Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00178

Experiment: M9 plate, Mixed culture; Bacillus pumilus TBS_099 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00177 and MPMX20_00178 are separated by 26 nucleotidesMPMX20_00178 and MPMX20_00179 are separated by 108 nucleotides MPMX20_00177: MPMX20_00177 - Glyoxylate/hydroxypyruvate reductase B, at 183,904 to 184,878 _00177 MPMX20_00178: MPMX20_00178 - Putative tartrate transporter, at 184,905 to 186,185 _00178 MPMX20_00179: MPMX20_00179 - 2-dehydro-3-deoxygluconokinase, at 186,294 to 187,232 _00179 Position (kb) 184 185 186 187Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 183.921 kb on + strandat 183.929 kb on - strandat 183.935 kb on + strandat 184.103 kb on - strand, within MPMX20_00177at 184.109 kb on + strand, within MPMX20_00177at 184.115 kb on + strand, within MPMX20_00177at 184.131 kb on - strand, within MPMX20_00177at 184.158 kb on + strand, within MPMX20_00177at 184.265 kb on - strand, within MPMX20_00177at 184.282 kb on + strand, within MPMX20_00177at 184.289 kb on + strand, within MPMX20_00177at 184.395 kb on + strand, within MPMX20_00177at 184.403 kb on - strand, within MPMX20_00177at 184.403 kb on - strand, within MPMX20_00177at 184.409 kb on - strand, within MPMX20_00177at 184.435 kb on - strand, within MPMX20_00177at 184.458 kb on + strand, within MPMX20_00177at 184.458 kb on + strand, within MPMX20_00177at 184.458 kb on + strand, within MPMX20_00177at 184.458 kb on + strand, within MPMX20_00177at 184.458 kb on + strand, within MPMX20_00177at 184.466 kb on - strand, within MPMX20_00177at 184.466 kb on - strand, within MPMX20_00177at 184.574 kb on + strand, within MPMX20_00177at 184.620 kb on + strand, within MPMX20_00177at 184.620 kb on + strand, within MPMX20_00177at 184.628 kb on - strand, within MPMX20_00177at 184.628 kb on - strand, within MPMX20_00177at 184.662 kb on + strand, within MPMX20_00177at 184.729 kb on - strand, within MPMX20_00177at 184.755 kb on + strand, within MPMX20_00177at 184.808 kb on - strandat 184.850 kb on + strandat 184.872 kb on + strandat 184.913 kb on + strandat 184.974 kb on - strandat 184.985 kb on + strandat 185.032 kb on - strandat 185.080 kb on + strand, within MPMX20_00178at 185.086 kb on + strand, within MPMX20_00178at 185.094 kb on - strand, within MPMX20_00178at 185.094 kb on - strand, within MPMX20_00178at 185.094 kb on - strand, within MPMX20_00178at 185.125 kb on - strand, within MPMX20_00178at 185.198 kb on + strand, within MPMX20_00178at 185.208 kb on - strand, within MPMX20_00178at 185.250 kb on + strand, within MPMX20_00178at 185.258 kb on - strand, within MPMX20_00178at 185.360 kb on - strand, within MPMX20_00178at 185.414 kb on + strand, within MPMX20_00178at 185.440 kb on - strand, within MPMX20_00178at 185.447 kb on + strand, within MPMX20_00178at 185.481 kb on - strand, within MPMX20_00178at 185.522 kb on - strand, within MPMX20_00178at 185.553 kb on - strand, within MPMX20_00178at 185.579 kb on - strand, within