Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00219

Experiment: M9 plate, Mixed culture; Bacillus megaterium TBS_053 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_00217 and MPMX20_00218 are separated by 286 nucleotidesMPMX20_00218 and MPMX20_00219 are separated by 95 nucleotidesMPMX20_00219 and MPMX20_00220 are separated by 38 nucleotides MPMX20_00217: MPMX20_00217 - Phosphomethylpyrimidine synthase, at 225,671 to 227,566 _00217 MPMX20_00218: MPMX20_00218 - Regulator of sigma D, at 227,853 to 228,350 _00218 MPMX20_00219: MPMX20_00219 - NADH pyrophosphatase, at 228,446 to 229,219 _00219 MPMX20_00220: MPMX20_00220 - Uroporphyrinogen decarboxylase, at 229,258 to 230,322 _00220 Position (kb) 228 229 230Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 227.497 kb on + strandat 227.505 kb on - strandat 227.505 kb on - strandat 227.536 kb on + strandat 227.544 kb on - strandat 227.561 kb on + strandat 227.571 kb on - strandat 227.589 kb on - strandat 227.647 kb on - strandat 227.678 kb on + strandat 227.681 kb on - strandat 227.681 kb on - strandat 227.683 kb on + strandat 227.712 kb on + strandat 227.712 kb on + strandat 227.725 kb on + strandat 227.811 kb on - strandat 227.814 kb on + strandat 227.814 kb on - strandat 227.862 kb on - strandat 227.928 kb on - strand, within MPMX20_00218at 227.970 kb on - strand, within MPMX20_00218at 227.970 kb on - strand, within MPMX20_00218at 227.989 kb on + strand, within MPMX20_00218at 227.992 kb on - strand, within MPMX20_00218at 227.997 kb on + strand, within MPMX20_00218at 228.058 kb on + strand, within MPMX20_00218at 228.070 kb on + strand, within MPMX20_00218at 228.098 kb on + strand, within MPMX20_00218at 228.098 kb on + strand, within MPMX20_00218at 228.167 kb on - strand, within MPMX20_00218at 228.174 kb on - strand, within MPMX20_00218at 228.230 kb on + strand, within MPMX20_00218at 228.230 kb on + strand, within MPMX20_00218at 228.230 kb on + strand, within MPMX20_00218at 228.230 kb on + strand, within MPMX20_00218at 228.230 kb on + strand, within MPMX20_00218at 228.230 kb on + strand, within MPMX20_00218at 228.230 kb on + strand, within MPMX20_00218at 228.238 kb on - strand, within MPMX20_00218at 228.238 kb on - strand, within MPMX20_00218at 228.238 kb on - strand, within MPMX20_00218at 228.238 kb on - strand, within MPMX20_00218at 228.238 kb on - strand, within MPMX20_00218at 228.238 kb on - strand, within MPMX20_00218at 228.238 kb on - strand, within MPMX20_00218at 228.238 kb on - strand, within MPMX20_00218at 228.238 kb on - strand, within MPMX20_00218at 228.238 kb on - strand, within MPMX20_00218at 228.238 kb on - strand, within MPMX20_00218at 228.238 kb on - strand, within MPMX20_00218at 228.238 kb on - strand, within MPMX20_00218at 228.238 kb on - strand, within MPMX20_00218at 228.238 kb on - strand, within MPMX20_00218at 228.238 kb on - strand, within MPMX20_00218at 228.238 kb on - strand, within MPMX20_00218at 228.238 kb on - strand, within MPMX20_00218at 