Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03467

Experiment: M9 plate, Mixed culture; Bacillus megaterium TBS_053 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_03466 and MPMX20_03467 overlap by 4 nucleotidesMPMX20_03467 and MPMX20_03468 are separated by 60 nucleotides MPMX20_03466: MPMX20_03466 - Bifunctional chorismate mutase/prephenate dehydratase, at 3,657,537 to 3,658,697 _03466 MPMX20_03467: MPMX20_03467 - 6-deoxy-6-sulfogluconolactonase, at 3,658,694 to 3,659,566 _03467 MPMX20_03468: MPMX20_03468 - T-protein, at 3,659,627 to 3,660,748 _03468 Position (kb) 3658 3659 3660Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4 5at 3657.709 kb on + strand, within MPMX20_03466at 3657.797 kb on - strand, within MPMX20_03466at 3657.802 kb on - strand, within MPMX20_03466at 3657.844 kb on + strand, within MPMX20_03466at 3657.849 kb on + strand, within MPMX20_03466at 3657.895 kb on - strand, within MPMX20_03466at 3657.899 kb on + strand, within MPMX20_03466at 3657.907 kb on - strand, within MPMX20_03466at 3657.925 kb on + strand, within MPMX20_03466at 3657.986 kb on + strand, within MPMX20_03466at 3658.021 kb on + strand, within MPMX20_03466at 3658.021 kb on + strand, within MPMX20_03466at 3658.058 kb on + strand, within MPMX20_03466at 3658.060 kb on + strand, within MPMX20_03466at 3658.066 kb on - strand, within MPMX20_03466at 3658.068 kb on - strand, within MPMX20_03466at 3658.123 kb on - strand, within MPMX20_03466at 3658.126 kb on + strand, within MPMX20_03466at 3658.152 kb on + strand, within MPMX20_03466at 3658.160 kb on - strand, within MPMX20_03466at 3658.160 kb on - strand, within MPMX20_03466at 3658.160 kb on - strand, within MPMX20_03466at 3658.160 kb on - strand, within MPMX20_03466at 3658.171 kb on + strand, within MPMX20_03466at 3658.178 kb on + strand, within MPMX20_03466at 3658.181 kb on + strand, within MPMX20_03466at 3658.245 kb on - strand, within MPMX20_03466at 3658.245 kb on - strand, within MPMX20_03466at 3658.319 kb on - strand, within MPMX20_03466at 3658.320 kb on + strand, within MPMX20_03466at 3658.380 kb on + strand, within MPMX20_03466at 3658.469 kb on + strand, within MPMX20_03466at 3658.469 kb on + strand, within MPMX20_03466at 3658.477 kb on - strand, within MPMX20_03466at 3658.477 kb on - strand, within MPMX20_03466at 3658.477 kb on - strand, within MPMX20_03466at 3658.477 kb on - strand, within MPMX20_03466at 3658.503 kb on - strand, within MPMX20_03466at 3658.580 kb on - strand, within MPMX20_03466at 3658.689 kb on - strandat 3658.752 kb on - strandat 3658.899 kb on - strand, within MPMX20_03467at 3658.913 kb on - strand, within MPMX20_03467at 3658.977 kb on + strand, within MPMX20_03467at 3658.983 kb on + strand, within MPMX20_03467at 3658.985 kb on - strand, within MPMX20_03467at 3658.985 kb on - strand, within MPMX20_03467at 3658.996 kb on - strand, within MPMX20_03467at 3658.999 kb on + strand, within