Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00911

Experiment: TSB plate, Mixed culture; Bacillus pumilus TBS_099 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00910 and MPMX20_00911 are separated by 239 nucleotidesMPMX20_00911 and MPMX20_00912 are separated by 46 nucleotidesMPMX20_00912 and MPMX20_00913 overlap by 30 nucleotides MPMX20_00910: MPMX20_00910 - Acyl-coenzyme A dehydrogenase, at 958,021 to 960,465 _00910 MPMX20_00911: MPMX20_00911 - Phosphoheptose isomerase, at 960,705 to 961,283 _00911 MPMX20_00912: MPMX20_00912 - Putative glutamine amidotransferase YafJ, at 961,330 to 962,097 _00912 MPMX20_00913: MPMX20_00913 - hypothetical protein, at 962,068 to 962,808 _00913 Position (kb) 960 961 962Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 959.733 kb on + strand, within MPMX20_00910at 959.741 kb on - strand, within MPMX20_00910at 959.741 kb on - strand, within MPMX20_00910at 959.743 kb on + strand, within MPMX20_00910at 959.751 kb on - strand, within MPMX20_00910at 959.751 kb on - strand, within MPMX20_00910at 959.751 kb on - strand, within MPMX20_00910at 959.799 kb on - strand, within MPMX20_00910at 959.808 kb on + strand, within MPMX20_00910at 959.832 kb on + strand, within MPMX20_00910at 959.849 kb on - strand, within MPMX20_00910at 959.862 kb on - strand, within MPMX20_00910at 959.942 kb on - strand, within MPMX20_00910at 960.032 kb on - strand, within MPMX20_00910at 960.043 kb on + strand, within MPMX20_00910at 960.096 kb on - strand, within MPMX20_00910at 960.122 kb on - strand, within MPMX20_00910at 960.152 kb on + strand, within MPMX20_00910at 960.160 kb on - strand, within MPMX20_00910at 960.160 kb on - strand, within MPMX20_00910at 960.160 kb on - strand, within MPMX20_00910at 960.160 kb on - strand, within MPMX20_00910at 960.160 kb on - strand, within MPMX20_00910at 960.160 kb on - strand, within MPMX20_00910at 960.173 kb on + strand, within MPMX20_00910at 960.242 kb on + strandat 960.242 kb on + strandat 960.242 kb on + strandat 960.250 kb on - strandat 960.250 kb on - strandat 960.350 kb on - strandat 960.365 kb on + strandat 960.373 kb on - strandat 960.378 kb on + strandat 960.432 kb on + strandat 960.432 kb on + strandat 960.432 kb on + strandat 960.432 kb on + strandat 960.435 kb on - strandat 960.435 kb on - strandat 960.440 kb on - strandat 960.580 kb on + strandat 960.585 kb on + strandat 960.593 kb on - strandat 960.629 kb on + strandat 960.629 kb on + strandat 960.629 kb on + strandat 960.630 kb on + strandat 960.637 kb on - strandat 960.660 kb on + strandat 960.663 kb on - strandat 960.664 kb on + strandat 960.670 kb on - strandat 960.675 kb on - strandat 961.285 kb on + strandat 961.295 kb on + strandat 961.303 kb on - strandat 961.330 kb on - strandat 961.384 kb on - strandat 961.437 kb on + strand, within MPMX20_00912at 961.456 kb on + strand, within MPMX20_00912at 961.456 kb on + strand, within MPMX20_00912at 961.456 kb on + strand, within MPMX20_00912at 961.483 kb on + strand, within MPMX20_00912at 961.514 kb on + strand, within MPMX20_00912at 961.519 kb on + strand, within MPMX20_00912at 961.519 kb on + strand, within MPMX20_00912at 961.527 kb on - strand, within MPMX20_00912at 961.527 kb on - strand, within MPMX20_00912at 961.532 kb on - strand, within MPMX20_00912at 961.563 kb on - strand, within MPMX20_00912at 961.613 kb on + strand, within MPMX20_00912at 961.641 kb on - strand, within MPMX20_00912at 961.738 kb on + strand, within MPMX20_00912at 961.765 kb on - strand, within MPMX20_00912at 961.782 kb on + strand, within MPMX20_00912at 961.810 kb on - strand, within MPMX20_00912at 961.817 kb on + strand, within MPMX20_00912at 961.817 kb on + strand, within MPMX20_00912at 961.817 kb on + strand, within MPMX20_00912at 961.825 kb on - strand, within MPMX20_00912at 961.825 kb on - strand, within MPMX20_00912at 961.825 kb on - strand, within MPMX20_00912at 961.825 kb on - strand, within MPMX20_00912at 961.842 kb on + strand, within MPMX20_00912at 961.855 kb on - strand, within MPMX20_00912at 961.912 kb on - strand, within MPMX20_00912at 961.922 kb on + strand, within MPMX20_00912at 962.045 kb on + strandat 962.190 kb on + strand, within MPMX20_00913at 962.200 kb on + strand, within MPMX20_00913at 962.257 kb on + strand, within MPMX20_00913

