Experiment: 0.1X LB plate, Mixed culture; Bacillus pumilus TBS_051 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04060 and MPMX20_04061 overlap by 7 nucleotides MPMX20_04061 and MPMX20_04062 are separated by 211 nucleotides MPMX20_04062 and MPMX20_04063 are separated by 7 nucleotides MPMX20_04063 and MPMX20_04064 are separated by 89 nucleotides
MPMX20_04060: MPMX20_04060 - hypothetical protein, at 4,256,952 to 4,257,455
_04060
MPMX20_04061: MPMX20_04061 - Ubiquinone biosynthesis accessory factor UbiJ, at 4,257,449 to 4,257,973
_04061
MPMX20_04062: MPMX20_04062 - putative protease YhbU, at 4,258,185 to 4,259,180
_04062
MPMX20_04063: MPMX20_04063 - hypothetical protein, at 4,259,188 to 4,260,066
_04063
MPMX20_04064: MPMX20_04064 - hypothetical protein, at 4,260,156 to 4,261,163
_04064
Position (kb)
4258
4259
4260 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 4257.252 kb on - strand, within MPMX20_04060 at 4257.254 kb on - strand, within MPMX20_04060 at 4257.259 kb on - strand, within MPMX20_04060 at 4257.297 kb on + strand, within MPMX20_04060 at 4257.297 kb on + strand, within MPMX20_04060 at 4257.297 kb on + strand, within MPMX20_04060 at 4257.366 kb on - strand, within MPMX20_04060 at 4257.376 kb on + strand, within MPMX20_04060 at 4257.418 kb on - strand at 4257.447 kb on + strand at 4257.494 kb on + strand at 4257.663 kb on - strand, within MPMX20_04061 at 4257.677 kb on + strand, within MPMX20_04061 at 4257.707 kb on + strand, within MPMX20_04061 at 4257.715 kb on - strand, within MPMX20_04061 at 4257.715 kb on - strand, within MPMX20_04061 at 4257.715 kb on - strand, within MPMX20_04061 at 4257.754 kb on + strand, within MPMX20_04061 at 4257.768 kb on - strand, within MPMX20_04061 at 4257.775 kb on + strand, within MPMX20_04061 at 4257.790 kb on + strand, within MPMX20_04061 at 4257.798 kb on - strand, within MPMX20_04061 at 4257.798 kb on - strand, within MPMX20_04061 at 4257.804 kb on - strand, within MPMX20_04061 at 4257.804 kb on - strand, within MPMX20_04061 at 4257.833 kb on + strand, within MPMX20_04061 at 4257.841 kb on - strand, within MPMX20_04061 at 4257.868 kb on - strand, within MPMX20_04061 at 4257.880 kb on - strand, within MPMX20_04061 at 4257.948 kb on - strand at 4257.992 kb on + strand at 4258.023 kb on + strand at 4258.028 kb on + strand at 4258.053 kb on + strand at 4258.060 kb on + strand at 4258.060 kb on + strand at 4258.061 kb on - strand at 4258.081 kb on + strand at 4258.193 kb on + strand at 4258.193 kb on + strand at 4258.196 kb on - strand at 4258.201 kb on - strand at 4258.201 kb on - strand at 4258.228 kb on - strand at 4258.254 kb on + strand at 4258.301 kb on + strand, within MPMX20_04062 at 4258.309 kb on - strand, within MPMX20_04062 