Or see this region's nucleotide sequence