Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04171

Experiment: 0.1X LB plate, Mixed culture; Bacillus pumilus TBS_051 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04169 and MPMX20_04170 are separated by 23 nucleotidesMPMX20_04170 and MPMX20_04171 are separated by 180 nucleotidesMPMX20_04171 and MPMX20_04172 are separated by 139 nucleotides MPMX20_04169: MPMX20_04169 - tRNA-dihydrouridine synthase B, at 4,371,849 to 4,372,814 _04169 MPMX20_04170: MPMX20_04170 - DNA-binding protein Fis, at 4,372,838 to 4,373,134 _04170 MPMX20_04171: MPMX20_04171 - hypothetical protein, at 4,373,315 to 4,373,479 _04171 MPMX20_04172: MPMX20_04172 - putative signaling protein, at 4,373,619 to 4,375,712 _04172 Position (kb) 4373 4374Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 4372.349 kb on - strand, within MPMX20_04169at 4372.456 kb on + strand, within MPMX20_04169at 4372.456 kb on + strand, within MPMX20_04169at 4372.467 kb on + strand, within MPMX20_04169at 4372.472 kb on + strand, within MPMX20_04169at 4372.472 kb on + strand, within MPMX20_04169at 4372.539 kb on + strand, within MPMX20_04169at 4372.547 kb on - strand, within MPMX20_04169at 4372.664 kb on + strand, within MPMX20_04169at 4372.673 kb on + strand, within MPMX20_04169at 4372.768 kb on + strandat 4372.783 kb on - strandat 4372.926 kb on + strand, within MPMX20_04170at 4372.968 kb on + strand, within MPMX20_04170at 4372.992 kb on + strand, within MPMX20_04170at 4373.054 kb on + strand, within MPMX20_04170at 4373.069 kb on + strand, within MPMX20_04170at 4373.069 kb on + strand, within MPMX20_04170at 4373.069 kb on + strand, within MPMX20_04170at 4373.091 kb on + strand, within MPMX20_04170at 4373.091 kb on + strand, within MPMX20_04170at 4373.214 kb on + strandat 4373.214 kb on + strandat 4373.214 kb on + strandat 4373.214 kb on + strandat 4373.214 kb on + strandat 4373.214 kb on + strandat 4373.214 kb on + strandat 4373.214 kb on + strandat 4373.214 kb on + strandat 4373.222 kb on - strandat 4373.222 kb on - strandat 4373.222 kb on - strandat 4373.222 kb on - strandat 4373.222 kb on - strandat 4373.224 kb on + strandat 4373.224 kb on + strandat 4373.224 kb on + strandat 4373.224 kb on + strandat 4373.224 kb on + strandat 4373.224 kb on + strandat 4373.232 kb on - strandat 4373.232 kb on - strandat 4373.232 kb on - strandat 4373.232 kb on - strandat 4373.254 kb on - strandat 4373.351 kb on + strand, within MPMX20_04171at 4373.388 kb on + strand, within MPMX20_04171at 4373.396 kb on - strand, within MPMX20_04171at 4373.396 kb on - strand, within MPMX20_04171at 4373.401 kb on - strand, within MPMX20_04171at 4373.463 kb on + strandat 4373.463 kb on + strandat 4373.468 kb on + strandat 4373.468 kb on + strandat 4373.471 kb on - strandat 4373.471 kb on - strandat 4373.471 kb on - strandat 4373.481 kb on + strandat 4373.504 kb on + strandat 4373.504 kb on + strandat 4373.544 kb on - strandat 4373.551 kb on - strandat 4373.565 kb on + strandat 4373.572 kb on - strandat 4373.573 kb on + strandat 4373.584 kb on + strandat 4373.595 kb on + strandat 4373.595 kb on + strandat 4373.603 kb on - strandat 4373.603 kb on - strandat 4373.603 kb on - strandat 4373.603 kb on - strandat 4373.603 kb on - strandat 4373.659 kb on + strandat 4373.696 kb on + strandat 4373.696 kb on + strandat 4373.704 kb on - strandat 4373.704 kb on - strandat 4373.726 kb on + strandat 4373.829 kb on + strand, within MPMX20_04172at 4373.836 kb on - strand, within MPMX20_04172at 4373.849 kb on - strand, within MPMX20_04172at 4373.850 kb on - strand, within MPMX20_04172at 4373.889 kb on + strand, within MPMX20_04172at 4373.889 kb on + strand, within MPMX20_04172at 4373.911 kb on + strand, within MPMX20_04172at 4373.914 kb on - strand, within MPMX20_04172at 4373.919 kb on - strand, within MPMX20_04172at 4373.933 kb on - strand, within MPMX20_04172at 4374.019 kb on + strand, within MPMX20_04172at 4374.042 kb on - strand, within MPMX20_04172at 4374.126 kb on - strand, within MPMX20_04172at 4374.153 kb on + strand, within MPMX20_04172at 4374.194 kb on + strand, within MPMX20_04172at 4374.264 kb on + strand, within MPMX20_04172at 4374.264 kb on + strand, within MPMX20_04172at 4374.269 kb on + strand, within MPMX20_04172at 4374.272 kb on - strand, within MPMX20_04172at 4374.351 kb on + strand, within MPMX20_04172at 4374.354 kb on - strand, within MPMX20_04172at 4374.354 kb on - strand, within MPMX20_04172at 4374.357 kb on + strand, within MPMX20_04172at 4374.459 kb on - strand, within MPMX20_04172

