Experiment: 1X LB plate, Mixed culture; Bacillus megaterium TBS_053 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03277 and MPMX20_03278 are separated by 228 nucleotides MPMX20_03278 and MPMX20_03279 are separated by 47 nucleotides MPMX20_03279 and MPMX20_03280 are separated by 13 nucleotides MPMX20_03280 and MPMX20_03281 are separated by 32 nucleotides
MPMX20_03277: MPMX20_03277 - Glutamate-pyruvate aminotransferase AlaC, at 3,448,646 to 3,449,884
_03277
MPMX20_03278: MPMX20_03278 - hypothetical protein, at 3,450,113 to 3,450,241
_03278
MPMX20_03279: MPMX20_03279 - Sensor histidine kinase YpdA, at 3,450,289 to 3,451,968
_03279
MPMX20_03280: MPMX20_03280 - Transcriptional regulatory protein YpdB, at 3,451,982 to 3,452,713
_03280
MPMX20_03281: MPMX20_03281 - Glucokinase, at 3,452,746 to 3,453,711
_03281
Position (kb)
3450
3451
3452 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5 at 3449.432 kb on - strand, within MPMX20_03277 at 3449.455 kb on - strand, within MPMX20_03277 at 3449.514 kb on + strand, within MPMX20_03277 at 3449.620 kb on + strand, within MPMX20_03277 at 3449.620 kb on + strand, within MPMX20_03277 at 3449.653 kb on + strand, within MPMX20_03277 at 3449.668 kb on + strand, within MPMX20_03277 at 3449.706 kb on + strand, within MPMX20_03277 at 3449.742 kb on - strand, within MPMX20_03277 at 3449.748 kb on + strand, within MPMX20_03277 at 3449.748 kb on + strand, within MPMX20_03277 at 3449.814 kb on - strand at 3449.814 kb on - strand at 3449.819 kb on + strand at 3449.868 kb on + strand at 3449.876 kb on - strand at 3449.903 kb on - strand at 3449.939 kb on - strand at 3450.046 kb on + strand at 3450.068 kb on - strand at 3450.142 kb on + strand, within MPMX20_03278 at 3450.142 kb on + strand, within MPMX20_03278 at 3450.160 kb on - strand, within MPMX20_03278 at 3450.194 kb on + strand, within MPMX20_03278 at 3450.206 kb on - strand, within MPMX20_03278 at 3450.265 kb on - strand at 3450.265 kb on - strand at 3450.325 kb on - strand at 3450.380 kb on + strand at 3450.388 kb on - strand at 3450.388 kb on - strand at 3450.392 kb on + strand at 3450.400 kb on - strand at 3450.423 kb on - strand at 3450.424 kb on - strand at 3450.441 kb on + strand at 3450.449 kb on - strand at 3450.452 kb on + strand at 3450.527 kb on + strand, within MPMX20_03279 at 3450.562 kb on + strand, within MPMX20_03279 at 3450.646 kb on + strand, within MPMX20_03279 at 3450.650 kb on - strand, within MPMX20_03279 at 3450.711 kb on - strand, within MPMX20_03279 at 3450.733 kb on - strand, within MPMX20_03279 at 3450.797 kb on + strand, within MPMX20_03279 at 3450.824 kb on + strand, within MPMX20_03279 at 3450.867 kb on + strand, within MPMX20_03279 at 3450.867 kb on + strand, within MPMX20_03279 at 3450.933 kb on - strand, within MPMX20_03279 at 3450.937 kb on - strand, within MPMX20_03279 at 3451.029 kb on + strand, within MPMX20_03279 at 3451.029 kb on + strand, within MPMX20_03279 at 3451.076 kb on + strand, within MPMX20_03279 at 3451.091 kb on + strand, within MPMX20_03279 at 