Experiment: 1X LB plate, Mixed culture; Bacillus pumilus TBS_099 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03744 and MPMX20_03745 are separated by 103 nucleotides MPMX20_03745 and MPMX20_03746 are separated by 464 nucleotides MPMX20_03746 and MPMX20_03747 are separated by 80 nucleotides MPMX20_03747 and MPMX20_03748 are separated by 162 nucleotides MPMX20_03748 and MPMX20_03749 are separated by 39 nucleotides
MPMX20_03744: MPMX20_03744 - hypothetical protein, at 3,947,542 to 3,948,084
_03744
MPMX20_03745: MPMX20_03745 - hypothetical protein, at 3,948,188 to 3,948,334
_03745
MPMX20_03746: MPMX20_03746 - tRNA-Gly, at 3,948,799 to 3,948,872
_03746
MPMX20_03747: MPMX20_03747 - Murein hydrolase activator NlpD, at 3,948,953 to 3,949,693
_03747
MPMX20_03748: MPMX20_03748 - Isopentenyl-diphosphate Delta-isomerase, at 3,949,856 to 3,950,398
_03748
MPMX20_03749: MPMX20_03749 - Lysine--tRNA ligase, at 3,950,438 to 3,951,955
_03749
Position (kb)
3948
3949
3950 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6
7
8 at 3947.964 kb on - strand, within MPMX20_03744 at 3947.964 kb on - strand, within MPMX20_03744 at 3947.965 kb on - strand, within MPMX20_03744 at 3947.965 kb on - strand, within MPMX20_03744 at 3947.966 kb on - strand, within MPMX20_03744 at 3947.966 kb on - strand, within MPMX20_03744 at 3947.995 kb on - strand, within MPMX20_03744 at 3947.997 kb on - strand, within MPMX20_03744 at 3947.997 kb on - strand, within MPMX20_03744 at 3947.997 kb on - strand, within MPMX20_03744 at 3947.997 kb on - strand, within MPMX20_03744 at 3947.997 kb on - strand, within MPMX20_03744 at 3947.997 kb on - strand, within MPMX20_03744 at 3947.997 kb on - strand, within MPMX20_03744 at 3947.997 kb on - strand, within MPMX20_03744 at 3947.997 kb on - strand, within MPMX20_03744 at 3947.997 kb on - strand, within MPMX20_03744 at 3947.997 kb on - strand, within MPMX20_03744 at 3948.023 kb on - strand, within MPMX20_03744 at 3948.023 kb on - strand, within MPMX20_03744 at 3948.023 kb on - strand, within MPMX20_03744 at 3948.023 kb on - strand, within MPMX20_03744 at 3948.023 kb on - strand, within MPMX20_03744 at 3948.023 kb on - strand, within MPMX20_03744 at 3948.023 kb on - strand, within MPMX20_03744 at 3948.023 kb on - strand, within MPMX20_03744 at 3948.024 kb on - strand, within MPMX20_03744 at 3948.035 kb on - strand at 3948.035 kb on - strand at 3948.044 kb on - strand at 3948.044 kb on - strand at 3948.044 kb on - strand at 3948.044 kb on - strand at 3948.044 kb on - strand at 3948.060 kb on - strand at 3948.065 kb on + strand at 3948.073 kb on - strand at 3948.073 kb on - strand at 3948.073 kb on - strand at 3948.073 kb on - strand at 3948.073 kb on - strand at 3948.080 kb on + strand at 3948.080 kb on + strand at 3948.080 kb on + strand at 3948.080 kb on + strand at 3948.080 kb on + strand at 3948.088 kb on - strand at 3948.088 kb on - strand at 3948.088 kb on - strand at 3948.088 kb on - strand at 3948.088 kb on - strand at 3948.088 kb on - strand at 3948.088 kb on - strand