Experiment: 1X LB plate, Mixed culture; Bacillus pumilus TBS_099 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02002 and MPMX20_02003 are separated by 59 nucleotides MPMX20_02003 and MPMX20_02004 are separated by 105 nucleotides MPMX20_02004 and MPMX20_02005 are separated by 617 nucleotides
MPMX20_02002: MPMX20_02002 - Pyridoxal kinase PdxY, at 2,091,335 to 2,092,195
_02002
MPMX20_02003: MPMX20_02003 - Glutathione S-transferase GstA, at 2,092,255 to 2,092,860
_02003
MPMX20_02004: MPMX20_02004 - Dipeptide and tripeptide permease A, at 2,092,966 to 2,094,474
_02004
MPMX20_02005: MPMX20_02005 - Endonuclease III, at 2,095,092 to 2,095,727
_02005
Position (kb)
2092
2093
2094
2095 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2092.236 kb on + strand at 2092.244 kb on - strand at 2092.246 kb on - strand at 2092.258 kb on + strand at 2092.258 kb on + strand at 2092.258 kb on + strand at 2092.266 kb on - strand at 2092.266 kb on - strand at 2092.271 kb on + strand at 2092.418 kb on + strand, within MPMX20_02003 at 2092.511 kb on + strand, within MPMX20_02003 at 2092.511 kb on - strand, within MPMX20_02003 at 2092.517 kb on + strand, within MPMX20_02003 at 2092.664 kb on + strand, within MPMX20_02003 at 2092.685 kb on - strand, within MPMX20_02003 at 2092.767 kb on + strand, within MPMX20_02003 at 2092.772 kb on + strand, within MPMX20_02003 at 2092.772 kb on + strand, within MPMX20_02003 at 2092.775 kb on - strand, within MPMX20_02003 at 2092.775 kb on - strand, within MPMX20_02003 at 2092.775 kb on - strand, within MPMX20_02003 at 2092.799 kb on + strand, within MPMX20_02003 at 2092.809 kb on + strand at 2092.809 kb on + strand at 2092.809 kb on + strand at 2092.809 kb on + strand at 2092.817 kb on - strand at 2092.829 kb on - strand at 2092.889 kb on - strand at 2092.891 kb on + strand at 2092.899 kb on - strand at 2093.008 kb on + strand at 2093.028 kb on + strand at 2093.047 kb on + strand at 2093.083 kb on - strand at 2093.147 kb on + strand, within MPMX20_02004 at 2093.155 kb on - strand, within MPMX20_02004 at 2093.209 kb on + strand, within MPMX20_02004 at 2093.268 kb on + strand, within MPMX20_02004 at 2093.270 kb on - strand, within MPMX20_02004 at 2093.271 kb on - strand, within MPMX20_02004 at 2093.276 kb on - strand, within MPMX20_02004 at 2093.344 kb on - strand, within MPMX20_02004 at 2093.393 kb on - strand, within MPMX20_02004 at 2093.504 kb on + strand, within MPMX20_02004 at 2093.533 kb on + strand, within MPMX20_02004 at 2093.533 kb on + strand, within MPMX20_02004 at 2093.560 kb on - strand, within MPMX20_02004 at 2093.596 kb on + strand, within MPMX20_02004 at 2093.604 kb on - strand, within MPMX20_02004 at 2093.618 kb on - strand, within MPMX20_02004 at 2093.629 kb on - strand, within MPMX20_02004 at 