Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04399

Experiment: 0.1X LB plate, Mixed culture; Bacillus pumilus TBS_051 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04398 and MPMX20_04399 are separated by 71 nucleotidesMPMX20_04399 and MPMX20_04400 are separated by 271 nucleotides MPMX20_04398: MPMX20_04398 - Ribosomal RNA large subunit methyltransferase J, at 4,589,471 to 4,590,313 _04398 MPMX20_04399: MPMX20_04399 - Glutathione reductase, at 4,590,385 to 4,591,737 _04399 MPMX20_04400: MPMX20_04400 - Cytoplasmic trehalase, at 4,592,009 to 4,593,658 _04400 Position (kb) 4590 4591 4592Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4589.441 kb on - strandat 4589.490 kb on + strandat 4589.517 kb on + strandat 4589.531 kb on + strandat 4589.600 kb on + strand, within MPMX20_04398at 4589.709 kb on - strand, within MPMX20_04398at 4589.808 kb on + strand, within MPMX20_04398at 4589.808 kb on + strand, within MPMX20_04398at 4589.808 kb on + strand, within MPMX20_04398at 4589.808 kb on + strand, within MPMX20_04398at 4589.816 kb on - strand, within MPMX20_04398at 4589.816 kb on - strand, within MPMX20_04398at 4589.816 kb on - strand, within MPMX20_04398at 4589.816 kb on - strand, within MPMX20_04398at 4589.816 kb on - strand, within MPMX20_04398at 4589.816 kb on - strand, within MPMX20_04398at 4589.816 kb on - strand, within MPMX20_04398at 4589.909 kb on - strand, within MPMX20_04398at 4589.919 kb on - strand, within MPMX20_04398at 4589.946 kb on + strand, within MPMX20_04398at 4589.954 kb on - strand, within MPMX20_04398at 4589.954 kb on - strand, within MPMX20_04398at 4589.974 kb on + strand, within MPMX20_04398at 4590.042 kb on + strand, within MPMX20_04398at 4590.042 kb on + strand, within MPMX20_04398at 4590.042 kb on + strand, within MPMX20_04398at 4590.050 kb on - strand, within MPMX20_04398at 4590.050 kb on - strand, within MPMX20_04398at 4590.050 kb on - strand, within MPMX20_04398at 4590.050 kb on - strand, within MPMX20_04398at 4590.050 kb on - strand, within MPMX20_04398at 4590.050 kb on - strand, within MPMX20_04398at 4590.050 kb on - strand, within MPMX20_04398at 4590.149 kb on + strand, within MPMX20_04398at 4590.156 kb on + strand, within MPMX20_04398at 4590.164 kb on - strand, within MPMX20_04398at 4590.214 kb on + strand, within MPMX20_04398at 4590.278 kb on + strandat 4590.281 kb on - strandat 4590.390 kb on - strandat 4590.529 kb on - strand, within MPMX20_04399at 4590.553 kb on + strand, within MPMX20_04399at 4590.553 kb on + strand, within MPMX20_04399at 4590.561 kb on - strand, within MPMX20_04399at 4590.696 kb on - strand, within MPMX20_04399at 4590.734 kb on + strand, within MPMX20_04399at 4590.764 kb on + strand, within MPMX20_04399at 4590.764 kb on - strand, within MPMX20_04399at 4590.817 kb on + strand, within