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Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Bacillus pumilus TBS_051 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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4,372,349 - MPMX20_04169 0.52 -0.6
4,372,456 + MPMX20_04169 0.63 +0.2
4,372,456 + MPMX20_04169 0.63 +2.7
4,372,467 + MPMX20_04169 0.64 +0.6
4,372,472 + MPMX20_04169 0.64 -0.4
4,372,472 + MPMX20_04169 0.64 +1.0
4,372,539 + MPMX20_04169 0.71 +0.1
4,372,547 - MPMX20_04169 0.72 +1.4
4,372,664 + MPMX20_04169 0.84 -1.0
4,372,673 + MPMX20_04169 0.85 +0.1
4,372,768 + +0.8
4,372,783 - -0.4
4,372,926 + MPMX20_04170 0.30 +0.4
4,372,968 + MPMX20_04170 0.44 -1.0
4,372,992 + MPMX20_04170 0.52 -1.2
4,373,054 + MPMX20_04170 0.73 -1.0
4,373,069 + MPMX20_04170 0.78 +1.4
4,373,069 + MPMX20_04170 0.78 -0.4
4,373,069 + MPMX20_04170 0.78 +0.6
4,373,091 + MPMX20_04170 0.85 +2.4
4,373,091 + MPMX20_04170 0.85 +0.8
4,373,214 + +1.4
4,373,214 + -0.3
4,373,214 + -0.9
4,373,214 + -0.0
4,373,214 + +2.4
4,373,214 + +0.4
4,373,214 + -1.9
4,373,214 + -1.6
4,373,214 + -0.1
4,373,222 - -0.3
4,373,222 - -0.7
4,373,222 - +0.6
4,373,222 - +0.6
4,373,222 - +0.6
4,373,224 + +1.2
4,373,224 + -0.4
4,373,224 + -1.6
4,373,224 + -1.0
4,373,224 + -0.5
4,373,224 + -0.1
4,373,232 - +1.1
4,373,232 - +0.4
4,373,232 - -0.2
4,373,232 - -0.3
4,373,254 - -1.2
4,373,351 + MPMX20_04171 0.22 +4.7
4,373,388 + MPMX20_04171 0.44 -2.1
4,373,396 - MPMX20_04171 0.49 +0.2
4,373,396 - MPMX20_04171 0.49 -1.0
4,373,401 - MPMX20_04171 0.52 -1.2
4,373,463 + +0.4
4,373,463 + -2.0
4,373,468 + -0.9
4,373,468 + +0.2
4,373,471 - -0.6
4,373,471 - -0.1
4,373,471 - -1.4
4,373,481 + -1.7
4,373,504 + -0.1
4,373,504 + +1.1
4,373,544 - +0.4
4,373,551 - -1.3
4,373,565 + -0.9
4,373,572 - -1.0
4,373,573 + -1.4
4,373,584 + +1.4
4,373,595 + +0.4
4,373,595 + -2.7
4,373,603 - -0.4
4,373,603 - +0.6
4,373,603 - +0.1
4,373,603 - -1.2
4,373,603 - +0.0
4,373,659 + +0.4
4,373,696 + +0.6
4,373,696 + -0.2
4,373,704 - +0.8
4,373,704 - -0.9
4,373,726 + +1.4
4,373,829 + MPMX20_04172 0.10 -1.2
4,373,836 - MPMX20_04172 0.10 -0.2
4,373,849 - MPMX20_04172 0.11 -0.0
4,373,850 - MPMX20_04172 0.11 -0.1
4,373,889 + MPMX20_04172 0.13 +1.6
4,373,889 + MPMX20_04172 0.13 -1.3
4,373,911 + MPMX20_04172 0.14 +0.1
4,373,914 - MPMX20_04172 0.14 +0.8
4,373,919 - MPMX20_04172 0.14 +1.4
4,373,933 - MPMX20_04172 0.15 +1.2
4,374,019 + MPMX20_04172 0.19 -1.5
4,374,042 - MPMX20_04172 0.20 -0.9
4,374,126 - MPMX20_04172 0.24 -1.6
4,374,153 + MPMX20_04172 0.26 -2.1
4,374,194 + MPMX20_04172 0.27 -1.4
4,374,264 + MPMX20_04172 0.31 +0.6
4,374,264 + MPMX20_04172 0.31 -1.0
4,374,269 + MPMX20_04172 0.31 -0.4
4,374,272 - MPMX20_04172 0.31 -0.7
4,374,351 + MPMX20_04172 0.35 -1.4
4,374,354 - MPMX20_04172 0.35 +1.4
4,374,354 - MPMX20_04172 0.35 +0.4
4,374,357 + MPMX20_04172 0.35 +0.2
4,374,459 - MPMX20_04172 0.40 +1.4

Or see this region's nucleotide sequence