at 3948.088 kb on - strand at 3948.088 kb on - strand at 3948.088 kb on - strand at 3948.088 kb on - strand at 3948.088 kb on - strand at 3948.088 kb on - strand at 3948.088 kb on - strand at 3948.088 kb on - strand at 3948.088 kb on - strand at 3948.088 kb on - strand at 3948.103 kb on - strand at 3948.157 kb on - strand at 3948.179 kb on + strand at 3948.179 kb on - strand at 3948.186 kb on + strand at 3948.187 kb on - strand at 3948.194 kb on - strand at 3948.203 kb on - strand, within MPMX20_03745 at 3948.217 kb on - strand, within MPMX20_03745 at 3948.217 kb on - strand, within MPMX20_03745 at 3948.217 kb on - strand, within MPMX20_03745 at 3948.222 kb on - strand, within MPMX20_03745 at 3948.249 kb on - strand, within MPMX20_03745 at 3948.255 kb on - strand, within MPMX20_03745 at 3948.258 kb on + strand, within MPMX20_03745 at 3948.259 kb on + strand, within MPMX20_03745 at 3948.266 kb on - strand, within MPMX20_03745 at 3948.266 kb on - strand, within MPMX20_03745 at 3948.267 kb on - strand, within MPMX20_03745 at 3948.267 kb on - strand, within MPMX20_03745 at 3948.267 kb on - strand, within MPMX20_03745 at 3948.272 kb on - strand, within MPMX20_03745 at 3948.281 kb on + strand, within MPMX20_03745 at 3948.281 kb on + strand, within MPMX20_03745 at 3948.289 kb on - strand, within MPMX20_03745 at 3948.316 kb on + strand, within MPMX20_03745 at 3948.320 kb on + strand at 3948.336 kb on - strand at 3948.340 kb on + strand at 3948.340 kb on + strand at 3948.342 kb on - strand at 3948.343 kb on - strand at 3948.343 kb on - strand at 3948.348 kb on - strand at 3948.348 kb on - strand at 3948.348 kb on - strand at 3948.348 kb on - strand at 3948.348 kb on - strand at 3948.362 kb on - strand at 3948.378 kb on - strand at 3948.378 kb on - strand at 3948.455 kb on + strand at 3948.484 kb on - strand at 3948.489 kb on + strand at 3948.491 kb on - strand at 3948.492 kb on - strand at 3948.492 kb on - strand at 3948.497 kb on - strand at 3948.501 kb on - strand at 3948.501 kb on - strand at 3948.513 kb on - strand at 3948.513 kb on - strand at 3948.526 kb on + strand at 3948.566 kb on - strand at 3948.566 kb on - strand at 3948.566 kb on - strand at 3948.568 kb on + strand at 3948.576 kb on - strand at 3948.597 kb on - strand at 3948.605 kb on + strand at 3948.622 kb on + strand at 3948.628 kb on - strand at 3948.628 kb on - strand at 3948.630 kb on - strand at 3948.646 kb on - strand at 3948.648 kb on + strand at 3948.656 kb on - strand at 3948.656 kb on - strand at 3948.658 kb on + strand at 3948.666 kb on - strand at 3948.668 kb on + strand at 3948.668 kb on + strand at 3948.668 kb on + strand at 3948.668 kb on + strand at 3948.676 kb on - strand at 3948.676 kb on - strand at 3948.684 kb on - strand at 3948.686 kb on - strand at 3948.694 kb on - strand at 3948.717 kb on + strand at 3948.725 kb on - strand at 3948.790 kb on + strand at 3948.814 kb on - strand, within MPMX20_03746 at 3948.824 kb on + strand, within MPMX20_03746 at 3948.824 kb on + strand, within MPMX20_03746 