Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03279

Experiment: 1X LB plate, Mixed culture; Bacillus megaterium TBS_053 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03277 and MPMX20_03278 are separated by 228 nucleotidesMPMX20_03278 and MPMX20_03279 are separated by 47 nucleotidesMPMX20_03279 and MPMX20_03280 are separated by 13 nucleotidesMPMX20_03280 and MPMX20_03281 are separated by 32 nucleotides MPMX20_03277: MPMX20_03277 - Glutamate-pyruvate aminotransferase AlaC, at 3,448,646 to 3,449,884 _03277 MPMX20_03278: MPMX20_03278 - hypothetical protein, at 3,450,113 to 3,450,241 _03278 MPMX20_03279: MPMX20_03279 - Sensor histidine kinase YpdA, at 3,450,289 to 3,451,968 _03279 MPMX20_03280: MPMX20_03280 - Transcriptional regulatory protein YpdB, at 3,451,982 to 3,452,713 _03280 MPMX20_03281: MPMX20_03281 - Glucokinase, at 3,452,746 to 3,453,711 _03281 Position (kb) 3450 3451 3452Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 3449.432 kb on - strand, within MPMX20_03277at 3449.455 kb on - strand, within MPMX20_03277at 3449.514 kb on + strand, within MPMX20_03277at 3449.620 kb on + strand, within MPMX20_03277at 3449.620 kb on + strand, within MPMX20_03277at 3449.653 kb on + strand, within MPMX20_03277at 3449.668 kb on + strand, within MPMX20_03277at 3449.706 kb on + strand, within MPMX20_03277at 3449.742 kb on - strand, within MPMX20_03277at 3449.748 kb on + strand, within MPMX20_03277at 3449.748 kb on + strand, within MPMX20_03277at 3449.814 kb on - strandat 3449.814 kb on - strandat 3449.819 kb on + strandat 3449.868 kb on + strandat 3449.876 kb on - strandat 3449.903 kb on - strandat 3449.939 kb on - strandat 3450.046 kb on + strandat 3450.068 kb on - strandat 3450.142 kb on + strand, within MPMX20_03278at 3450.142 kb on + strand, within MPMX20_03278at 3450.160 kb on - strand, within MPMX20_03278at 3450.194 kb on + strand, within MPMX20_03278at 3450.206 kb on - strand, within MPMX20_03278at 3450.265 kb on - strandat 3450.265 kb on - strandat 3450.325 kb on - strandat 3450.380 kb on + strandat 3450.388 kb on - strandat 3450.388 kb on - strandat 3450.392 kb on + strandat 3450.400 kb on - strandat 3450.423 kb on - strandat 3450.424 kb on - strandat 3450.441 kb on + strandat 3450.449 kb on - strandat 3450.452 kb on + strandat 3450.527 kb on + strand, within MPMX20_03279at 3450.562 kb on + strand, within MPMX20_03279at 3450.646 kb on + strand, within MPMX20_03279at 3450.650 kb on - strand, within MPMX20_03279at 3450.711 kb on - strand, within MPMX20_03279at 3450.733 kb on - strand, within MPMX20_03279at 3450.797 kb on + strand, within MPMX20_03279at 3450.824 kb on + strand, within MPMX20_03279at 3450.867 kb on + strand, within MPMX20_03279at 3450.867 kb on + strand, within MPMX20_03279at 3450.933 kb on - strand, within MPMX20_03279at 3450.937 kb on - strand, within MPMX20_03279at 3451.029 kb on + strand, within MPMX20_03279at 3451.029 kb on + strand, within MPMX20_03279at 3451.076 kb on + strand, within MPMX20_03279at 3451.091 kb on + strand, within