Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02004

Experiment: 1X LB plate, Mixed culture; Bacillus pumilus TBS_099 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_02002 and MPMX20_02003 are separated by 59 nucleotidesMPMX20_02003 and MPMX20_02004 are separated by 105 nucleotidesMPMX20_02004 and MPMX20_02005 are separated by 617 nucleotides MPMX20_02002: MPMX20_02002 - Pyridoxal kinase PdxY, at 2,091,335 to 2,092,195 _02002 MPMX20_02003: MPMX20_02003 - Glutathione S-transferase GstA, at 2,092,255 to 2,092,860 _02003 MPMX20_02004: MPMX20_02004 - Dipeptide and tripeptide permease A, at 2,092,966 to 2,094,474 _02004 MPMX20_02005: MPMX20_02005 - Endonuclease III, at 2,095,092 to 2,095,727 _02005 Position (kb) 2092 2093 2094 2095Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2092.236 kb on + strandat 2092.244 kb on - strandat 2092.246 kb on - strandat 2092.258 kb on + strandat 2092.258 kb on + strandat 2092.258 kb on + strandat 2092.266 kb on - strandat 2092.266 kb on - strandat 2092.271 kb on + strandat 2092.418 kb on + strand, within MPMX20_02003at 2092.511 kb on + strand, within MPMX20_02003at 2092.511 kb on - strand, within MPMX20_02003at 2092.517 kb on + strand, within MPMX20_02003at 2092.664 kb on + strand, within MPMX20_02003at 2092.685 kb on - strand, within MPMX20_02003at 2092.767 kb on + strand, within MPMX20_02003at 2092.772 kb on + strand, within MPMX20_02003at 2092.772 kb on + strand, within MPMX20_02003at 2092.775 kb on - strand, within MPMX20_02003at 2092.775 kb on - strand, within MPMX20_02003at 2092.775 kb on - strand, within MPMX20_02003at 2092.799 kb on + strand, within MPMX20_02003at 2092.809 kb on + strandat 2092.809 kb on + strandat 2092.809 kb on + strandat 2092.809 kb on + strandat 2092.817 kb on - strandat 2092.829 kb on - strandat 2092.889 kb on - strandat 2092.891 kb on + strandat 2092.899 kb on - strandat 2093.008 kb on + strandat 2093.028 kb on + strandat 2093.047 kb on + strandat 2093.083 kb on - strandat 2093.147 kb on + strand, within MPMX20_02004at 2093.155 kb on - strand, within MPMX20_02004at 2093.209 kb on + strand, within MPMX20_02004at 2093.268 kb on + strand, within MPMX20_02004at 2093.270 kb on - strand, within MPMX20_02004at 2093.271 kb on - strand, within MPMX20_02004at 2093.276 kb on - strand, within MPMX20_02004at 2093.344 kb on - strand, within MPMX20_02004at 2093.393 kb on - strand, within MPMX20_02004at 2093.504 kb on + strand, within MPMX20_02004at 2093.533 kb on + strand, within MPMX20_02004at 2093.533 kb on + strand, within MPMX20_02004at 2093.560 kb on - strand, within MPMX20_02004at 2093.596 kb on + strand, within MPMX20_02004at 2093.604 kb on - strand, within MPMX20_02004at 2093.618 kb on - strand, within MPMX20_02004at 2093.629 kb on - strand, within