3451.237 kb on + strand, within MPMX20_03279 at 3451.245 kb on - strand, within MPMX20_03279 at 3451.255 kb on - strand, within MPMX20_03279 at 3451.263 kb on - strand, within MPMX20_03279 at 3451.263 kb on - strand, within MPMX20_03279 at 3451.284 kb on + strand, within MPMX20_03279 at 3451.286 kb on - strand, within MPMX20_03279 at 3451.292 kb on - strand, within MPMX20_03279 at 3451.292 kb on - strand, within MPMX20_03279 at 3451.318 kb on + strand, within MPMX20_03279 at 3451.343 kb on + strand, within MPMX20_03279 at 3451.358 kb on + strand, within MPMX20_03279 at 3451.360 kb on + strand, within MPMX20_03279 at 3451.368 kb on - strand, within MPMX20_03279 at 3451.429 kb on + strand, within MPMX20_03279 at 3451.437 kb on - strand, within MPMX20_03279 at 3451.437 kb on - strand, within MPMX20_03279 at 3451.453 kb on + strand, within MPMX20_03279 at 3451.484 kb on + strand, within MPMX20_03279 at 3451.484 kb on + strand, within MPMX20_03279 at 3451.487 kb on - strand, within MPMX20_03279 at 3451.492 kb on - strand, within MPMX20_03279 at 3451.492 kb on - strand, within MPMX20_03279 at 3451.492 kb on - strand, within MPMX20_03279 at 3451.497 kb on - strand, within MPMX20_03279 at 3451.502 kb on - strand, within MPMX20_03279 at 3451.507 kb on - strand, within MPMX20_03279 at 3451.542 kb on + strand, within MPMX20_03279 at 3451.567 kb on + strand, within MPMX20_03279 at 3451.571 kb on - strand, within MPMX20_03279 at 3451.589 kb on - strand, within MPMX20_03279 at 3451.589 kb on - strand, within MPMX20_03279 at 3451.617 kb on - strand, within MPMX20_03279 at 3451.619 kb on - strand, within MPMX20_03279 at 3451.625 kb on + strand, within MPMX20_03279 at 3451.625 kb on + strand, within MPMX20_03279 at 3451.631 kb on - strand, within MPMX20_03279 at 3451.633 kb on - strand, within MPMX20_03279 at 3451.666 kb on + strand, within MPMX20_03279 at 3451.673 kb on + strand, within MPMX20_03279 at 3451.681 kb on - strand, within MPMX20_03279 at 3451.697 kb on - strand, within MPMX20_03279 at 3451.698 kb on - strand, within MPMX20_03279 at 3451.698 kb on - strand, within MPMX20_03279 at 3451.702 kb on + strand, within MPMX20_03279 at 3451.712 kb on + strand, within MPMX20_03279 at 3451.733 kb on - strand, within MPMX20_03279 at 3451.791 kb on + strand, within MPMX20_03279 at 3451.797 kb on + strand, within MPMX20_03279 at 3451.805 kb on - strand at 3451.820 kb on + strand at 3451.830 kb on + strand at 3451.836 kb on - strand at 3451.848 kb on + strand at 3451.963 kb on + strand at 3452.029 kb on + strand at 3452.081 kb on - strand, within MPMX20_03280 at 3452.081 kb on - strand, within MPMX20_03280 at 3452.084 kb on + strand, within MPMX20_03280 at 3452.085 kb on + strand, within MPMX20_03280 at 3452.085 kb on + strand, within MPMX20_03280 at 3452.085 kb on + strand, within MPMX20_03280 at 3452.085 kb on + strand, within MPMX20_03280 at 3452.092 kb on - strand, within MPMX20_03280 at 3452.092 kb on - strand, within MPMX20_03280 at 3452.092 kb on - strand, within MPMX20_03280 at 3452.092 kb on - strand, within MPMX20_03280 at 3452.093 kb on - strand, within MPMX20_03280 at 3452.093 kb on - strand, within MPMX20_03280 at 3452.093 kb on - strand, within MPMX20_03280 at 3452.163 kb on + strand, within MPMX20_03280 at 3452.171 kb on - strand, within MPMX20_03280 at 3452.249 kb on - strand, within MPMX20_03280 at 3452.251 kb on - strand, within MPMX20_03280 at 3452.251 kb on - strand, within MPMX20_03280 at 3452.323 kb on + strand, within MPMX20_03280 at 3452.355 kb on - strand, within MPMX20_03280 at 3452.355 kb on - strand, within MPMX20_03280 at 3452.391 kb on + strand, within MPMX20_03280 at 3452.391 kb on + strand, within MPMX20_03280 at 3452.399 kb on - strand, within MPMX20_03280 at 3452.399 kb on - strand, within MPMX20_03280 at 3452.399 kb on - strand, within MPMX20_03280 at 3452.399 kb on - strand, within MPMX20_03280 at 3452.759 kb on - strand at 3452.783 kb on - strand at 3452.783 kb on - strand at 3452.796 kb on + strand at 3452.796 kb on + strand at 3452.801 kb on + strand at 3452.809 kb on - strand at 3452.828 kb on + strand at 3452.833 kb on + strand at 3452.892 kb on - strand, within MPMX20_03281 at 3452.892 kb on - strand, within MPMX20_03281 at 3452.942 kb on + strand, within MPMX20_03281 at 3452.953 kb on + strand, within MPMX20_03281
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, Mixed culture; Bacillus megaterium TBS_053 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 3,449,432 - MPMX20_03277 0.63 +0.8 3,449,455 - MPMX20_03277 0.65 +0.8 3,449,514 + MPMX20_03277 0.70 -1.0 3,449,620 + MPMX20_03277 0.79 +0.1 3,449,620 + MPMX20_03277 0.79 -0.2 3,449,653 + MPMX20_03277 0.81 -0.9 3,449,668 + MPMX20_03277 0.82 -0.7 3,449,706 + MPMX20_03277 0.86 -0.2 3,449,742 - MPMX20_03277 0.88 -0.3 3,449,748 + MPMX20_03277 0.89 -1.5 3,449,748 + MPMX20_03277 0.89 +0.8 3,449,814 - -0.8 3,449,814 - -2.1 3,449,819 + +1.6 3,449,868 + -0.2 3,449,876 - -0.6 3,449,903 - -1.7 3,449,939 - +0.5 3,450,046 + +1.0 3,450,068 - -0.6 3,450,142 + MPMX20_03278 0.22 -1.6 3,450,142 + MPMX20_03278 0.22 +5.4 3,450,160 - MPMX20_03278 0.36 +0.1 3,450,194 + MPMX20_03278 0.63 +0.0 3,450,206 - MPMX20_03278 0.72 -0.2 3,450,265 - -2.0 3,450,265 - -0.2 3,450,325 - +0.4 3,450,380 + -0.1 3,450,388 - +1.1 3,450,388 - -0.7 3,450,392 + -0.6 3,450,400 - +0.7 3,450,423 - -0.6 3,450,424 - -0.4 3,450,441 + -0.5 3,450,449 - -1.2 3,450,452 + +1.0 3,450,527 + MPMX20_03279 0.14 -1.0 3,450,562 + MPMX20_03279 0.16 +0.0 3,450,646 + MPMX20_03279 0.21 +0.8 3,450,650 - MPMX20_03279 0.21 -0.3 3,450,711 - MPMX20_03279 0.25 +0.7 3,450,733 - MPMX20_03279 0.26 -1.1 3,450,797 + MPMX20_03279 0.30 +1.2 3,450,824 + MPMX20_03279 0.32 -0.2 3,450,867 + MPMX20_03279 0.34 +0.7 3,450,867 + MPMX20_03279 0.34 -0.2 3,450,933 - MPMX20_03279 0.38 +0.4 3,450,937 - MPMX20_03279 0.39 +0.3 3,451,029 + MPMX20_03279 0.44 -1.0 3,451,029 + MPMX20_03279 0.44 +0.8 3,451,076 + MPMX20_03279 0.47 -0.0 3,451,091 + MPMX20_03279 0.48 -0.2 3,451,237 + MPMX20_03279 0.56 +0.6 3,451,245 - MPMX20_03279 0.57 -0.3 3,451,255 - MPMX20_03279 0.57 -1.6 