2093.666 kb on - strand, within MPMX20_02004 at 2093.717 kb on + strand, within MPMX20_02004 at 2093.722 kb on + strand, within MPMX20_02004 at 2093.730 kb on - strand, within MPMX20_02004 at 2093.730 kb on - strand, within MPMX20_02004 at 2093.751 kb on - strand, within MPMX20_02004 at 2093.752 kb on - strand, within MPMX20_02004 at 2093.864 kb on - strand, within MPMX20_02004 at 2093.864 kb on - strand, within MPMX20_02004 at 2093.892 kb on - strand, within MPMX20_02004 at 2093.963 kb on - strand, within MPMX20_02004 at 2094.002 kb on + strand, within MPMX20_02004 at 2094.033 kb on - strand, within MPMX20_02004 at 2094.033 kb on - strand, within MPMX20_02004 at 2094.056 kb on + strand, within MPMX20_02004 at 2094.074 kb on - strand, within MPMX20_02004 at 2094.080 kb on + strand, within MPMX20_02004 at 2094.080 kb on + strand, within MPMX20_02004 at 2094.080 kb on + strand, within MPMX20_02004 at 2094.088 kb on - strand, within MPMX20_02004 at 2094.088 kb on - strand, within MPMX20_02004 at 2094.088 kb on - strand, within MPMX20_02004 at 2094.088 kb on - strand, within MPMX20_02004 at 2094.119 kb on + strand, within MPMX20_02004 at 2094.124 kb on + strand, within MPMX20_02004 at 2094.127 kb on - strand, within MPMX20_02004 at 2094.162 kb on + strand, within MPMX20_02004 at 2094.170 kb on - strand, within MPMX20_02004 at 2094.170 kb on - strand, within MPMX20_02004 at 2094.180 kb on + strand, within MPMX20_02004 at 2094.215 kb on - strand, within MPMX20_02004 at 2094.249 kb on + strand, within MPMX20_02004 at 2094.257 kb on + strand, within MPMX20_02004 at 2094.262 kb on + strand, within MPMX20_02004 at 2094.265 kb on - strand, within MPMX20_02004 at 2094.283 kb on + strand, within MPMX20_02004 at 2094.288 kb on + strand, within MPMX20_02004 at 2094.296 kb on - strand, within MPMX20_02004 at 2094.316 kb on - strand, within MPMX20_02004 at 2094.415 kb on - strand at 2094.433 kb on - strand at 2094.434 kb on - strand at 2094.434 kb on - strand at 2094.434 kb on - strand at 2094.434 kb on - strand at 2094.435 kb on - strand at 2094.440 kb on - strand at 2094.452 kb on + strand at 2094.452 kb on + strand at 2094.460 kb on - strand at 2094.535 kb on - strand at 2094.535 kb on - strand at 2094.536 kb on - strand at 2094.549 kb on - strand at 2094.580 kb on - strand at 2094.581 kb on + strand at 2094.586 kb on + strand at 2094.586 kb on + strand at 2094.586 kb on + strand at 2094.586 kb on + strand at 2094.586 kb on + strand at 2094.586 kb on + strand at 2094.586 kb on + strand at 2094.586 kb on + strand at 2094.586 kb on + strand at 2094.594 kb on - strand at 2094.594 kb on - strand at 2094.594 kb on - strand at 2094.594 kb on - strand at 2094.594 kb on - strand at 2094.594 kb on - strand at 2094.594 kb on - strand at 2094.594 kb on - strand