MPMX20_02004at 2093.666 kb on - strand, within MPMX20_02004at 2093.717 kb on + strand, within MPMX20_02004at 2093.722 kb on + strand, within MPMX20_02004at 2093.730 kb on - strand, within MPMX20_02004at 2093.730 kb on - strand, within MPMX20_02004at 2093.751 kb on - strand, within MPMX20_02004at 2093.752 kb on - strand, within MPMX20_02004at 2093.864 kb on - strand, within MPMX20_02004at 2093.864 kb on - strand, within MPMX20_02004at 2093.892 kb on - strand, within MPMX20_02004at 2093.963 kb on - strand, within MPMX20_02004at 2094.002 kb on + strand, within MPMX20_02004at 2094.033 kb on - strand, within MPMX20_02004at 2094.033 kb on - strand, within MPMX20_02004at 2094.056 kb on + strand, within MPMX20_02004at 2094.074 kb on - strand, within MPMX20_02004at 2094.080 kb on + strand, within MPMX20_02004at 2094.080 kb on + strand, within MPMX20_02004at 2094.080 kb on + strand, within MPMX20_02004at 2094.088 kb on - strand, within MPMX20_02004at 2094.088 kb on - strand, within MPMX20_02004at 2094.088 kb on - strand, within MPMX20_02004at 2094.088 kb on - strand, within MPMX20_02004at 2094.119 kb on + strand, within MPMX20_02004at 2094.124 kb on + strand, within MPMX20_02004at 2094.127 kb on - strand, within MPMX20_02004at 2094.162 kb on + strand, within MPMX20_02004at 2094.170 kb on - strand, within MPMX20_02004at 2094.170 kb on - strand, within MPMX20_02004at 2094.180 kb on + strand, within MPMX20_02004at 2094.215 kb on - strand, within MPMX20_02004at 2094.249 kb on + strand, within MPMX20_02004at 2094.257 kb on + strand, within MPMX20_02004at 2094.262 kb on + strand, within MPMX20_02004at 2094.265 kb on - strand, within MPMX20_02004at 2094.283 kb on + strand, within MPMX20_02004at 2094.288 kb on + strand, within MPMX20_02004at 2094.296 kb on - strand, within MPMX20_02004at 2094.316 kb on - strand, within MPMX20_02004at 2094.415 kb on - strandat 2094.433 kb on - strandat 2094.434 kb on - strandat 2094.434 kb on - strandat 2094.434 kb on - strandat 2094.434 kb on - strandat 2094.435 kb on - strandat 2094.440 kb on - strandat 2094.452 kb on + strandat 2094.452 kb on + strandat 2094.460 kb on - strandat 2094.535 kb on - strandat 2094.535 kb on - strandat 2094.536 kb on - strandat 2094.549 kb on - strandat 2094.580 kb on - strandat 2094.581 kb on + strandat 2094.586 kb on + strandat 2094.586 kb on + strandat 2094.586 kb on + strandat 2094.586 kb on + strandat 2094.586 kb on + strandat 2094.586 kb on + strandat 2094.586 kb on + strandat 2094.586 kb on + strandat 2094.586 kb on + strandat 2094.594 kb on - strandat 2094.594 kb on - strandat 2094.594 kb on - strandat 2094.594 kb on - strandat 2094.594 kb on - strandat 2094.594 kb on - strandat 2094.594 kb on - strandat 2094.594 kb on - strandat 2094.594 kb on - strandat 2094.594 kb on - strandat 2094.594 kb on - strandat 2094.594 kb on - strandat 2094.594 kb on - strandat 2094.594 kb on - strandat 2094.594 kb on - strandat 2094.594 kb on - strandat 2094.594 kb on - strandat 2094.594 kb on - strandat 2094.594 kb on - strandat 2094.625 kb on + strandat 2094.663 kb on + strandat 2094.805 kb on + strandat 2094.805 kb on + strandat 2094.828 kb on + strandat 2094.836 kb on - strandat 2094.837 kb on - strandat 2094.837 kb on - strandat 2094.850 kb on + strandat 2094.903 kb on - strandat 2095.103 kb on - strandat 2095.119 kb on + strandat 2095.264 kb on + strand, within MPMX20_02005at 2095.264 kb on + strand, within MPMX20_02005at 2095.264 kb on + strand, within MPMX20_02005at 2095.287 kb on - strand, within MPMX20_02005at 2095.343 kb on - strand, within MPMX20_02005at 2095.345 kb on + strand, within MPMX20_02005at 2095.345 kb on + strand, within MPMX20_02005at 2095.353 kb on - strand, within MPMX20_02005at 2095.355 kb on - strand, within MPMX20_02005at 2095.383 kb on + strand, within MPMX20_02005at 2095.398 kb on - strand, within MPMX20_02005at 2095.471 kb on + strand, within MPMX20_02005

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, Mixed culture; Bacillus pumilus TBS_099 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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2,092,236 + -0.7
2,092,244 - -0.6
2,092,246 - +0.2
2,092,258 + -0.9
2,092,258 + -0.6
2,092,258 + -0.2
2,092,266 - -0.9
2,092,266 - +0.2
2,092,271 + -0.9
2,092,418 + MPMX20_02003 0.27 +1.3
2,092,511 + MPMX20_02003 0.42 +0.3
2,092,511 - MPMX20_02003 0.42 -0.3
2,092,517 + MPMX20_02003 0.43 +0.8
2,092,664 + MPMX20_02003 0.67 -0.1
2,092,685 - MPMX20_02003 0.71 -1.2
2,092,767 + MPMX20_02003 0.84 -0.1
2,092,772 + MPMX20_02003 0.85 +2.0
2,092,772 + MPMX20_02003 0.85 -0.1
2,092,775 - MPMX20_02003 0.86 +0.4
2,092,775 - MPMX20_02003 0.86 -0.8
2,092,775 - MPMX20_02003 0.86 -0.8
2,092,799 + MPMX20_02003 0.90 -0.0
2,092,809 + -0.1
2,092,809 + -0.1
2,092,809 + +0.4
2,092,809 + +0.4
2,092,817 - -0.9
2,092,829 - -1.3
2,092,889 - -0.9
2,092,891 + -0.6
2,092,899 - -0.2
2,093,008 + -1.2
2,093,028 + -1.7
2,093,047 + +0.4
2,093,083 - -0.7
2,093,147 + MPMX20_02004 0.12 +0.4
2,093,155 - MPMX20_02004 0.13 +0.8
2,093,209 + MPMX20_02004 0.16 -0.6
2,093,268 + MPMX20_02004 0.20 -0.6
2,093,270 - MPMX20_02004 0.20 +0.1
2,093,271 - MPMX20_02004 0.20 -1.3
2,093,276 - MPMX20_02004 0.21 -0.4
2,093,344 - MPMX20_02004 0.25 -1.2
2,093,393 - MPMX20_02004 0.28 +0.3
2,093,504 + MPMX20_02004 0.36 +1.3
2,093,533 + MPMX20_02004 0.38 +0.3
2,093,533 + MPMX20_02004 0.38 +0.4
2,093,560 - MPMX20_02004 0.39 -1.9
2,093,596 + MPMX20_02004 0.42 -0.2
2,093,604 - MPMX20_02004 0.42 +1.3
2,093,618 - MPMX20_02004 0.43 -1.0
2,093,629 - MPMX20_02004 0.44 +0.2
2,093,666 - MPMX20_02004 0.46 -0.2