MPMX20_03279at 3451.237 kb on + strand, within MPMX20_03279at 3451.245 kb on - strand, within MPMX20_03279at 3451.255 kb on - strand, within MPMX20_03279at 3451.263 kb on - strand, within MPMX20_03279at 3451.263 kb on - strand, within MPMX20_03279at 3451.284 kb on + strand, within MPMX20_03279at 3451.286 kb on - strand, within MPMX20_03279at 3451.292 kb on - strand, within MPMX20_03279at 3451.292 kb on - strand, within MPMX20_03279at 3451.318 kb on + strand, within MPMX20_03279at 3451.343 kb on + strand, within MPMX20_03279at 3451.358 kb on + strand, within MPMX20_03279at 3451.360 kb on + strand, within MPMX20_03279at 3451.368 kb on - strand, within MPMX20_03279at 3451.429 kb on + strand, within MPMX20_03279at 3451.437 kb on - strand, within MPMX20_03279at 3451.437 kb on - strand, within MPMX20_03279at 3451.453 kb on + strand, within MPMX20_03279at 3451.484 kb on + strand, within MPMX20_03279at 3451.484 kb on + strand, within MPMX20_03279at 3451.487 kb on - strand, within MPMX20_03279at 3451.492 kb on - strand, within MPMX20_03279at 3451.492 kb on - strand, within MPMX20_03279at 3451.492 kb on - strand, within MPMX20_03279at 3451.497 kb on - strand, within MPMX20_03279at 3451.502 kb on - strand, within MPMX20_03279at 3451.507 kb on - strand, within MPMX20_03279at 3451.542 kb on + strand, within MPMX20_03279at 3451.567 kb on + strand, within MPMX20_03279at 3451.571 kb on - strand, within MPMX20_03279at 3451.589 kb on - strand, within MPMX20_03279at 3451.589 kb on - strand, within MPMX20_03279at 3451.617 kb on - strand, within MPMX20_03279at 3451.619 kb on - strand, within MPMX20_03279at 3451.625 kb on + strand, within MPMX20_03279at 3451.625 kb on + strand, within MPMX20_03279at 3451.631 kb on - strand, within MPMX20_03279at 3451.633 kb on - strand, within MPMX20_03279at 3451.666 kb on + strand, within MPMX20_03279at 3451.673 kb on + strand, within MPMX20_03279at 3451.681 kb on - strand, within MPMX20_03279at 3451.697 kb on - strand, within MPMX20_03279at 3451.698 kb on - strand, within MPMX20_03279at 3451.698 kb on - strand, within MPMX20_03279at 3451.702 kb on + strand, within MPMX20_03279at 3451.712 kb on + strand, within MPMX20_03279at 3451.733 kb on - strand, within MPMX20_03279at 3451.791 kb on + strand, within MPMX20_03279at 3451.797 kb on + strand, within MPMX20_03279at 3451.805 kb on - strandat 3451.820 kb on + strandat 3451.830 kb on + strandat 3451.836 kb on - strandat 3451.848 kb on + strandat 3451.963 kb on + strandat 3452.029 kb on + strandat 3452.081 kb on - strand, within MPMX20_03280at 3452.081 kb on - strand, within MPMX20_03280at 3452.084 kb on + strand, within MPMX20_03280at 3452.085 kb on + strand, within MPMX20_03280at 3452.085 kb on + strand, within MPMX20_03280at 3452.085 kb on + strand, within MPMX20_03280at 3452.085 kb on + strand, within MPMX20_03280at 3452.092 kb on - strand, within MPMX20_03280at 3452.092 kb on - strand, within MPMX20_03280at 3452.092 kb on - strand, within MPMX20_03280at 3452.092 kb on - strand, within MPMX20_03280at 3452.093 kb on - strand, within MPMX20_03280at 3452.093 kb on - strand, within MPMX20_03280at 3452.093 kb on - strand, within MPMX20_03280at 3452.163 kb on + strand, within MPMX20_03280at 3452.171 kb on - strand, within MPMX20_03280at 3452.249 kb on - strand, within MPMX20_03280at 3452.251 kb on - strand, within MPMX20_03280at 3452.251 kb on - strand, within MPMX20_03280at 3452.323 kb on + strand, within MPMX20_03280at 3452.355 kb on - strand, within MPMX20_03280at 3452.355 kb on - strand, within MPMX20_03280at 3452.391 kb on + strand, within MPMX20_03280at 3452.391 kb on + strand, within MPMX20_03280at 3452.399 kb on - strand, within MPMX20_03280at 3452.399 kb on - strand, within MPMX20_03280at 3452.399 kb on - strand, within MPMX20_03280at 3452.399 kb on - strand, within MPMX20_03280at 3452.759 kb on - strandat 3452.783 kb on - strandat 3452.783 kb on - strandat 3452.796 kb on + strandat 3452.796 kb on + strandat 3452.801 kb on + strandat 3452.809 kb on - strandat 3452.828 kb on + strandat 3452.833 kb on + strandat 3452.892 kb on - strand, within MPMX20_03281at 3452.892 kb on - strand, within MPMX20_03281at 3452.942 kb on + strand, within MPMX20_03281at 3452.953 kb on + strand, within MPMX20_03281

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, Mixed culture; Bacillus megaterium TBS_053 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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3,449,432 - MPMX20_03277 0.63 +0.8
3,449,455 - MPMX20_03277 0.65 +0.8
3,449,514 + MPMX20_03277 0.70 -1.0
3,449,620 + MPMX20_03277 0.79 +0.1
3,449,620 + MPMX20_03277 0.79 -0.2
3,449,653 + MPMX20_03277 0.81 -0.9
3,449,668 + MPMX20_03277 0.82 -0.7
3,449,706 + MPMX20_03277 0.86 -0.2
3,449,742 - MPMX20_03277 0.88 -0.3
3,449,748 + MPMX20_03277 0.89 -1.5
3,449,748 + MPMX20_03277 0.89 +0.8
3,449,814 - -0.8
3,449,814 - -2.1
3,449,819 + +1.6
3,449,868 + -0.2
3,449,876 - -0.6
3,449,903 - -1.7
3,449,939 - +0.5
3,450,046 + +1.0
3,450,068 - -0.6
3,450,142 + MPMX20_03278 0.22 -1.6
3,450,142 + MPMX20_03278 0.22 +5.4
3,450,160 - MPMX20_03278 0.36 +0.1
3,450,194 + MPMX20_03278 0.63 +0.0
3,450,206 - MPMX20_03278 0.72 -0.2
3,450,265 - -2.0
3,450,265 - -0.2
3,450,325 - +0.4
3,450,380 + -0.1
3,450,388 - +1.1
3,450,388 - -0.7
3,450,392 + -0.6
3,450,400 - +0.7
3,450,423 - -0.6
3,450,424 - -0.4
3,450,441 + -0.5
3,450,449 - -1.2
3,450,452 + +1.0
3,450,527 + MPMX20_03279 0.14 -1.0
3,450,562 + MPMX20_03279 0.16 +0.0
3,450,646 + MPMX20_03279 0.21 +0.8
3,450,650 - MPMX20_03279 0.21 -0.3
3,450,711 - MPMX20_03279 0.25 +0.7
3,450,733 - MPMX20_03279 0.26 -1.1
3,450,797 + MPMX20_03279 0.30 +1.2
3,450,824 + MPMX20_03279 0.32 -0.2
3,450,867 + MPMX20_03279 0.34 +0.7
3,450,867 + MPMX20_03279 0.34 -0.2
3,450,933 - MPMX20_03279 0.38 +0.4
3,450,937 - MPMX20_03279 0.39 +0.3
3,451,029 + MPMX20_03279 0.44 -1.0
3,451,029 + MPMX20_03279 0.44 +0.8
3,451,076 + MPMX20_03279 0.47 -0.0
3,451,091 + MPMX20_03279 0.48 -0.2
3,451,237 + MPMX20_03279 0.56 +0.6
3,451,245 - MPMX20_03279 0.57 -0.3
3,451,255 - MPMX20_03279 0.57 -1.6