at 2094.594 kb on - strand at 2094.594 kb on - strand at 2094.594 kb on - strand at 2094.594 kb on - strand at 2094.594 kb on - strand at 2094.594 kb on - strand at 2094.594 kb on - strand at 2094.594 kb on - strand at 2094.594 kb on - strand at 2094.594 kb on - strand at 2094.594 kb on - strand at 2094.625 kb on + strand at 2094.663 kb on + strand at 2094.805 kb on + strand at 2094.805 kb on + strand at 2094.828 kb on + strand at 2094.836 kb on - strand at 2094.837 kb on - strand at 2094.837 kb on - strand at 2094.850 kb on + strand at 2094.903 kb on - strand at 2095.103 kb on - strand at 2095.119 kb on + strand at 2095.264 kb on + strand, within MPMX20_02005 at 2095.264 kb on + strand, within MPMX20_02005 at 2095.264 kb on + strand, within MPMX20_02005 at 2095.287 kb on - strand, within MPMX20_02005 at 2095.343 kb on - strand, within MPMX20_02005 at 2095.345 kb on + strand, within MPMX20_02005 at 2095.345 kb on + strand, within MPMX20_02005 at 2095.353 kb on - strand, within MPMX20_02005 at 2095.355 kb on - strand, within MPMX20_02005 at 2095.383 kb on + strand, within MPMX20_02005 at 2095.398 kb on - strand, within MPMX20_02005 at 2095.471 kb on + strand, within MPMX20_02005
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, Mixed culture; Bacillus pumilus TBS_099 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 2,092,236 + -0.7 2,092,244 - -0.6 2,092,246 - +0.2 2,092,258 + -0.9 2,092,258 + -0.6 2,092,258 + -0.2 2,092,266 - -0.9 2,092,266 - +0.2 2,092,271 + -0.9 2,092,418 + MPMX20_02003 0.27 +1.3 2,092,511 + MPMX20_02003 0.42 +0.3 2,092,511 - MPMX20_02003 0.42 -0.3 2,092,517 + MPMX20_02003 0.43 +0.8 2,092,664 + MPMX20_02003 0.67 -0.1 2,092,685 - MPMX20_02003 0.71 -1.2 2,092,767 + MPMX20_02003 0.84 -0.1 2,092,772 + MPMX20_02003 0.85 +2.0 2,092,772 + MPMX20_02003 0.85 -0.1 2,092,775 - MPMX20_02003 0.86 +0.4 2,092,775 - MPMX20_02003 0.86 -0.8 2,092,775 - MPMX20_02003 0.86 -0.8 2,092,799 + MPMX20_02003 0.90 -0.0 2,092,809 + -0.1 2,092,809 + -0.1 2,092,809 + +0.4 2,092,809 + +0.4 2,092,817 - -0.9 2,092,829 - -1.3 2,092,889 - -0.9 2,092,891 + -0.6 2,092,899 - -0.2 2,093,008 + -1.2 2,093,028 + -1.7 2,093,047 + +0.4 2,093,083 - -0.7 2,093,147 + MPMX20_02004 0.12 +0.4 2,093,155 - MPMX20_02004 0.13 +0.8 2,093,209 + MPMX20_02004 0.16 -0.6 2,093,268 + MPMX20_02004 0.20 -0.6 2,093,270 - MPMX20_02004 0.20 +0.1 2,093,271 - MPMX20_02004 0.20 -1.3 2,093,276 - MPMX20_02004 0.21 -0.4 2,093,344 - MPMX20_02004 0.25 -1.2 2,093,393 - MPMX20_02004 0.28 +0.3 2,093,504 + MPMX20_02004 0.36 +1.3 2,093,533 + MPMX20_02004 0.38 +0.3 2,093,533 + MPMX20_02004 0.38 +0.4 2,093,560 - MPMX20_02004 0.39 -1.9 2,093,596 + MPMX20_02004 0.42 -0.2 2,093,604 - MPMX20_02004 0.42 +1.3 2,093,618 - MPMX20_02004 0.43 -1.0 2,093,629 - MPMX20_02004 0.44 +0.2 2,093,666 - MPMX20_02004 0.46 -0.2 2,093,717 + MPMX20_02004 0.50 +0.1 2,093,722 + MPMX20_02004 0.50 -0.5 2,093,730 - MPMX20_02004 0.51 +1.0 2,093,730 - MPMX20_02004 0.51 -0.1 2,093,751 - MPMX20_02004 0.52 -0.4 2,093,752 - MPMX20_02004 0.52 -0.7 2,093,864 - MPMX20_02004 0.60 +2.4 2,093,864 - MPMX20_02004 0.60 +1.4 2,093,892 - MPMX20_02004 0.61 -0.4 2,093,963 - MPMX20_02004 0.66 -0.4 2,094,002 + MPMX20_02004 0.69 -2.7 2,094,033 - MPMX20_02004 0.71 +0.1 2,094,033 - MPMX20_02004 0.71 +0.0 2,094,056 + MPMX20_02004 0.72 +0.2 2,094,074 - MPMX20_02004 0.73 -0.1 2,094,080 + MPMX20_02004 0.74 -0.6 2,094,080 + MPMX20_02004 0.74 -0.2 2,094,080 + MPMX20_02004 0.74 +0.4 2,094,088 - MPMX20_02004 0.74 +2.2 2,094,088 - MPMX20_02004 0.74 -2.1 2,094,088 - MPMX20_02004 0.74 +0.8 2,094,088 - MPMX20_02004 0.74 -0.3 2,094,119 + MPMX20_02004 0.76 +0.0 2,094,124 + MPMX20_02004 0.77 -0.9 2,094,127 - MPMX20_02004 0.77 +0.9 2,094,162 + MPMX20_02004 0.79 -0.9 2,094,170 - MPMX20_02004 0.80 -0.0 2,094,170 - MPMX20_02004 0.80 +0.9 2,094,180 + MPMX20_02004 0.80 -0.2 2,094,215 - MPMX20_02004 0.83 +0.1 2,094,249 + MPMX20_02004 0.85 +1.4 2,094,257 + MPMX20_02004 0.86 +1.7 2,094,262 + MPMX20_02004 0.86 +0.7 2,094,265 - MPMX20_02004 0.86 -0.3 2,094,283 + MPMX20_02004 0.87 -0.2 2,094,288 + MPMX20_02004 0.88 -1.0 2,094,296 - MPMX20_02004 0.88 -0.5 2,094,316 - MPMX20_02004 0.89 +1.3 2,094,415 - -2.1 2,094,433 - -2.4 2,094,434 - +0.2 2,094,434 - -1.4 2,094,434 - +0.3 2,094,434 - -3.0 2,094,435 - -0.6 2,094,440 - +1.0 2,094,452 + -0.1 2,094,452 + -0.2 2,094,460 - -0.8 2,094,535 - -0.2 2,094,535 - +0.4 2,094,536 - +0.0 2,094,549 - +0.1 2,094,580 - -0.5 2,094,581 + +2.1 2,094,586 + +0.5 2,094,586 + -0.2 2,094,586 + +0.3 2,094,586 + +1.0 2,094,586 + -0.5 2,094,586 + -0.3 2,094,586 + -0.3 2,094,586 + -0.4 2,094,586 + -1.3 2,094,594 - -0.5 2,094,594 - +1.9 2,094,594 - -0.2 2,094,594 - -1.8 2,094,594 - +1.2 2,094,594 - +0.2 2,094,594 - +1.8 2,094,594 - +0.1 2,094,594 - -1.9 2,094,594 - -1.4 2,094,594 - -0.9 2,094,594 - +0.9 2,094,594 - +1.0 2,094,594 - +2.0 2,094,594 - -1.6 2,094,594 - -0.1 2,094,594 - -0.9 2,094,594 - +0.6 2,094,594 - +0.4 2,094,625 + -0.2 2,094,663 + +0.2 2,094,805 + +0.3 2,094,805 + +0.1 2,094,828 + -0.9 2,094,836 - +0.5 2,094,837 - -0.7 2,094,837 - +1.1 2,094,850 + -0.7 2,094,903 - +0.1 2,095,103 - -1.2 2,095,119 + +0.4 2,095,264 + MPMX20_02005 0.27 +1.1 2,095,264 + MPMX20_02005 0.27 -0.6 2,095,264 + MPMX20_02005 0.27 -0.9 2,095,287 - MPMX20_02005 0.31 -1.6 2,095,343 - MPMX20_02005 0.39 +0.8 2,095,345 + MPMX20_02005 0.40 -0.2 2,095,345 + MPMX20_02005 0.40 +0.7 2,095,353 - MPMX20_02005 0.41 +0.0 2,095,355 - MPMX20_02005 0.41 -1.8 2,095,383 + MPMX20_02005 0.46 -1.9 2,095,398 - MPMX20_02005 0.48 +0.1 2,095,471 + MPMX20_02005 0.60 -1.9
Or see this region's nucleotide sequence