at 4258.332 kb on + strand, within MPMX20_04062 at 4258.338 kb on + strand, within MPMX20_04062 at 4258.357 kb on + strand, within MPMX20_04062 at 4258.427 kb on + strand, within MPMX20_04062 at 4258.427 kb on + strand, within MPMX20_04062 at 4258.427 kb on + strand, within MPMX20_04062 at 4258.435 kb on - strand, within MPMX20_04062 at 4258.479 kb on + strand, within MPMX20_04062 at 4258.515 kb on - strand, within MPMX20_04062 at 4258.574 kb on + strand, within MPMX20_04062 at 4258.626 kb on - strand, within MPMX20_04062 at 4258.659 kb on - strand, within MPMX20_04062 at 4258.750 kb on - strand, within MPMX20_04062 at 4258.752 kb on + strand, within MPMX20_04062 at 4258.752 kb on + strand, within MPMX20_04062 at 4258.877 kb on + strand, within MPMX20_04062 at 4258.957 kb on + strand, within MPMX20_04062 at 4259.043 kb on + strand, within MPMX20_04062 at 4259.137 kb on - strand at 4259.137 kb on - strand at 4259.217 kb on - strand at 4259.217 kb on - strand at 4259.217 kb on - strand at 4259.225 kb on - strand at 4259.230 kb on - strand at 4259.393 kb on - strand, within MPMX20_04063 at 4259.401 kb on + strand, within MPMX20_04063 at 4259.409 kb on - strand, within MPMX20_04063 at 4259.411 kb on + strand, within MPMX20_04063 at 4259.419 kb on - strand, within MPMX20_04063 at 4259.428 kb on + strand, within MPMX20_04063 at 4259.428 kb on + strand, within MPMX20_04063 at 4259.436 kb on - strand, within MPMX20_04063 at 4259.446 kb on - strand, within MPMX20_04063 at 4259.485 kb on + strand, within MPMX20_04063 at 4259.493 kb on - strand, within MPMX20_04063 at 4259.668 kb on - strand, within MPMX20_04063 at 4259.688 kb on + strand, within MPMX20_04063 at 4259.691 kb on - strand, within MPMX20_04063 at 4259.698 kb on - strand, within MPMX20_04063 at 4259.709 kb on + strand, within MPMX20_04063 at 4259.717 kb on - strand, within MPMX20_04063 at 4259.717 kb on - strand, within MPMX20_04063 at 4259.866 kb on + strand, within MPMX20_04063 at 4259.866 kb on + strand, within MPMX20_04063 at 4259.874 kb on - strand, within MPMX20_04063 at 4259.874 kb on - strand, within MPMX20_04063 at 4259.874 kb on - strand, within MPMX20_04063 at 4259.907 kb on + strand, within MPMX20_04063 at 4259.915 kb on - strand, within MPMX20_04063 at 4260.026 kb on - strand at 4260.037 kb on - strand at 4260.153 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Bacillus pumilus TBS_051 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 4,257,252 - MPMX20_04060 0.60 -0.2 4,257,254 - MPMX20_04060 0.60 -0.9 4,257,259 - MPMX20_04060 0.61 +2.4 4,257,297 + MPMX20_04060 0.68 +2.6 4,257,297 + MPMX20_04060 0.68 +2.0 4,257,297 + MPMX20_04060 0.68 +2.4 4,257,366 - MPMX20_04060 0.82 +0.3 4,257,376 + MPMX20_04060 0.84 +2.0 