3,451,263 - MPMX20_03279 0.58 +0.5 3,451,263 - MPMX20_03279 0.58 -0.9 3,451,284 + MPMX20_03279 0.59 -0.5 3,451,286 - MPMX20_03279 0.59 -1.9 3,451,292 - MPMX20_03279 0.60 +1.4 3,451,292 - MPMX20_03279 0.60 -1.1 3,451,318 + MPMX20_03279 0.61 +0.0 3,451,343 + MPMX20_03279 0.63 -0.7 3,451,358 + MPMX20_03279 0.64 -1.4 3,451,360 + MPMX20_03279 0.64 -0.3 3,451,368 - MPMX20_03279 0.64 -1.9 3,451,429 + MPMX20_03279 0.68 +1.7 3,451,437 - MPMX20_03279 0.68 -0.2 3,451,437 - MPMX20_03279 0.68 -2.0 3,451,453 + MPMX20_03279 0.69 +0.4 3,451,484 + MPMX20_03279 0.71 -0.4 3,451,484 + MPMX20_03279 0.71 +0.4 3,451,487 - MPMX20_03279 0.71 -0.6 3,451,492 - MPMX20_03279 0.72 +0.6 3,451,492 - MPMX20_03279 0.72 +0.4 3,451,492 - MPMX20_03279 0.72 -0.6 3,451,497 - MPMX20_03279 0.72 -0.3 3,451,502 - MPMX20_03279 0.72 -1.0 3,451,507 - MPMX20_03279 0.72 -0.8 3,451,542 + MPMX20_03279 0.75 -1.2 3,451,567 + MPMX20_03279 0.76 -0.4 3,451,571 - MPMX20_03279 0.76 -0.5 3,451,589 - MPMX20_03279 0.77 +0.2 3,451,589 - MPMX20_03279 0.77 -0.2 3,451,617 - MPMX20_03279 0.79 +1.8 3,451,619 - MPMX20_03279 0.79 -1.2 3,451,625 + MPMX20_03279 0.80 -0.4 3,451,625 + MPMX20_03279 0.80 -0.3 3,451,631 - MPMX20_03279 0.80 +0.7 3,451,633 - MPMX20_03279 0.80 +0.3 3,451,666 + MPMX20_03279 0.82 -0.8 3,451,673 + MPMX20_03279 0.82 +2.3 3,451,681 - MPMX20_03279 0.83 +0.4 3,451,697 - MPMX20_03279 0.84 +0.3 3,451,698 - MPMX20_03279 0.84 -0.9 3,451,698 - MPMX20_03279 0.84 -1.5 3,451,702 + MPMX20_03279 0.84 +0.2 3,451,712 + MPMX20_03279 0.85 +0.4 3,451,733 - MPMX20_03279 0.86 -0.8 3,451,791 + MPMX20_03279 0.89 -0.1 3,451,797 + MPMX20_03279 0.90 -1.0 3,451,805 - +0.1 3,451,820 + +0.3 3,451,830 + +1.4 3,451,836 - +0.2 3,451,848 + -0.8 3,451,963 + -0.1 3,452,029 + -0.1 3,452,081 - MPMX20_03280 0.14 -0.2 3,452,081 - MPMX20_03280 0.14 +0.2 3,452,084 + MPMX20_03280 0.14 +0.1 3,452,085 + MPMX20_03280 0.14 +0.3 3,452,085 + MPMX20_03280 0.14 -1.1 3,452,085 + MPMX20_03280 0.14 -0.3 3,452,085 + MPMX20_03280 0.14 -0.5 3,452,092 - MPMX20_03280 0.15 -0.4 3,452,092 - MPMX20_03280 0.15 +1.4 3,452,092 - MPMX20_03280 0.15 -0.2 3,452,092 - MPMX20_03280 0.15 +0.9 3,452,093 - MPMX20_03280 0.15 +0.9 3,452,093 - MPMX20_03280 0.15 -0.7 3,452,093 - MPMX20_03280 0.15 -1.3 3,452,163 + MPMX20_03280 0.25 +0.1 3,452,171 - MPMX20_03280 0.26 -1.2 3,452,249 - MPMX20_03280 0.36 -1.2 3,452,251 - MPMX20_03280 0.37 -1.6 3,452,251 - MPMX20_03280 0.37 +0.4 3,452,323 + MPMX20_03280 0.47 +0.4 3,452,355 - MPMX20_03280 0.51 +1.3 3,452,355 - MPMX20_03280 0.51 +0.3 3,452,391 + MPMX20_03280 0.56 -0.3 3,452,391 + MPMX20_03280 0.56 -1.3 3,452,399 - MPMX20_03280 0.57 -0.6 3,452,399 - MPMX20_03280 0.57 -0.1 3,452,399 - MPMX20_03280 0.57 +0.2 3,452,399 - MPMX20_03280 0.57 +0.4 3,452,759 - +0.2 3,452,783 - -0.8 3,452,783 - -1.6 3,452,796 + -1.0 3,452,796 + -1.1 3,452,801 + +1.4 3,452,809 - -0.1 3,452,828 + -0.6 3,452,833 + -0.3 3,452,892 - MPMX20_03281 0.15 -0.2 3,452,892 - MPMX20_03281 0.15 -0.4 3,452,942 + MPMX20_03281 0.20 +1.4 3,452,953 + MPMX20_03281 0.21 -0.6
Or see this region's nucleotide sequence