228.238 kb on - strand, within MPMX20_00218at 228.262 kb on + strand, within MPMX20_00218at 228.269 kb on - strand, within MPMX20_00218at 228.270 kb on - strand, within MPMX20_00218at 228.270 kb on - strand, within MPMX20_00218at 228.273 kb on + strand, within MPMX20_00218at 228.278 kb on + strand, within MPMX20_00218at 228.278 kb on + strand, within MPMX20_00218at 228.278 kb on + strand, within MPMX20_00218at 228.286 kb on - strand, within MPMX20_00218at 228.286 kb on - strand, within MPMX20_00218at 228.286 kb on - strand, within MPMX20_00218at 228.286 kb on - strand, within MPMX20_00218at 228.286 kb on - strand, within MPMX20_00218at 228.310 kb on + strandat 228.341 kb on + strandat 228.341 kb on + strandat 228.349 kb on + strandat 228.366 kb on + strandat 228.366 kb on + strandat 228.366 kb on + strandat 228.366 kb on + strandat 228.366 kb on + strandat 228.374 kb on - strandat 228.374 kb on - strandat 228.394 kb on - strandat 228.406 kb on + strandat 228.406 kb on + strandat 228.417 kb on - strandat 228.425 kb on + strandat 228.433 kb on - strandat 228.433 kb on - strandat 228.433 kb on - strandat 228.435 kb on + strandat 228.470 kb on + strandat 228.531 kb on + strand, within MPMX20_00219at 228.532 kb on + strand, within MPMX20_00219at 228.538 kb on - strand, within MPMX20_00219at 228.538 kb on - strand, within MPMX20_00219at 228.538 kb on - strand, within MPMX20_00219at 228.605 kb on + strand, within MPMX20_00219at 228.671 kb on - strand, within MPMX20_00219at 228.699 kb on + strand, within MPMX20_00219at 228.707 kb on - strand, within MPMX20_00219at 228.756 kb on + strand, within MPMX20_00219at 228.758 kb on - strand, within MPMX20_00219at 228.764 kb on - strand, within MPMX20_00219at 228.766 kb on + strand, within MPMX20_00219at 228.774 kb on - strand, within MPMX20_00219at 228.788 kb on - strand, within MPMX20_00219at 228.790 kb on - strand, within MPMX20_00219at 228.946 kb on + strand, within MPMX20_00219at 228.968 kb on - strand, within MPMX20_00219at 228.977 kb on - strand, within MPMX20_00219at 228.992 kb on - strand, within MPMX20_00219at 229.003 kb on + strand, within MPMX20_00219at 229.014 kb on + strand, within MPMX20_00219at 229.014 kb on + strand, within MPMX20_00219at 229.022 kb on - strand, within MPMX20_00219at 229.198 kb on + strandat 229.209 kb on + strandat 229.210 kb on + strandat 229.219 kb on + strandat 229.219 kb on + strandat 229.227 kb on - strandat 229.227 kb on - strandat 229.227 kb on - strandat 229.227 kb on - strandat 229.227 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, Mixed culture; Bacillus megaterium TBS_053 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
remove
227,497 + +0.5
227,505 - -2.5
227,505 - -0.8
227,536 + -0.9
227,544 - +4.4
227,561 + -1.5
227,571 - +0.7
227,589 - -0.5
227,647 - -1.2
227,678 + -0.0
227,681 - +0.8
227,681 - -1.6
227,683 + +0.5
227,712 + -1.3
227,712 + -1.3
227,725 + -0.9
227,811 - -1.0
227,814 + -0.5
227,814 - -1.0
227,862 - -0.0