MPMX20_04399at 4590.890 kb on + strand, within MPMX20_04399at 4590.908 kb on - strand, within MPMX20_04399at 4590.920 kb on + strand, within MPMX20_04399at 4590.928 kb on - strand, within MPMX20_04399at 4591.049 kb on + strand, within MPMX20_04399at 4591.062 kb on + strand, within MPMX20_04399at 4591.062 kb on + strand, within MPMX20_04399at 4591.062 kb on + strand, within MPMX20_04399at 4591.064 kb on + strand, within MPMX20_04399at 4591.070 kb on - strand, within MPMX20_04399at 4591.070 kb on - strand, within MPMX20_04399at 4591.070 kb on - strand, within MPMX20_04399at 4591.070 kb on - strand, within MPMX20_04399at 4591.106 kb on + strand, within MPMX20_04399at 4591.155 kb on + strand, within MPMX20_04399at 4591.177 kb on - strand, within MPMX20_04399at 4591.198 kb on - strand, within MPMX20_04399at 4591.231 kb on + strand, within MPMX20_04399at 4591.231 kb on + strand, within MPMX20_04399at 4591.232 kb on + strand, within MPMX20_04399at 4591.367 kb on - strand, within MPMX20_04399at 4591.478 kb on - strand, within MPMX20_04399at 4591.478 kb on - strand, within MPMX20_04399at 4591.478 kb on - strand, within MPMX20_04399at 4591.500 kb on - strand, within MPMX20_04399at 4591.518 kb on + strand, within MPMX20_04399at 4591.525 kb on + strand, within MPMX20_04399at 4591.599 kb on - strand, within MPMX20_04399at 4591.731 kb on + strandat 4591.748 kb on + strandat 4591.748 kb on + strandat 4591.759 kb on - strandat 4591.822 kb on - strandat 4591.984 kb on - strandat 4591.997 kb on - strandat 4592.007 kb on - strandat 4592.024 kb on + strandat 4592.041 kb on - strandat 4592.084 kb on - strandat 4592.138 kb on + strandat 4592.170 kb on - strandat 4592.184 kb on + strand, within MPMX20_04400at 4592.184 kb on + strand, within MPMX20_04400at 4592.192 kb on - strand, within MPMX20_04400at 4592.192 kb on - strand, within MPMX20_04400at 4592.192 kb on - strand, within MPMX20_04400at 4592.192 kb on - strand, within MPMX20_04400at 4592.192 kb on - strand, within MPMX20_04400at 4592.192 kb on - strand, within MPMX20_04400at 4592.192 kb on - strand, within MPMX20_04400at 4592.192 kb on - strand, within MPMX20_04400at 4592.194 kb on + strand, within MPMX20_04400at 4592.211 kb on + strand, within MPMX20_04400at 4592.211 kb on + strand, within MPMX20_04400at 4592.230 kb on + strand, within MPMX20_04400at 4592.252 kb on + strand, within MPMX20_04400at 4592.304 kb on - strand, within MPMX20_04400at 4592.343 kb on + strand, within MPMX20_04400at 4592.359 kb on + strand, within MPMX20_04400at 4592.359 kb on + strand, within MPMX20_04400at 4592.367 kb on - strand, within MPMX20_04400at 4592.393 kb on - strand, within MPMX20_04400at 4592.427 kb on - strand, within MPMX20_04400at 4592.458 kb on + strand, within MPMX20_04400at 4592.458 kb on + strand, within MPMX20_04400at 4592.458 kb on + strand, within MPMX20_04400at 4592.459 kb on + strand, within MPMX20_04400at 4592.488 kb on + strand, within MPMX20_04400at 4592.488 kb on + strand, within MPMX20_04400at 4592.496 kb on - strand, within MPMX20_04400at 4592.496 kb on - strand, within MPMX20_04400at 4592.496 kb on - strand, within MPMX20_04400at 4592.564 kb on - strand, within MPMX20_04400at 4592.568 kb on - strand, within MPMX20_04400at 4592.592 kb on - strand, within MPMX20_04400at 4592.634 kb on - strand, within MPMX20_04400at 4592.639 kb on - strand, within MPMX20_04400at 4592.644 kb on - strand, within MPMX20_04400at 4592.706 kb on + strand, within MPMX20_04400at 4592.707 kb on + strand, within MPMX20_04400at 4592.716 kb on + strand, within MPMX20_04400at 4592.723 kb on - strand, within MPMX20_04400at 4592.730 kb on + strand, within MPMX20_04400at 4592.730 kb on + strand, within MPMX20_04400at 4592.730 kb on + strand, within MPMX20_04400at 4592.737 kb on + strand, within MPMX20_04400

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Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Bacillus pumilus TBS_051 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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4,589,441 - +0.2
4,589,490 + -0.7
4,589,517 + -1.3
4,589,531 + +1.9
4,589,600 + MPMX20_04398 0.15 +1.5
4,589,709 - MPMX20_04398 0.28 -0.0
4,589,808 + MPMX20_04398 0.40 +0.2
4,589,808 + MPMX20_04398 0.40 +0.2
4,589,808 + MPMX20_04398 0.40 -0.7
4,589,808 + MPMX20_04398 0.40 +0.5
4,589,816 - MPMX20_04398 0.41 +0.2
4,589,816 - MPMX20_04398 0.41 -0.5
4,589,816 - MPMX20_04398 0.41 -0.4
4,589,816 - MPMX20_04398 0.41 -0.3
4,589,816 - MPMX20_04398 0.41 +0.9
4,589,816 - MPMX20_04398 0.41 -0.8
4,589,816 - MPMX20_04398 0.41 +0.4
4,589,909 - MPMX20_04398 0.52 -0.3
4,589,919 - MPMX20_04398 0.53 -1.5
4,589,946 + MPMX20_04398 0.56 +1.0
4,589,954 - MPMX20_04398 0.57 -0.8
4,589,954 - MPMX20_04398 0.57 -0.8
4,589,974 + MPMX20_04398 0.60 +0.0
4,590,042 + MPMX20_04398 0.68 -1.8
4,590,042 + MPMX20_04398 0.68 -1.1
4,590,042 + MPMX20_04398 0.68 -0.3
4,590,050 - MPMX20_04398 0.69 +0.6
4,590,050 - MPMX20_04398 0.69 -0.0
4,590,050 - MPMX20_04398 0.69 +0.2
4,590,050 - MPMX20_04398 0.69 -0.1
4,590,050 - MPMX20_04398 0.69 +0.1
4,590,050 - MPMX20_04398 0.69 -0.2
4,590,050 - MPMX20_04398 0.69 +0.2
4,590,149 + MPMX20_04398 0.80 +0.1
4,590,156 + MPMX20_04398 0.81 -1.7
4,590,164 - MPMX20_04398 0.82 -1.3
4,590,214 + MPMX20_04398 0.88 -0.4
4,590,278 + -1.7
4,590,281 - +0.1
4,590,390 - -0.7
4,590,529 - MPMX20_04399 0.11 +0.4
4,590,553 + MPMX20_04399 0.12 -1.2
4,590,553 + MPMX20_04399 0.12 -0.1
4,590,561 - MPMX20_04399 0.13 -1.2
4,590,696 - MPMX20_04399 0.23 -1.3
4,590,734 + MPMX20_04399 0.26 -1.5
4,590,764 + MPMX20_04399 0.28 -1.9
4,590,764 - MPMX20_04399 0.28 +0.6
4,590,817 + MPMX20_04399 0.32 -2.0