MPMX20_03467at 3659.007 kb on - strand, within MPMX20_03467at 3659.080 kb on + strand, within MPMX20_03467at 3659.088 kb on - strand, within MPMX20_03467at 3659.088 kb on - strand, within MPMX20_03467at 3659.191 kb on - strand, within MPMX20_03467at 3659.220 kb on - strand, within MPMX20_03467at 3659.223 kb on - strand, within MPMX20_03467at 3659.237 kb on - strand, within MPMX20_03467at 3659.319 kb on + strand, within MPMX20_03467at 3659.376 kb on + strand, within MPMX20_03467at 3659.376 kb on + strand, within MPMX20_03467at 3659.386 kb on + strand, within MPMX20_03467at 3659.386 kb on + strand, within MPMX20_03467at 3659.386 kb on + strand, within MPMX20_03467at 3659.386 kb on + strand, within MPMX20_03467at 3659.396 kb on + strand, within MPMX20_03467at 3659.465 kb on - strand, within MPMX20_03467at 3659.478 kb on + strand, within MPMX20_03467at 3659.478 kb on + strand, within MPMX20_03467at 3659.478 kb on + strand, within MPMX20_03467at 3659.486 kb on - strandat 3659.486 kb on - strandat 3659.486 kb on - strandat 3659.561 kb on + strandat 3659.561 kb on + strandat 3659.569 kb on - strandat 3659.659 kb on - strandat 3659.755 kb on + strand, within MPMX20_03468at 3659.762 kb on + strand, within MPMX20_03468at 3659.763 kb on - strand, within MPMX20_03468at 3659.803 kb on + strand, within MPMX20_03468at 3659.803 kb on + strand, within MPMX20_03468at 3659.803 kb on + strand, within MPMX20_03468at 3659.811 kb on - strand, within MPMX20_03468at 3659.821 kb on - strand, within MPMX20_03468at 3659.851 kb on + strand, within MPMX20_03468at 3659.895 kb on - strand, within MPMX20_03468at 3659.963 kb on + strand, within MPMX20_03468at 3660.022 kb on - strand, within MPMX20_03468at 3660.043 kb on - strand, within MPMX20_03468at 3660.072 kb on - strand, within MPMX20_03468at 3660.074 kb on + strand, within MPMX20_03468at 3660.084 kb on + strand, within MPMX20_03468at 3660.102 kb on + strand, within MPMX20_03468at 3660.115 kb on - strand, within MPMX20_03468at 3660.119 kb on - strand, within MPMX20_03468at 3660.313 kb on - strand, within MPMX20_03468at 3660.334 kb on + strand, within MPMX20_03468at 3660.432 kb on - strand, within MPMX20_03468at 3660.432 kb on - strand, within MPMX20_03468at 3660.529 kb on - strand, within MPMX20_03468

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, Mixed culture; Bacillus megaterium TBS_053 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
remove
3,657,709 + MPMX20_03466 0.15 -4.0
3,657,797 - MPMX20_03466 0.22 -1.0
3,657,802 - MPMX20_03466 0.23 -2.7
3,657,844 + MPMX20_03466 0.26 -4.9
3,657,849 + MPMX20_03466 0.27 -3.8
3,657,895 - MPMX20_03466 0.31 -4.1
3,657,899 + MPMX20_03466 0.31 -5.0
3,657,907 - MPMX20_03466 0.32 -2.5
3,657,925 + MPMX20_03466 0.33 -0.0
3,657,986 + MPMX20_03466 0.39 -1.5
3,658,021 + MPMX20_03466 0.42 -1.8
3,658,021 + MPMX20_03466 0.42 -2.9
3,658,058 + MPMX20_03466 0.45 -3.0
3,658,060 + MPMX20_03466 0.45 +1.2