MPMX20_00178at 185.603 kb on + strand, within MPMX20_00178at 185.608 kb on + strand, within MPMX20_00178at 185.635 kb on - strand, within MPMX20_00178at 185.649 kb on - strand, within MPMX20_00178at 185.668 kb on + strand, within MPMX20_00178at 185.699 kb on + strand, within MPMX20_00178at 185.707 kb on - strand, within MPMX20_00178at 185.730 kb on - strand, within MPMX20_00178at 185.737 kb on + strand, within MPMX20_00178at 185.751 kb on - strand, within MPMX20_00178at 185.764 kb on + strand, within MPMX20_00178at 185.836 kb on + strand, within MPMX20_00178at 185.906 kb on - strand, within MPMX20_00178at 185.906 kb on - strand, within MPMX20_00178at 185.906 kb on - strand, within MPMX20_00178at 185.917 kb on + strand, within MPMX20_00178at 185.930 kb on + strand, within MPMX20_00178at 185.932 kb on - strand, within MPMX20_00178at 185.997 kb on + strand, within MPMX20_00178at 186.051 kb on + strand, within MPMX20_00178at 186.051 kb on + strand, within MPMX20_00178at 186.114 kb on - strandat 186.118 kb on - strandat 186.180 kb on + strandat 186.180 kb on + strandat 186.180 kb on + strandat 186.180 kb on + strandat 186.180 kb on + strandat 186.201 kb on + strandat 186.201 kb on + strandat 186.240 kb on + strandat 186.255 kb on + strandat 186.263 kb on - strandat 186.305 kb on + strandat 186.415 kb on + strand, within MPMX20_00179at 186.423 kb on - strand, within MPMX20_00179at 186.556 kb on + strand, within MPMX20_00179at 186.617 kb on + strand, within MPMX20_00179at 186.645 kb on + strand, within MPMX20_00179at 186.672 kb on + strand, within MPMX20_00179at 186.722 kb on + strand, within MPMX20_00179at 186.722 kb on + strand, within MPMX20_00179at 186.722 kb on + strand, within MPMX20_00179at 186.722 kb on + strand, within MPMX20_00179at 186.722 kb on + strand, within MPMX20_00179at 186.722 kb on + strand, within MPMX20_00179at 186.730 kb on - strand, within MPMX20_00179at 186.827 kb on + strand, within MPMX20_00179at 186.870 kb on - strand, within MPMX20_00179at 187.044 kb on + strand, within MPMX20_00179at 187.055 kb on - strand, within MPMX20_00179at 187.085 kb on - strand, within MPMX20_00179at 187.115 kb on + strand, within MPMX20_00179at 187.118 kb on - strand, within MPMX20_00179at 187.118 kb on - strand, within MPMX20_00179at 187.123 kb on - strand, within MPMX20_00179at 187.127 kb on - strand, within MPMX20_00179at 187.143 kb on + strandat 187.153 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, Mixed culture; Bacillus pumilus TBS_099 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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183,921 + -0.2
183,929 - +1.6
183,935 + -0.6
184,103 - MPMX20_00177 0.20 -0.1
184,109 + MPMX20_00177 0.21 -0.9
184,115 + MPMX20_00177 0.22 -1.3
184,131 - MPMX20_00177 0.23 -0.3
184,158 + MPMX20_00177 0.26 +0.7
184,265 - MPMX20_00177 0.37 -0.2
184,282 + MPMX20_00177 0.39 -0.3
184,289 + MPMX20_00177 0.39 -0.4
184,395 + MPMX20_00177 0.50 -0.4
184,403 - MPMX20_00177 0.51 -1.9