227,928 - MPMX20_00218 0.15 -2.2
227,970 - MPMX20_00218 0.23 +4.8
227,970 - MPMX20_00218 0.23 +0.8
227,989 + MPMX20_00218 0.27 -0.0
227,992 - MPMX20_00218 0.28 -1.3
227,997 + MPMX20_00218 0.29 -0.2
228,058 + MPMX20_00218 0.41 -1.5
228,070 + MPMX20_00218 0.44 +1.5
228,098 + MPMX20_00218 0.49 -1.0
228,098 + MPMX20_00218 0.49 +0.9
228,167 - MPMX20_00218 0.63 -1.0
228,174 - MPMX20_00218 0.64 -1.3
228,230 + MPMX20_00218 0.76 +0.3
228,230 + MPMX20_00218 0.76 +0.1
228,230 + MPMX20_00218 0.76 -1.6
228,230 + MPMX20_00218 0.76 -1.0
228,230 + MPMX20_00218 0.76 +0.2
228,230 + MPMX20_00218 0.76 -0.2
228,230 + MPMX20_00218 0.76 +0.5
228,238 - MPMX20_00218 0.77 +2.8
228,238 - MPMX20_00218 0.77 +1.5
228,238 - MPMX20_00218 0.77 -1.2
228,238 - MPMX20_00218 0.77 +0.3
228,238 - MPMX20_00218 0.77 -2.5
228,238 - MPMX20_00218 0.77 -0.8
228,238 - MPMX20_00218 0.77 +0.5
228,238 - MPMX20_00218 0.77 -0.6
228,238 - MPMX20_00218 0.77 -0.8
228,238 - MPMX20_00218 0.77 -1.5
228,238 - MPMX20_00218 0.77 -1.9
228,238 - MPMX20_00218 0.77 -0.4
228,238 - MPMX20_00218 0.77 -0.5
228,238 - MPMX20_00218 0.77 +3.1
228,238 - MPMX20_00218 0.77 +0.1
228,238 - MPMX20_00218 0.77 -1.8
228,238 - MPMX20_00218 0.77 +0.1
228,238 - MPMX20_00218 0.77 +1.1
228,238 - MPMX20_00218 0.77 -2.2
228,262 + MPMX20_00218 0.82 +1.4
228,269 - MPMX20_00218 0.84 +0.0
228,270 - MPMX20_00218 0.84 +1.6
228,270 - MPMX20_00218 0.84 +1.5
228,273 + MPMX20_00218 0.84 -2.0
228,278 + MPMX20_00218 0.85 -0.5
228,278 + MPMX20_00218 0.85 -0.5
228,278 + MPMX20_00218 0.85 +1.5
228,286 - MPMX20_00218 0.87 -0.2
228,286 - MPMX20_00218 0.87 -0.0
228,286 - MPMX20_00218 0.87 -0.0
228,286 - MPMX20_00218 0.87 -0.6
228,286 - MPMX20_00218 0.87 +1.2
228,310 + -0.8
228,341 + -1.6
228,341 + -0.0
228,349 + -1.0
228,366 + +2.0
228,366 + -0.0
228,366 + +0.8
228,366 + -2.0
228,366 + +0.4
228,374 - +0.1
228,374 - -0.8
228,394 - -1.5
228,406 + +0.3
228,406 + +0.3
228,417 - +1.1
228,425 + +0.7
228,433 - -1.6
228,433 - +0.5
228,433 - -1.6
228,435 + -0.1
228,470 + +0.1
228,531 + MPMX20_00219 0.11 -0.0
228,532 + MPMX20_00219 0.11 -0.0
228,538 - MPMX20_00219 0.12 +2.1
228,538 - MPMX20_00219 0.12 -0.6
228,538 - MPMX20_00219 0.12 -0.6
228,605 + MPMX20_00219 0.21 -0.9
228,671 - MPMX20_00219 0.29 +1.2
228,699 + MPMX20_00219 0.33 -0.2
228,707 - MPMX20_00219 0.34 -0.5
228,756 + MPMX20_00219 0.40 +0.5
228,758 - MPMX20_00219 0.40 +1.5
228,764 - MPMX20_00219 0.41 +0.5
228,766 + MPMX20_00219 0.41 +1.4
228,774 - MPMX20_00219 0.42 +0.4
228,788 - MPMX20_00219 0.44 -1.1
228,790 - MPMX20_00219 0.44 -0.7
228,946 + MPMX20_00219 0.65 -0.8
228,968 - MPMX20_00219 0.67 +1.1
228,977 - MPMX20_00219 0.69 +0.2
228,992 - MPMX20_00219 0.71 -0.1
229,003 + MPMX20_00219 0.72 +1.8
229,014 + MPMX20_00219 0.73 +0.7
229,014 + MPMX20_00219 0.73 +0.8
229,022 - MPMX20_00219 0.74 -0.2
229,198 + -0.9
229,209 + -1.0
229,210 + +2.6
229,219 + +1.5
229,219 + -0.8
229,227 - +1.1
229,227 - -0.5
229,227 - +0.0
229,227 - -0.4
229,227 - +1.4

Or see this region's nucleotide sequence