3,658,066 - MPMX20_03466 0.46 +0.7
3,658,068 - MPMX20_03466 0.46 -3.0
3,658,123 - MPMX20_03466 0.50 -2.0
3,658,126 + MPMX20_03466 0.51 -3.7
3,658,152 + MPMX20_03466 0.53 -1.8
3,658,160 - MPMX20_03466 0.54 -3.0
3,658,160 - MPMX20_03466 0.54 -2.0
3,658,160 - MPMX20_03466 0.54 -3.2
3,658,160 - MPMX20_03466 0.54 -2.5
3,658,171 + MPMX20_03466 0.55 +0.5
3,658,178 + MPMX20_03466 0.55 -1.6
3,658,181 + MPMX20_03466 0.55 -1.5
3,658,245 - MPMX20_03466 0.61 -1.3
3,658,245 - MPMX20_03466 0.61 -1.5
3,658,319 - MPMX20_03466 0.67 -0.8
3,658,320 + MPMX20_03466 0.67 -1.0
3,658,380 + MPMX20_03466 0.73 -0.8
3,658,469 + MPMX20_03466 0.80 -1.3
3,658,469 + MPMX20_03466 0.80 -1.3
3,658,477 - MPMX20_03466 0.81 -3.6
3,658,477 - MPMX20_03466 0.81 -2.4
3,658,477 - MPMX20_03466 0.81 +1.5
3,658,477 - MPMX20_03466 0.81 -2.3
3,658,503 - MPMX20_03466 0.83 -0.5
3,658,580 - MPMX20_03466 0.90 +0.2
3,658,689 - +1.5
3,658,752 - -0.0
3,658,899 - MPMX20_03467 0.23 -0.6
3,658,913 - MPMX20_03467 0.25 -2.4
3,658,977 + MPMX20_03467 0.32 +0.8
3,658,983 + MPMX20_03467 0.33 -1.9
3,658,985 - MPMX20_03467 0.33 +0.5
3,658,985 - MPMX20_03467 0.33 +0.1
3,658,996 - MPMX20_03467 0.35 -1.5
3,658,999 + MPMX20_03467 0.35 -0.0
3,659,007 - MPMX20_03467 0.36 +5.3
3,659,080 + MPMX20_03467 0.44 -0.0
3,659,088 - MPMX20_03467 0.45 -0.3
3,659,088 - MPMX20_03467 0.45 -1.1
3,659,191 - MPMX20_03467 0.57 -0.5
3,659,220 - MPMX20_03467 0.60 +3.6
3,659,223 - MPMX20_03467 0.61 -1.8
3,659,237 - MPMX20_03467 0.62 +2.5
3,659,319 + MPMX20_03467 0.72 +1.5
3,659,376 + MPMX20_03467 0.78 -0.4
3,659,376 + MPMX20_03467 0.78 +0.7
3,659,386 + MPMX20_03467 0.79 +4.7
3,659,386 + MPMX20_03467 0.79 +2.4
3,659,386 + MPMX20_03467 0.79 -0.6
3,659,386 + MPMX20_03467 0.79 -0.0
3,659,396 + MPMX20_03467 0.80 +1.5
3,659,465 - MPMX20_03467 0.88 -0.2
3,659,478 + MPMX20_03467 0.90 +3.2
3,659,478 + MPMX20_03467 0.90 -3.0
3,659,478 + MPMX20_03467 0.90 -0.9
3,659,486 - +0.5
3,659,486 - +0.2
3,659,486 - -2.7
3,659,561 + +0.5
3,659,561 + +0.2
3,659,569 - +0.3
3,659,659 - -2.0
3,659,755 + MPMX20_03468 0.11 -2.5
3,659,762 + MPMX20_03468 0.12 -1.1
3,659,763 - MPMX20_03468 0.12 +0.5
3,659,803 + MPMX20_03468 0.16 -1.0
3,659,803 + MPMX20_03468 0.16 +0.3
3,659,803 + MPMX20_03468 0.16 +0.5
3,659,811 - MPMX20_03468 0.16 -2.6
3,659,821 - MPMX20_03468 0.17 -3.0
3,659,851 + MPMX20_03468 0.20 -3.9
3,659,895 - MPMX20_03468 0.24 -2.5
3,659,963 + MPMX20_03468 0.30 -2.7
3,660,022 - MPMX20_03468 0.35 -2.9
3,660,043 - MPMX20_03468 0.37 -3.5
3,660,072 - MPMX20_03468 0.40 -1.5
3,660,074 + MPMX20_03468 0.40 -0.5
3,660,084 + MPMX20_03468 0.41 -1.2
3,660,102 + MPMX20_03468 0.42 -1.3
3,660,115 - MPMX20_03468 0.43 -3.6
3,660,119 - MPMX20_03468 0.44 -3.2
3,660,313 - MPMX20_03468 0.61 -4.4
3,660,334 + MPMX20_03468 0.63 -1.9
3,660,432 - MPMX20_03468 0.72 -1.3
3,660,432 - MPMX20_03468 0.72 -2.3
3,660,529 - MPMX20_03468 0.80 -3.2

Or see this region's nucleotide sequence