at 3948.835 kb on - strand, within MPMX20_03746 at 3948.835 kb on - strand, within MPMX20_03746 at 3948.851 kb on - strand, within MPMX20_03746 at 3948.871 kb on + strand at 3948.871 kb on + strand at 3948.872 kb on + strand at 3948.879 kb on - strand at 3948.879 kb on - strand at 3948.879 kb on - strand at 3948.879 kb on - strand at 3948.879 kb on - strand at 3948.888 kb on + strand at 3948.898 kb on + strand at 3948.899 kb on - strand at 3948.920 kb on - strand at 3948.984 kb on + strand at 3949.112 kb on - strand, within MPMX20_03747 at 3949.142 kb on + strand, within MPMX20_03747 at 3949.150 kb on - strand, within MPMX20_03747 at 3949.174 kb on + strand, within MPMX20_03747 at 3949.210 kb on + strand, within MPMX20_03747 at 3949.211 kb on - strand, within MPMX20_03747 at 3949.239 kb on + strand, within MPMX20_03747 at 3949.255 kb on - strand, within MPMX20_03747 at 3949.287 kb on + strand, within MPMX20_03747 at 3949.293 kb on + strand, within MPMX20_03747 at 3949.316 kb on - strand, within MPMX20_03747 at 3949.332 kb on + strand, within MPMX20_03747 at 3949.332 kb on + strand, within MPMX20_03747 at 3949.356 kb on + strand, within MPMX20_03747 at 3949.374 kb on + strand, within MPMX20_03747 at 3949.382 kb on - strand, within MPMX20_03747 at 3949.382 kb on - strand, within MPMX20_03747 at 3949.396 kb on - strand, within MPMX20_03747 at 3949.470 kb on - strand, within MPMX20_03747 at 3949.477 kb on - strand, within MPMX20_03747 at 3949.525 kb on - strand, within MPMX20_03747 at 3949.525 kb on - strand, within MPMX20_03747 at 3949.546 kb on + strand, within MPMX20_03747 at 3949.546 kb on + strand, within MPMX20_03747 at 3949.554 kb on - strand, within MPMX20_03747 at 3949.554 kb on - strand, within MPMX20_03747 at 3949.554 kb on - strand, within MPMX20_03747 at 3949.574 kb on - strand, within MPMX20_03747 at 3949.587 kb on - strand, within MPMX20_03747 at 3949.597 kb on - strand, within MPMX20_03747 at 3949.609 kb on + strand, within MPMX20_03747 at 3949.631 kb on - strand at 3949.691 kb on + strand at 3949.724 kb on + strand at 3949.724 kb on + strand at 3949.743 kb on - strand at 3949.743 kb on - strand at 3949.750 kb on + strand at 3949.755 kb on + strand at 3949.797 kb on - strand at 3949.799 kb on + strand at 3949.819 kb on + strand at 3949.819 kb on + strand at 3949.921 kb on - strand, within MPMX20_03748 at 3949.951 kb on + strand, within MPMX20_03748 at 3950.031 kb on + strand, within MPMX20_03748 at 3950.047 kb on - strand, within MPMX20_03748 at 3950.073 kb on - strand, within MPMX20_03748 at 3950.073 kb on - strand, within MPMX20_03748 at 3950.120 kb on - strand, within MPMX20_03748 at 3950.154 kb on + strand, within MPMX20_03748 at 3950.272 kb on + strand, within MPMX20_03748 at 3950.278 kb on - strand, within MPMX20_03748 at 3950.294 kb on + strand, within MPMX20_03748 at 3950.294 kb on + strand, within MPMX20_03748 at 3950.328 kb on + strand, within MPMX20_03748 at 3950.328 kb on + strand, within MPMX20_03748 at 3950.328 kb on + strand, within MPMX20_03748 