Experiment: 0.1X LB plate, Mixed culture; Bacillus pumilus TBS_051 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04398 and MPMX20_04399 are separated by 71 nucleotides MPMX20_04399 and MPMX20_04400 are separated by 271 nucleotides
MPMX20_04398: MPMX20_04398 - Ribosomal RNA large subunit methyltransferase J, at 4,589,471 to 4,590,313
_04398
MPMX20_04399: MPMX20_04399 - Glutathione reductase, at 4,590,385 to 4,591,737
_04399
MPMX20_04400: MPMX20_04400 - Cytoplasmic trehalase, at 4,592,009 to 4,593,658
_04400
Position (kb)
4590
4591
4592 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4589.441 kb on - strand at 4589.490 kb on + strand at 4589.517 kb on + strand at 4589.531 kb on + strand at 4589.600 kb on + strand, within MPMX20_04398 at 4589.709 kb on - strand, within MPMX20_04398 at 4589.808 kb on + strand, within MPMX20_04398 at 4589.808 kb on + strand, within MPMX20_04398 at 4589.808 kb on + strand, within MPMX20_04398 at 4589.808 kb on + strand, within MPMX20_04398 at 4589.816 kb on - strand, within MPMX20_04398 at 4589.816 kb on - strand, within MPMX20_04398 at 4589.816 kb on - strand, within MPMX20_04398 at 4589.816 kb on - strand, within MPMX20_04398 at 4589.816 kb on - strand, within MPMX20_04398 at 4589.816 kb on - strand, within MPMX20_04398 at 4589.816 kb on - strand, within MPMX20_04398 at 4589.909 kb on - strand, within MPMX20_04398 at 4589.919 kb on - strand, within MPMX20_04398 at 4589.946 kb on + strand, within MPMX20_04398 at 4589.954 kb on - strand, within MPMX20_04398 at 4589.954 kb on - strand, within MPMX20_04398 at 4589.974 kb on + strand, within MPMX20_04398 at 4590.042 kb on + strand, within MPMX20_04398 at 4590.042 kb on + strand, within MPMX20_04398 at 4590.042 kb on + strand, within MPMX20_04398 at 4590.050 kb on - strand, within MPMX20_04398 at 4590.050 kb on - strand, within MPMX20_04398 at 4590.050 kb on - strand, within MPMX20_04398 at 4590.050 kb on - strand, within MPMX20_04398 at 4590.050 kb on - strand, within MPMX20_04398 at 4590.050 kb on - strand, within MPMX20_04398 at 4590.050 kb on - strand, within MPMX20_04398 at 4590.149 kb on + strand, within MPMX20_04398 at 4590.156 kb on + strand, within MPMX20_04398 at 4590.164 kb on - strand, within MPMX20_04398 at 4590.214 kb on + strand, within MPMX20_04398 at 4590.278 kb on + strand at 4590.281 kb on - strand at 4590.390 kb on - strand at 4590.529 kb on - strand, within MPMX20_04399 at 4590.553 kb on + strand, within MPMX20_04399 at 4590.553 kb on + strand, within MPMX20_04399 at 4590.561 kb on - strand, within MPMX20_04399 at 4590.696 kb on - strand, within MPMX20_04399 at 4590.734 kb on + strand, within MPMX20_04399 at 4590.764 kb on + strand, within MPMX20_04399 at 4590.764 kb on - strand, within MPMX20_04399 at 4590.817 kb on + strand, within MPMX20_04399 