4,590,890 + MPMX20_04399 0.37 -1.8
4,590,908 - MPMX20_04399 0.39 +0.9
4,590,920 + MPMX20_04399 0.40 +0.2
4,590,928 - MPMX20_04399 0.40 +0.9
4,591,049 + MPMX20_04399 0.49 -0.1
4,591,062 + MPMX20_04399 0.50 -0.7
4,591,062 + MPMX20_04399 0.50 +0.6
4,591,062 + MPMX20_04399 0.50 -0.2
4,591,064 + MPMX20_04399 0.50 -0.5
4,591,070 - MPMX20_04399 0.51 -2.2
4,591,070 - MPMX20_04399 0.51 +0.9
4,591,070 - MPMX20_04399 0.51 -0.8
4,591,070 - MPMX20_04399 0.51 -1.8
4,591,106 + MPMX20_04399 0.53 +0.2
4,591,155 + MPMX20_04399 0.57 -1.6
4,591,177 - MPMX20_04399 0.59 -0.6
4,591,198 - MPMX20_04399 0.60 -2.1
4,591,231 + MPMX20_04399 0.63 -0.2
4,591,231 + MPMX20_04399 0.63 -0.3
4,591,232 + MPMX20_04399 0.63 -0.0
4,591,367 - MPMX20_04399 0.73 +0.2
4,591,478 - MPMX20_04399 0.81 +0.3
4,591,478 - MPMX20_04399 0.81 -1.4
4,591,478 - MPMX20_04399 0.81 -1.3
4,591,500 - MPMX20_04399 0.82 -0.1
4,591,518 + MPMX20_04399 0.84 +0.5
4,591,525 + MPMX20_04399 0.84 -2.2
4,591,599 - MPMX20_04399 0.90 -0.5
4,591,731 + +1.4
4,591,748 + -0.3
4,591,748 + -0.8
4,591,759 - +0.5
4,591,822 - -0.7
4,591,984 - +0.3
4,591,997 - -0.4
4,592,007 - -0.6
4,592,024 + +0.0
4,592,041 - +0.9
4,592,084 - -3.3
4,592,138 + -0.6
4,592,170 - -1.1
4,592,184 + MPMX20_04400 0.11 -1.0
4,592,184 + MPMX20_04400 0.11 +0.2
4,592,192 - MPMX20_04400 0.11 +0.8
4,592,192 - MPMX20_04400 0.11 -0.7
4,592,192 - MPMX20_04400 0.11 -0.5
4,592,192 - MPMX20_04400 0.11 +0.3
4,592,192 - MPMX20_04400 0.11 +1.8
4,592,192 - MPMX20_04400 0.11 -1.3
4,592,192 - MPMX20_04400 0.11 -1.4
4,592,192 - MPMX20_04400 0.11 -0.7
4,592,194 + MPMX20_04400 0.11 +0.9
4,592,211 + MPMX20_04400 0.12 -0.4
4,592,211 + MPMX20_04400 0.12 -0.6
4,592,230 + MPMX20_04400 0.13 -0.5
4,592,252 + MPMX20_04400 0.15 +0.3
4,592,304 - MPMX20_04400 0.18 +0.4
4,592,343 + MPMX20_04400 0.20 +1.5
4,592,359 + MPMX20_04400 0.21 +0.2
4,592,359 + MPMX20_04400 0.21 -0.2
4,592,367 - MPMX20_04400 0.22 -1.6
4,592,393 - MPMX20_04400 0.23 +1.2
4,592,427 - MPMX20_04400 0.25 +0.4
4,592,458 + MPMX20_04400 0.27 -1.4
4,592,458 + MPMX20_04400 0.27 +0.5
4,592,458 + MPMX20_04400 0.27 +0.6
4,592,459 + MPMX20_04400 0.27 -1.2
4,592,488 + MPMX20_04400 0.29 +0.6
4,592,488 + MPMX20_04400 0.29 +0.2
4,592,496 - MPMX20_04400 0.30 +0.3
4,592,496 - MPMX20_04400 0.30 -0.8
4,592,496 - MPMX20_04400 0.30 -2.2
4,592,564 - MPMX20_04400 0.34 +0.2
4,592,568 - MPMX20_04400 0.34 +1.5
4,592,592 - MPMX20_04400 0.35 -0.4
4,592,634 - MPMX20_04400 0.38 +0.9
4,592,639 - MPMX20_04400 0.38 -1.2
4,592,644 - MPMX20_04400 0.38 +3.1
4,592,706 + MPMX20_04400 0.42 +0.8
4,592,707 + MPMX20_04400 0.42 -0.7
4,592,716 + MPMX20_04400 0.43 -0.7
4,592,723 - MPMX20_04400 0.43 +1.5
4,592,730 + MPMX20_04400 0.44 -0.9
4,592,730 + MPMX20_04400 0.44 -1.0
4,592,730 + MPMX20_04400 0.44 -2.6
4,592,737 + MPMX20_04400 0.44 -0.5

Or see this region's nucleotide sequence