2,093,717 + MPMX20_02004 0.50 +0.1
2,093,722 + MPMX20_02004 0.50 -0.5
2,093,730 - MPMX20_02004 0.51 +1.0
2,093,730 - MPMX20_02004 0.51 -0.1
2,093,751 - MPMX20_02004 0.52 -0.4
2,093,752 - MPMX20_02004 0.52 -0.7
2,093,864 - MPMX20_02004 0.60 +2.4
2,093,864 - MPMX20_02004 0.60 +1.4
2,093,892 - MPMX20_02004 0.61 -0.4
2,093,963 - MPMX20_02004 0.66 -0.4
2,094,002 + MPMX20_02004 0.69 -2.7
2,094,033 - MPMX20_02004 0.71 +0.1
2,094,033 - MPMX20_02004 0.71 +0.0
2,094,056 + MPMX20_02004 0.72 +0.2
2,094,074 - MPMX20_02004 0.73 -0.1
2,094,080 + MPMX20_02004 0.74 -0.6
2,094,080 + MPMX20_02004 0.74 -0.2
2,094,080 + MPMX20_02004 0.74 +0.4
2,094,088 - MPMX20_02004 0.74 +2.2
2,094,088 - MPMX20_02004 0.74 -2.1
2,094,088 - MPMX20_02004 0.74 +0.8
2,094,088 - MPMX20_02004 0.74 -0.3
2,094,119 + MPMX20_02004 0.76 +0.0
2,094,124 + MPMX20_02004 0.77 -0.9
2,094,127 - MPMX20_02004 0.77 +0.9
2,094,162 + MPMX20_02004 0.79 -0.9
2,094,170 - MPMX20_02004 0.80 -0.0
2,094,170 - MPMX20_02004 0.80 +0.9
2,094,180 + MPMX20_02004 0.80 -0.2
2,094,215 - MPMX20_02004 0.83 +0.1
2,094,249 + MPMX20_02004 0.85 +1.4
2,094,257 + MPMX20_02004 0.86 +1.7
2,094,262 + MPMX20_02004 0.86 +0.7
2,094,265 - MPMX20_02004 0.86 -0.3
2,094,283 + MPMX20_02004 0.87 -0.2
2,094,288 + MPMX20_02004 0.88 -1.0
2,094,296 - MPMX20_02004 0.88 -0.5
2,094,316 - MPMX20_02004 0.89 +1.3
2,094,415 - -2.1
2,094,433 - -2.4
2,094,434 - +0.2
2,094,434 - -1.4
2,094,434 - +0.3
2,094,434 - -3.0
2,094,435 - -0.6
2,094,440 - +1.0
2,094,452 + -0.1
2,094,452 + -0.2
2,094,460 - -0.8
2,094,535 - -0.2
2,094,535 - +0.4
2,094,536 - +0.0
2,094,549 - +0.1
2,094,580 - -0.5
2,094,581 + +2.1
2,094,586 + +0.5
2,094,586 + -0.2
2,094,586 + +0.3
2,094,586 + +1.0
2,094,586 + -0.5
2,094,586 + -0.3
2,094,586 + -0.3
2,094,586 + -0.4
2,094,586 + -1.3
2,094,594 - -0.5
2,094,594 - +1.9
2,094,594 - -0.2
2,094,594 - -1.8
2,094,594 - +1.2
2,094,594 - +0.2
2,094,594 - +1.8
2,094,594 - +0.1
2,094,594 - -1.9
2,094,594 - -1.4
2,094,594 - -0.9
2,094,594 - +0.9
2,094,594 - +1.0
2,094,594 - +2.0
2,094,594 - -1.6
2,094,594 - -0.1
2,094,594 - -0.9
2,094,594 - +0.6
2,094,594 - +0.4
2,094,625 + -0.2
2,094,663 + +0.2
2,094,805 + +0.3
2,094,805 + +0.1
2,094,828 + -0.9
2,094,836 - +0.5
2,094,837 - -0.7
2,094,837 - +1.1
2,094,850 + -0.7
2,094,903 - +0.1
2,095,103 - -1.2
2,095,119 + +0.4
2,095,264 + MPMX20_02005 0.27 +1.1
2,095,264 + MPMX20_02005 0.27 -0.6
2,095,264 + MPMX20_02005 0.27 -0.9
2,095,287 - MPMX20_02005 0.31 -1.6
2,095,343 - MPMX20_02005 0.39 +0.8
2,095,345 + MPMX20_02005 0.40 -0.2
2,095,345 + MPMX20_02005 0.40 +0.7
2,095,353 - MPMX20_02005 0.41 +0.0
2,095,355 - MPMX20_02005 0.41 -1.8
2,095,383 + MPMX20_02005 0.46 -1.9
2,095,398 - MPMX20_02005 0.48 +0.1
2,095,471 + MPMX20_02005 0.60 -1.9

Or see this region's nucleotide sequence