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, Mixed culture; Bacillus pumilus TBS_099 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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959,733 + MPMX20_00910 0.70 -1.3
959,741 - MPMX20_00910 0.70 +0.6
959,741 - MPMX20_00910 0.70 +3.7
959,743 + MPMX20_00910 0.70 +1.5
959,751 - MPMX20_00910 0.71 +0.4
959,751 - MPMX20_00910 0.71 +0.5
959,751 - MPMX20_00910 0.71 +0.1
959,799 - MPMX20_00910 0.73 -2.0
959,808 + MPMX20_00910 0.73 +1.0
959,832 + MPMX20_00910 0.74 +0.9
959,849 - MPMX20_00910 0.75 -0.4
959,862 - MPMX20_00910 0.75 -0.1
959,942 - MPMX20_00910 0.79 -1.4
960,032 - MPMX20_00910 0.82 -1.2
960,043 + MPMX20_00910 0.83 +1.5
960,096 - MPMX20_00910 0.85 -0.1
960,122 - MPMX20_00910 0.86 -0.2
960,152 + MPMX20_00910 0.87 -0.4
960,160 - MPMX20_00910 0.87 +0.5
960,160 - MPMX20_00910 0.87 +2.0
960,160 - MPMX20_00910 0.87 -0.1
960,160 - MPMX20_00910 0.87 -1.2
960,160 - MPMX20_00910 0.87 -2.5
960,160 - MPMX20_00910 0.87 -0.7
960,173 + MPMX20_00910 0.88 +0.5
960,242 + +0.2
960,242 + -0.2
960,242 + -0.8
960,250 - +0.1
960,250 - +0.5
960,350 - +2.5
960,365 + -0.9
960,373 - -0.0
960,378 + -0.7
960,432 + -0.5
960,432 + +0.1
960,432 + +0.1
960,432 + +1.1
960,435 - +0.5
960,435 - +0.5
960,440 - +0.5
960,580 + -0.1
960,585 + -0.4
960,593 - -0.4
960,629 + -0.9
960,629 + +0.1
960,629 + -0.3
960,630 + -2.0
960,637 - +0.6
960,660 + +0.8
960,663 - +1.1
960,664 + +0.1
960,670 - -0.1
960,675 - -0.1
961,285 + -1.2
961,295 + -0.2
961,303 - -0.5
961,330 - -0.1
961,384 - -0.9
961,437 + MPMX20_00912 0.14 -0.2
961,456 + MPMX20_00912 0.16 +3.6
961,456 + MPMX20_00912 0.16 +1.2
961,456 + MPMX20_00912 0.16 +2.8
961,483 + MPMX20_00912 0.20 +5.8
961,514 + MPMX20_00912 0.24 -0.0
961,519 + MPMX20_00912 0.25 -1.1
961,519 + MPMX20_00912 0.25 +0.5
961,527 - MPMX20_00912 0.26 -1.4
961,527 - MPMX20_00912 0.26 +0.3
961,532 - MPMX20_00912 0.26 -0.7
961,563 - MPMX20_00912 0.30 -1.9
961,613 + MPMX20_00912 0.37 -0.2
961,641 - MPMX20_00912 0.40 +0.6
961,738 + MPMX20_00912 0.53 +0.7
961,765 - MPMX20_00912 0.57 +0.2
961,782 + MPMX20_00912 0.59 -0.5
961,810 - MPMX20_00912 0.62 -1.1
961,817 + MPMX20_00912 0.63 -0.0
961,817 + MPMX20_00912 0.63 +0.2
961,817 + MPMX20_00912 0.63 -0.5
961,825 - MPMX20_00912 0.64 +0.1
961,825 - MPMX20_00912 0.64 +0.5
961,825 - MPMX20_00912 0.64 +1.5
961,825 - MPMX20_00912 0.64 +0.7
961,842 + MPMX20_00912 0.67 +1.2
961,855 - MPMX20_00912 0.68 +0.5
961,912 - MPMX20_00912 0.76 -1.1
961,922 + MPMX20_00912 0.77 -1.0
962,045 + +0.5
962,190 + MPMX20_00913 0.16 -1.2
962,200 + MPMX20_00913 0.18 -0.8
962,257 + MPMX20_00913 0.26 +0.3

Or see this region's nucleotide sequence