3,451,263 - MPMX20_03279 0.58 +0.5
3,451,263 - MPMX20_03279 0.58 -0.9
3,451,284 + MPMX20_03279 0.59 -0.5
3,451,286 - MPMX20_03279 0.59 -1.9
3,451,292 - MPMX20_03279 0.60 +1.4
3,451,292 - MPMX20_03279 0.60 -1.1
3,451,318 + MPMX20_03279 0.61 +0.0
3,451,343 + MPMX20_03279 0.63 -0.7
3,451,358 + MPMX20_03279 0.64 -1.4
3,451,360 + MPMX20_03279 0.64 -0.3
3,451,368 - MPMX20_03279 0.64 -1.9
3,451,429 + MPMX20_03279 0.68 +1.7
3,451,437 - MPMX20_03279 0.68 -0.2
3,451,437 - MPMX20_03279 0.68 -2.0
3,451,453 + MPMX20_03279 0.69 +0.4
3,451,484 + MPMX20_03279 0.71 -0.4
3,451,484 + MPMX20_03279 0.71 +0.4
3,451,487 - MPMX20_03279 0.71 -0.6
3,451,492 - MPMX20_03279 0.72 +0.6
3,451,492 - MPMX20_03279 0.72 +0.4
3,451,492 - MPMX20_03279 0.72 -0.6
3,451,497 - MPMX20_03279 0.72 -0.3
3,451,502 - MPMX20_03279 0.72 -1.0
3,451,507 - MPMX20_03279 0.72 -0.8
3,451,542 + MPMX20_03279 0.75 -1.2
3,451,567 + MPMX20_03279 0.76 -0.4
3,451,571 - MPMX20_03279 0.76 -0.5
3,451,589 - MPMX20_03279 0.77 +0.2
3,451,589 - MPMX20_03279 0.77 -0.2
3,451,617 - MPMX20_03279 0.79 +1.8
3,451,619 - MPMX20_03279 0.79 -1.2
3,451,625 + MPMX20_03279 0.80 -0.4
3,451,625 + MPMX20_03279 0.80 -0.3
3,451,631 - MPMX20_03279 0.80 +0.7
3,451,633 - MPMX20_03279 0.80 +0.3
3,451,666 + MPMX20_03279 0.82 -0.8
3,451,673 + MPMX20_03279 0.82 +2.3
3,451,681 - MPMX20_03279 0.83 +0.4
3,451,697 - MPMX20_03279 0.84 +0.3
3,451,698 - MPMX20_03279 0.84 -0.9
3,451,698 - MPMX20_03279 0.84 -1.5
3,451,702 + MPMX20_03279 0.84 +0.2
3,451,712 + MPMX20_03279 0.85 +0.4
3,451,733 - MPMX20_03279 0.86 -0.8
3,451,791 + MPMX20_03279 0.89 -0.1
3,451,797 + MPMX20_03279 0.90 -1.0
3,451,805 - +0.1
3,451,820 + +0.3
3,451,830 + +1.4
3,451,836 - +0.2
3,451,848 + -0.8
3,451,963 + -0.1
3,452,029 + -0.1
3,452,081 - MPMX20_03280 0.14 -0.2
3,452,081 - MPMX20_03280 0.14 +0.2
3,452,084 + MPMX20_03280 0.14 +0.1
3,452,085 + MPMX20_03280 0.14 +0.3
3,452,085 + MPMX20_03280 0.14 -1.1
3,452,085 + MPMX20_03280 0.14 -0.3
3,452,085 + MPMX20_03280 0.14 -0.5
3,452,092 - MPMX20_03280 0.15 -0.4
3,452,092 - MPMX20_03280 0.15 +1.4
3,452,092 - MPMX20_03280 0.15 -0.2
3,452,092 - MPMX20_03280 0.15 +0.9
3,452,093 - MPMX20_03280 0.15 +0.9
3,452,093 - MPMX20_03280 0.15 -0.7
3,452,093 - MPMX20_03280 0.15 -1.3
3,452,163 + MPMX20_03280 0.25 +0.1
3,452,171 - MPMX20_03280 0.26 -1.2
3,452,249 - MPMX20_03280 0.36 -1.2
3,452,251 - MPMX20_03280 0.37 -1.6
3,452,251 - MPMX20_03280 0.37 +0.4
3,452,323 + MPMX20_03280 0.47 +0.4
3,452,355 - MPMX20_03280 0.51 +1.3
3,452,355 - MPMX20_03280 0.51 +0.3
3,452,391 + MPMX20_03280 0.56 -0.3
3,452,391 + MPMX20_03280 0.56 -1.3
3,452,399 - MPMX20_03280 0.57 -0.6
3,452,399 - MPMX20_03280 0.57 -0.1
3,452,399 - MPMX20_03280 0.57 +0.2
3,452,399 - MPMX20_03280 0.57 +0.4
3,452,759 - +0.2
3,452,783 - -0.8
3,452,783 - -1.6
3,452,796 + -1.0
3,452,796 + -1.1
3,452,801 + +1.4
3,452,809 - -0.1
3,452,828 + -0.6
3,452,833 + -0.3
3,452,892 - MPMX20_03281 0.15 -0.2
3,452,892 - MPMX20_03281 0.15 -0.4
3,452,942 + MPMX20_03281 0.20 +1.4
3,452,953 + MPMX20_03281 0.21 -0.6

Or see this region's nucleotide sequence