4,257,418 - +0.7 4,257,447 + -0.4 4,257,494 + +0.1 4,257,663 - MPMX20_04061 0.41 -0.8 4,257,677 + MPMX20_04061 0.43 -0.6 4,257,707 + MPMX20_04061 0.49 +1.4 4,257,715 - MPMX20_04061 0.51 +0.4 4,257,715 - MPMX20_04061 0.51 +3.3 4,257,715 - MPMX20_04061 0.51 +0.4 4,257,754 + MPMX20_04061 0.58 -0.3 4,257,768 - MPMX20_04061 0.61 +0.3 4,257,775 + MPMX20_04061 0.62 +0.1 4,257,790 + MPMX20_04061 0.65 -0.7 4,257,798 - MPMX20_04061 0.66 -1.2 4,257,798 - MPMX20_04061 0.66 -2.2 4,257,804 - MPMX20_04061 0.68 -0.2 4,257,804 - MPMX20_04061 0.68 +0.4 4,257,833 + MPMX20_04061 0.73 +0.0 4,257,841 - MPMX20_04061 0.75 +4.0 4,257,868 - MPMX20_04061 0.80 -1.0 4,257,880 - MPMX20_04061 0.82 +0.3 4,257,948 - -1.0 4,257,992 + +0.2 4,258,023 + +1.2 4,258,028 + -0.8 4,258,053 + +0.6 4,258,060 + +0.2 4,258,060 + +2.1 4,258,061 - -1.8 4,258,081 + +1.4 4,258,193 + -0.5 4,258,193 + +0.2 4,258,196 - +1.2 4,258,201 - +0.1 4,258,201 - -0.8 4,258,228 - -1.0 4,258,254 + +0.4 4,258,301 + MPMX20_04062 0.12 -1.3 4,258,309 - MPMX20_04062 0.12 -0.7 4,258,332 + MPMX20_04062 0.15 +0.6 4,258,338 + MPMX20_04062 0.15 +1.4 4,258,357 + MPMX20_04062 0.17 +0.8 4,258,427 + MPMX20_04062 0.24 +1.8 4,258,427 + MPMX20_04062 0.24 -1.5 4,258,427 + MPMX20_04062 0.24 -0.4 4,258,435 - MPMX20_04062 0.25 +2.4 4,258,479 + MPMX20_04062 0.30 +1.0 4,258,515 - MPMX20_04062 0.33 +1.8 4,258,574 + MPMX20_04062 0.39 -0.5 4,258,626 - MPMX20_04062 0.44 +1.2 4,258,659 - MPMX20_04062 0.48 -1.1 4,258,750 - MPMX20_04062 0.57 +1.1 4,258,752 + MPMX20_04062 0.57 -1.1 4,258,752 + MPMX20_04062 0.57 -0.3 4,258,877 + MPMX20_04062 0.69 -0.3 4,258,957 + MPMX20_04062 0.78 -1.8 4,259,043 + MPMX20_04062 0.86 -0.0 4,259,137 - -0.9 4,259,137 - -1.2 4,259,217 - +0.4 4,259,217 - -0.6 4,259,217 - +1.2 4,259,225 - -0.5 4,259,230 - -1.3 4,259,393 - MPMX20_04063 0.23 +0.7 4,259,401 + MPMX20_04063 0.24 -0.7 4,259,409 - MPMX20_04063 0.25 -2.3 4,259,411 + MPMX20_04063 0.25 +0.5 4,259,419 - MPMX20_04063 0.26 -0.9 4,259,428 + MPMX20_04063 0.27 -3.1 4,259,428 + MPMX20_04063 0.27 -0.0 4,259,436 - MPMX20_04063 0.28 +1.4 4,259,446 - MPMX20_04063 0.29 -0.8 4,259,485 + MPMX20_04063 0.34 -0.7 4,259,493 - MPMX20_04063 0.35 +0.4 4,259,668 - MPMX20_04063 0.55 -2.2 4,259,688 + MPMX20_04063 0.57 +0.3 4,259,691 - MPMX20_04063 0.57 -1.7 4,259,698 - MPMX20_04063 0.58 -1.2 4,259,709 + MPMX20_04063 0.59 -0.3 4,259,717 - MPMX20_04063 0.60 -0.7 4,259,717 - MPMX20_04063 0.60 -0.1 4,259,866 + MPMX20_04063 0.77 -0.8 4,259,866 + MPMX20_04063 0.77 -0.3 4,259,874 - MPMX20_04063 0.78 -0.9 4,259,874 - MPMX20_04063 0.78 +1.4 4,259,874 - MPMX20_04063 0.78 -0.7 4,259,907 + MPMX20_04063 0.82 -1.2 4,259,915 - MPMX20_04063 0.83 -0.9 4,260,026 - -0.7 4,260,037 - -3.0 4,260,153 - -1.0
Or see this region's nucleotide sequence