184,403 - MPMX20_00177 0.51 -0.5
184,409 - MPMX20_00177 0.52 +0.7
184,435 - MPMX20_00177 0.54 -0.3
184,458 + MPMX20_00177 0.57 -0.2
184,458 + MPMX20_00177 0.57 -1.7
184,458 + MPMX20_00177 0.57 -1.3
184,458 + MPMX20_00177 0.57 +1.1
184,458 + MPMX20_00177 0.57 +1.7
184,466 - MPMX20_00177 0.58 -2.3
184,466 - MPMX20_00177 0.58 +0.7
184,574 + MPMX20_00177 0.69 -1.3
184,620 + MPMX20_00177 0.73 +0.0
184,620 + MPMX20_00177 0.73 +3.3
184,628 - MPMX20_00177 0.74 -1.2
184,628 - MPMX20_00177 0.74 -0.8
184,662 + MPMX20_00177 0.78 -0.9
184,729 - MPMX20_00177 0.85 +1.7
184,755 + MPMX20_00177 0.87 -1.5
184,808 - -1.8
184,850 + -0.1
184,872 + +0.3
184,913 + +0.8
184,974 - -0.7
184,985 + -0.9
185,032 - +0.4
185,080 + MPMX20_00178 0.14 -0.9
185,086 + MPMX20_00178 0.14 +0.5
185,094 - MPMX20_00178 0.15 -0.4
185,094 - MPMX20_00178 0.15 +0.7
185,094 - MPMX20_00178 0.15 +0.1
185,125 - MPMX20_00178 0.17 +1.3
185,198 + MPMX20_00178 0.23 -0.4
185,208 - MPMX20_00178 0.24 -2.9
185,250 + MPMX20_00178 0.27 +4.6
185,258 - MPMX20_00178 0.28 -0.5
185,360 - MPMX20_00178 0.36 +0.5
185,414 + MPMX20_00178 0.40 -2.0
185,440 - MPMX20_00178 0.42 +0.8
185,447 + MPMX20_00178 0.42 -0.3
185,481 - MPMX20_00178 0.45 -0.2
185,522 - MPMX20_00178 0.48 +1.4
185,553 - MPMX20_00178 0.51 +0.4
185,579 - MPMX20_00178 0.53 -1.8
185,603 + MPMX20_00178 0.54 -1.5
185,608 + MPMX20_00178 0.55 -0.0
185,635 - MPMX20_00178 0.57 -0.6
185,649 - MPMX20_00178 0.58 +0.2
185,668 + MPMX20_00178 0.60 -1.3
185,699 + MPMX20_00178 0.62 +0.2
185,707 - MPMX20_00178 0.63 -0.3
185,730 - MPMX20_00178 0.64 +0.1
185,737 + MPMX20_00178 0.65 -0.6
185,751 - MPMX20_00178 0.66 -0.6
185,764 + MPMX20_00178 0.67 +2.3
185,836 + MPMX20_00178 0.73 +0.2
185,906 - MPMX20_00178 0.78 +1.4
185,906 - MPMX20_00178 0.78 +0.6
185,906 - MPMX20_00178 0.78 +1.7
185,917 + MPMX20_00178 0.79 +0.5
185,930 + MPMX20_00178 0.80 -0.2
185,932 - MPMX20_00178 0.80 -0.3
185,997 + MPMX20_00178 0.85 +1.7
186,051 + MPMX20_00178 0.89 -1.4
186,051 + MPMX20_00178 0.89 +0.7
186,114 - -1.5
186,118 - +0.4
186,180 + -2.8
186,180 + +1.4
186,180 + +1.4
186,180 + +2.7
186,180 + -1.2
186,201 + -0.5
186,201 + +1.1
186,240 + +0.0
186,255 + -1.5
186,263 - -0.8
186,305 + +0.8
186,415 + MPMX20_00179 0.13 -0.5
186,423 - MPMX20_00179 0.14 +0.7
186,556 + MPMX20_00179 0.28 -0.6
186,617 + MPMX20_00179 0.34 -0.3
186,645 + MPMX20_00179 0.37 -0.2
186,672 + MPMX20_00179 0.40 -0.2
186,722 + MPMX20_00179 0.46 -0.6
186,722 + MPMX20_00179 0.46 -0.1
186,722 + MPMX20_00179 0.46 +0.6
186,722 + MPMX20_00179 0.46 -0.5
186,722 + MPMX20_00179 0.46 -1.8
186,722 + MPMX20_00179 0.46 -0.1
186,730 - MPMX20_00179 0.46 -2.2
186,827 + MPMX20_00179 0.57 +0.3
186,870 - MPMX20_00179 0.61 +1.1
187,044 + MPMX20_00179 0.80 -0.8
187,055 - MPMX20_00179 0.81 -1.9
187,085 - MPMX20_00179 0.84 -0.3
187,115 + MPMX20_00179 0.87 -0.1
187,118 - MPMX20_00179 0.88 -1.6
187,118 - MPMX20_00179 0.88 +0.4
187,123 - MPMX20_00179 0.88 -1.2
187,127 - MPMX20_00179 0.89 -1.0
187,143 + -1.6
187,153 + -1.2

Or see this region's nucleotide sequence