at 4590.890 kb on + strand, within MPMX20_04399 at 4590.908 kb on - strand, within MPMX20_04399 at 4590.920 kb on + strand, within MPMX20_04399 at 4590.928 kb on - strand, within MPMX20_04399 at 4591.049 kb on + strand, within MPMX20_04399 at 4591.062 kb on + strand, within MPMX20_04399 at 4591.062 kb on + strand, within MPMX20_04399 at 4591.062 kb on + strand, within MPMX20_04399 at 4591.064 kb on + strand, within MPMX20_04399 at 4591.070 kb on - strand, within MPMX20_04399 at 4591.070 kb on - strand, within MPMX20_04399 at 4591.070 kb on - strand, within MPMX20_04399 at 4591.070 kb on - strand, within MPMX20_04399 at 4591.106 kb on + strand, within MPMX20_04399 at 4591.155 kb on + strand, within MPMX20_04399 at 4591.177 kb on - strand, within MPMX20_04399 at 4591.198 kb on - strand, within MPMX20_04399 at 4591.231 kb on + strand, within MPMX20_04399 at 4591.231 kb on + strand, within MPMX20_04399 at 4591.232 kb on + strand, within MPMX20_04399 at 4591.367 kb on - strand, within MPMX20_04399 at 4591.478 kb on - strand, within MPMX20_04399 at 4591.478 kb on - strand, within MPMX20_04399 at 4591.478 kb on - strand, within MPMX20_04399 at 4591.500 kb on - strand, within MPMX20_04399 at 4591.518 kb on + strand, within MPMX20_04399 at 4591.525 kb on + strand, within MPMX20_04399 at 4591.599 kb on - strand, within MPMX20_04399 at 4591.731 kb on + strand at 4591.748 kb on + strand at 4591.748 kb on + strand at 4591.759 kb on - strand at 4591.822 kb on - strand at 4591.984 kb on - strand at 4591.997 kb on - strand at 4592.007 kb on - strand at 4592.024 kb on + strand at 4592.041 kb on - strand at 4592.084 kb on - strand at 4592.138 kb on + strand at 4592.170 kb on - strand at 4592.184 kb on + strand, within MPMX20_04400 at 4592.184 kb on + strand, within MPMX20_04400 at 4592.192 kb on - strand, within MPMX20_04400 at 4592.192 kb on - strand, within MPMX20_04400 at 4592.192 kb on - strand, within MPMX20_04400 at 4592.192 kb on - strand, within MPMX20_04400 at 4592.192 kb on - strand, within MPMX20_04400 at 4592.192 kb on - strand, within MPMX20_04400 at 4592.192 kb on - strand, within MPMX20_04400 at 4592.192 kb on - strand, within MPMX20_04400 at 4592.194 kb on + strand, within MPMX20_04400 at 4592.211 kb on + strand, within MPMX20_04400 at 4592.211 kb on + strand, within MPMX20_04400 at 4592.230 kb on + strand, within MPMX20_04400 at 4592.252 kb on + strand, within MPMX20_04400 at 4592.304 kb on - strand, within MPMX20_04400 at 4592.343 kb on + strand, within MPMX20_04400 at 4592.359 kb on + strand, within MPMX20_04400 at 4592.359 kb on + strand, within MPMX20_04400 at 4592.367 kb on - strand, within MPMX20_04400 at 4592.393 kb on - strand, within MPMX20_04400 at 4592.427 kb on - strand, within MPMX20_04400 at 4592.458 kb on + strand, within MPMX20_04400 