at 3950.329 kb on - strand, within MPMX20_03748 at 3950.336 kb on - strand, within MPMX20_03748 at 3950.353 kb on + strand at 3950.372 kb on - strand at 3950.383 kb on - strand at 3950.448 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, Mixed culture; Bacillus pumilus TBS_099 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 3,947,964 - MPMX20_03744 0.78 +0.1 3,947,964 - MPMX20_03744 0.78 -0.0 3,947,965 - MPMX20_03744 0.78 -0.6 3,947,965 - MPMX20_03744 0.78 -1.6 3,947,966 - MPMX20_03744 0.78 +1.2 3,947,966 - MPMX20_03744 0.78 -0.6 3,947,995 - MPMX20_03744 0.83 +1.6 3,947,997 - MPMX20_03744 0.84 +0.3 3,947,997 - MPMX20_03744 0.84 +1.2 3,947,997 - MPMX20_03744 0.84 -0.8 3,947,997 - MPMX20_03744 0.84 +0.6 3,947,997 - MPMX20_03744 0.84 +0.2 3,947,997 - MPMX20_03744 0.84 +0.5 3,947,997 - MPMX20_03744 0.84 +0.0 3,947,997 - MPMX20_03744 0.84 +0.2 3,947,997 - MPMX20_03744 0.84 +4.3 3,947,997 - MPMX20_03744 0.84 +1.1 3,947,997 - MPMX20_03744 0.84 +0.2 3,948,023 - MPMX20_03744 0.89 -0.6 3,948,023 - MPMX20_03744 0.89 -0.5 3,948,023 - MPMX20_03744 0.89 -0.1 3,948,023 - MPMX20_03744 0.89 +0.7 3,948,023 - MPMX20_03744 0.89 +0.7 3,948,023 - MPMX20_03744 0.89 +1.4 3,948,023 - MPMX20_03744 0.89 +0.1 3,948,023 - MPMX20_03744 0.89 +0.9 3,948,024 - MPMX20_03744 0.89 -0.2 3,948,035 - -0.3 3,948,035 - +0.0 3,948,044 - +0.4 3,948,044 - -0.4 3,948,044 - -1.1 3,948,044 - +0.9 3,948,044 - +0.2 3,948,060 - +1.4 3,948,065 + +0.4 3,948,073 - -0.4 3,948,073 - -0.9 3,948,073 - +1.2 3,948,073 - +0.8 3,948,073 - -0.6 3,948,080 + +2.4 3,948,080 + -1.4 3,948,080 + -1.4 3,948,080 + +0.0 3,948,080 + +0.4 3,948,088 - -0.7 3,948,088 - +0.0 3,948,088 - -0.9 3,948,088 - -0.6 3,948,088 - +0.3 3,948,088 - +0.4 3,948,088 - -0.0 3,948,088 - -0.7 3,948,088 - -0.1 3,948,088 - +0.3 3,948,088 - +2.0 3,948,088 - -0.2 3,948,088 - +0.9 3,948,088 - +1.0 3,948,088 - +1.0 3,948,088 - +0.7 3,948,088 - +0.1 3,948,103 - +0.4 3,948,157 - +2.8 3,948,179 + -0.3 3,948,179 - +0.3 3,948,186 + -0.5 3,948,187 - +0.1 3,948,194 - -0.7 3,948,203 - MPMX20_03745 0.10 +0.5 3,948,217 - MPMX20_03745 0.20 +0.3 3,948,217 - MPMX20_03745 0.20 +0.4 3,948,217 - MPMX20_03745 0.20 -0.4 3,948,222 - MPMX20_03745 0.23 -0.6 3,948,249 - MPMX20_03745 0.41 +0.0 3,948,255 - MPMX20_03745 0.46 -1.4 3,948,258 + MPMX20_03745 0.48 -2.0 3,948,259 + MPMX20_03745 0.48 +1.6 3,948,266 - MPMX20_03745 0.53 +1.4 3,948,266 - MPMX20_03745 0.53 -0.1 3,948,267 - MPMX20_03745 0.54 +1.1 3,948,267 - MPMX20_03745 0.54 +3.9 3,948,267 - MPMX20_03745 0.54 +0.8 3,948,272 - MPMX20_03745 0.57 +0.2 3,948,281 + MPMX20_03745 0.63 -0.6 3,948,281 + MPMX20_03745 0.63 +0.1 3,948,289 - MPMX20_03745 0.69 +1.2 3,948,316 + MPMX20_03745 0.87 +0.6 3,948,320 + -0.6 3,948,336 - -0.0 3,948,340 + +0.6 3,948,340 + +2.4 3,948,342 - +1.2 3,948,343 - -0.6 3,948,343 - -0.0 3,948,348 - +2.9 3,948,348 - -1.3 3,948,348 - -0.7 3,948,348 - +0.1 3,948,348 - -2.9 3,948,362 - -0.4 3,948,378 - +0.1 3,948,378 - -0.7 3,948,455 + +0.1 3,948,484 - +0.9 3,948,489 + -1.0 3,948,491 - +0.4 3,948,492 - +0.3 3,948,492 - +0.9 3,948,497 - -1.0 3,948,501 - -1.2 3,948,501 - +0.4 3,948,513 - -0.6 3,948,513 - -1.1 3,948,526 + +0.3 3,948,566 - -1.0 3,948,566 - -0.6 3,948,566 - +0.4 3,948,568 + +0.1 3,948,576 - -1.5 3,948,597 - -1.6 3,948,605 + -0.5 3,948,622 + -1.6 3,948,628 - -0.3 3,948,628 - -2.8 3,948,630 - -1.7 3,948,646 - -0.1 3,948,648 + +0.3 3,948,656 - +0.2 3,948,656 - -1.2 3,948,658 + +0.7 3,948,666 - -0.0 3,948,668 + +0.3 3,948,668 + -0.0 3,948,668 + -0.1 3,948,668 + -0.1 3,948,676 - -0.5 3,948,676 - +0.4 3,948,684 - -2.7 3,948,686 - -1.6 3,948,694 - -0.9 3,948,717 + -2.4 3,948,725 - +0.9 3,948,790 + +0.6 3,948,814 - MPMX20_03746 0.20 +1.0 3,948,824 + MPMX20_03746 0.34 -0.6 3,948,824 + MPMX20_03746 0.34 +1.3 3,948,835 - MPMX20_03746 0.49 +1.4 3,948,835 - MPMX20_03746 0.49 +0.4 3,948,851 - MPMX20_03746 0.70 -0.0 3,948,871 + +0.3 3,948,871 + +0.6 3,948,872 + -0.1 3,948,879 - -0.7 3,948,879 - -0.1 3,948,879 - -0.8 3,948,879 - +0.4 3,948,879 - -0.1 3,948,888 + -1.9 3,948,898 + -0.6 3,948,899 - +2.0 3,948,920 - +0.4 3,948,984 + +0.2 3,949,112 - MPMX20_03747 0.21 -0.1 3,949,142 + MPMX20_03747 0.26 -1.1 3,949,150 - MPMX20_03747 0.27 -1.4 3,949,174 + MPMX20_03747 0.30 -1.1 3,949,210 + MPMX20_03747 0.35 +8.0 3,949,211 - MPMX20_03747 0.35 +0.9 3,949,239 + MPMX20_03747 0.39 -0.1 3,949,255 - MPMX20_03747 0.41 -1.2 3,949,287 + MPMX20_03747 0.45 +0.8 3,949,293 + MPMX20_03747 0.46 -0.1 3,949,316 - MPMX20_03747 0.49 -0.3 3,949,332 + MPMX20_03747 0.51 -1.8 3,949,332 + MPMX20_03747 0.51 -1.4 3,949,356 + MPMX20_03747 0.54 +1.0 3,949,374 + MPMX20_03747 0.57 +0.4 3,949,382 - MPMX20_03747 0.58 +0.6 3,949,382 - MPMX20_03747 0.58 +0.6 3,949,396 - MPMX20_03747 0.60 +0.6 3,949,470 - MPMX20_03747 0.70 -0.5 3,949,477 - MPMX20_03747 0.71 -0.4 3,949,525 - MPMX20_03747 0.77 +0.9 3,949,525 - MPMX20_03747 0.77 +0.7 3,949,546 + MPMX20_03747 0.80 +1.6 3,949,546 + MPMX20_03747 0.80 -1.0 3,949,554 - MPMX20_03747 0.81 +1.5 3,949,554 - MPMX20_03747 0.81 -0.4 3,949,554 - MPMX20_03747 0.81 -3.0 3,949,574 - MPMX20_03747 0.84 -1.4 3,949,587 - MPMX20_03747 0.86 +0.9 3,949,597 - MPMX20_03747 0.87 -0.4 3,949,609 + MPMX20_03747 0.89 +0.1 3,949,631 - +0.3 3,949,691 + +1.2 3,949,724 + -1.6 3,949,724 + +1.1 3,949,743 - +0.4 3,949,743 - +0.9 3,949,750 + -0.1 3,949,755 + +0.2 3,949,797 - -0.3 3,949,799 + +1.1 3,949,819 + +0.0 3,949,819 + -0.1 3,949,921 - MPMX20_03748 0.12 -0.9 3,949,951 + MPMX20_03748 0.17 -0.4 3,950,031 + MPMX20_03748 0.32 -1.0 3,950,047 - MPMX20_03748 0.35 +0.9 3,950,073 - MPMX20_03748 0.40 +0.4 3,950,073 - MPMX20_03748 0.40 +0.4 3,950,120 - MPMX20_03748 0.49 -0.1 3,950,154 + MPMX20_03748 0.55 -0.6 3,950,272 + MPMX20_03748 0.77 +0.2 3,950,278 - MPMX20_03748 0.78 -1.4 3,950,294 + MPMX20_03748 0.81 -0.3 3,950,294 + MPMX20_03748 0.81 -0.4 3,950,328 + MPMX20_03748 0.87 -0.3 3,950,328 + MPMX20_03748 0.87 -0.3 3,950,328 + MPMX20_03748 0.87 -1.5 3,950,329 - MPMX20_03748 0.87 -0.1 3,950,336 - MPMX20_03748 0.88 -0.8 3,950,353 + +1.0 3,950,372 - +0.9 3,950,383 - +2.4 3,950,448 - +0.6
Or see this region's nucleotide sequence