at 4592.458 kb on + strand, within MPMX20_04400 at 4592.458 kb on + strand, within MPMX20_04400 at 4592.459 kb on + strand, within MPMX20_04400 at 4592.488 kb on + strand, within MPMX20_04400 at 4592.488 kb on + strand, within MPMX20_04400 at 4592.496 kb on - strand, within MPMX20_04400 at 4592.496 kb on - strand, within MPMX20_04400 at 4592.496 kb on - strand, within MPMX20_04400 at 4592.564 kb on - strand, within MPMX20_04400 at 4592.568 kb on - strand, within MPMX20_04400 at 4592.592 kb on - strand, within MPMX20_04400 at 4592.634 kb on - strand, within MPMX20_04400 at 4592.639 kb on - strand, within MPMX20_04400 at 4592.644 kb on - strand, within MPMX20_04400 at 4592.706 kb on + strand, within MPMX20_04400 at 4592.707 kb on + strand, within MPMX20_04400 at 4592.716 kb on + strand, within MPMX20_04400 at 4592.723 kb on - strand, within MPMX20_04400 at 4592.730 kb on + strand, within MPMX20_04400 at 4592.730 kb on + strand, within MPMX20_04400 at 4592.730 kb on + strand, within MPMX20_04400 at 4592.737 kb on + strand, within MPMX20_04400
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Bacillus pumilus TBS_051 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 4,589,441 - +0.2 4,589,490 + -0.7 4,589,517 + -1.3 4,589,531 + +1.9 4,589,600 + MPMX20_04398 0.15 +1.5 4,589,709 - MPMX20_04398 0.28 -0.0 4,589,808 + MPMX20_04398 0.40 +0.2 4,589,808 + MPMX20_04398 0.40 +0.2 4,589,808 + MPMX20_04398 0.40 -0.7 4,589,808 + MPMX20_04398 0.40 +0.5 4,589,816 - MPMX20_04398 0.41 +0.2 4,589,816 - MPMX20_04398 0.41 -0.5 4,589,816 - MPMX20_04398 0.41 -0.4 4,589,816 - MPMX20_04398 0.41 -0.3 4,589,816 - MPMX20_04398 0.41 +0.9 4,589,816 - MPMX20_04398 0.41 -0.8 4,589,816 - MPMX20_04398 0.41 +0.4 4,589,909 - MPMX20_04398 0.52 -0.3 4,589,919 - MPMX20_04398 0.53 -1.5 4,589,946 + MPMX20_04398 0.56 +1.0 4,589,954 - MPMX20_04398 0.57 -0.8 4,589,954 - MPMX20_04398 0.57 -0.8 4,589,974 + MPMX20_04398 0.60 +0.0 4,590,042 + MPMX20_04398 0.68 -1.8 4,590,042 + MPMX20_04398 0.68 -1.1 4,590,042 + MPMX20_04398 0.68 -0.3 4,590,050 - MPMX20_04398 0.69 +0.6 4,590,050 - MPMX20_04398 0.69 -0.0 4,590,050 - MPMX20_04398 0.69 +0.2 4,590,050 - MPMX20_04398 0.69 -0.1 4,590,050 - MPMX20_04398 0.69 +0.1 4,590,050 - MPMX20_04398 0.69 -0.2 4,590,050 - MPMX20_04398 0.69 +0.2 4,590,149 + MPMX20_04398 0.80 +0.1 4,590,156 + MPMX20_04398 0.81 -1.7 4,590,164 - MPMX20_04398 0.82 -1.3 4,590,214 + MPMX20_04398 0.88 -0.4 4,590,278 + -1.7 4,590,281 - +0.1 4,590,390 - -0.7 4,590,529 - MPMX20_04399 0.11 +0.4 4,590,553 + MPMX20_04399 0.12 -1.2 4,590,553 + MPMX20_04399 0.12 -0.1 4,590,561 - MPMX20_04399 0.13 -1.2 4,590,696 - MPMX20_04399 0.23 -1.3 4,590,734 + MPMX20_04399 0.26 -1.5 4,590,764 + MPMX20_04399 0.28 -1.9 4,590,764 - MPMX20_04399 0.28 +0.6 4,590,817 + MPMX20_04399 0.32 -2.0 4,590,890 + MPMX20_04399 0.37 -1.8 4,590,908 - MPMX20_04399 0.39 +0.9 4,590,920 + MPMX20_04399 0.40 +0.2 4,590,928 - MPMX20_04399 0.40 +0.9 4,591,049 + MPMX20_04399 0.49 -0.1 4,591,062 + MPMX20_04399 0.50 -0.7 4,591,062 + MPMX20_04399 0.50 +0.6 4,591,062 + MPMX20_04399 0.50 -0.2 4,591,064 + MPMX20_04399 0.50 -0.5 4,591,070 - MPMX20_04399 0.51 -2.2 4,591,070 - MPMX20_04399 0.51 +0.9 4,591,070 - MPMX20_04399 0.51 -0.8 4,591,070 - MPMX20_04399 0.51 -1.8 4,591,106 + MPMX20_04399 0.53 +0.2 4,591,155 + MPMX20_04399 0.57 -1.6 4,591,177 - MPMX20_04399 0.59 -0.6 4,591,198 - MPMX20_04399 0.60 -2.1 4,591,231 + MPMX20_04399 0.63 -0.2 4,591,231 + MPMX20_04399 0.63 -0.3 4,591,232 + MPMX20_04399 0.63 -0.0 4,591,367 - MPMX20_04399 0.73 +0.2 4,591,478 - MPMX20_04399 0.81 +0.3 4,591,478 - MPMX20_04399 0.81 -1.4 4,591,478 - MPMX20_04399 0.81 -1.3 4,591,500 - MPMX20_04399 0.82 -0.1 4,591,518 + MPMX20_04399 0.84 +0.5 4,591,525 + MPMX20_04399 0.84 -2.2 4,591,599 - MPMX20_04399 0.90 -0.5 4,591,731 + +1.4 4,591,748 + -0.3 4,591,748 + -0.8 4,591,759 - +0.5 4,591,822 - -0.7 4,591,984 - +0.3 4,591,997 - -0.4 4,592,007 - -0.6 4,592,024 + +0.0 4,592,041 - +0.9 4,592,084 - -3.3 4,592,138 + -0.6 4,592,170 - -1.1 4,592,184 + MPMX20_04400 0.11 -1.0 4,592,184 + MPMX20_04400 0.11 +0.2 4,592,192 - MPMX20_04400 0.11 +0.8 4,592,192 - MPMX20_04400 0.11 -0.7 4,592,192 - MPMX20_04400 0.11 -0.5 4,592,192 - MPMX20_04400 0.11 +0.3 4,592,192 - MPMX20_04400 0.11 +1.8 4,592,192 - MPMX20_04400 0.11 -1.3 4,592,192 - MPMX20_04400 0.11 -1.4 4,592,192 - MPMX20_04400 0.11 -0.7 4,592,194 + MPMX20_04400 0.11 +0.9 4,592,211 + MPMX20_04400 0.12 -0.4 4,592,211 + MPMX20_04400 0.12 -0.6 4,592,230 + MPMX20_04400 0.13 -0.5 4,592,252 + MPMX20_04400 0.15 +0.3 4,592,304 - MPMX20_04400 0.18 +0.4 4,592,343 + MPMX20_04400 0.20 +1.5 4,592,359 + MPMX20_04400 0.21 +0.2 4,592,359 + MPMX20_04400 0.21 -0.2 4,592,367 - MPMX20_04400 0.22 -1.6 4,592,393 - MPMX20_04400 0.23 +1.2 4,592,427 - MPMX20_04400 0.25 +0.4 4,592,458 + MPMX20_04400 0.27 -1.4 4,592,458 + MPMX20_04400 0.27 +0.5 4,592,458 + MPMX20_04400 0.27 +0.6 4,592,459 + MPMX20_04400 0.27 -1.2 4,592,488 + MPMX20_04400 0.29 +0.6 4,592,488 + MPMX20_04400 0.29 +0.2 4,592,496 - MPMX20_04400 0.30 +0.3 4,592,496 - MPMX20_04400 0.30 -0.8 4,592,496 - MPMX20_04400 0.30 -2.2 4,592,564 - MPMX20_04400 0.34 +0.2 4,592,568 - MPMX20_04400 0.34 +1.5 4,592,592 - MPMX20_04400 0.35 -0.4 4,592,634 - MPMX20_04400 0.38 +0.9 4,592,639 - MPMX20_04400 0.38 -1.2 4,592,644 - MPMX20_04400 0.38 +3.1 4,592,706 + MPMX20_04400 0.42 +0.8 4,592,707 + MPMX20_04400 0.42 -0.7 4,592,716 + MPMX20_04400 0.43 -0.7 4,592,723 - MPMX20_04400 0.43 +1.5 4,592,730 + MPMX20_04400 0.44 -0.9 4,592,730 + MPMX20_04400 0.44 -1.0 4,592,730 + MPMX20_04400 0.44 -2.6 4,592,737 + MPMX20_04400 0.44 -0.5
Or see this region's nucleotide sequence