Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04062

Experiment: 0.1X LB plate, Mixed culture; Bacillus pumilus TBS_051 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_04060 and MPMX20_04061 overlap by 7 nucleotidesMPMX20_04061 and MPMX20_04062 are separated by 211 nucleotidesMPMX20_04062 and MPMX20_04063 are separated by 7 nucleotidesMPMX20_04063 and MPMX20_04064 are separated by 89 nucleotides MPMX20_04060: MPMX20_04060 - hypothetical protein, at 4,256,952 to 4,257,455 _04060 MPMX20_04061: MPMX20_04061 - Ubiquinone biosynthesis accessory factor UbiJ, at 4,257,449 to 4,257,973 _04061 MPMX20_04062: MPMX20_04062 - putative protease YhbU, at 4,258,185 to 4,259,180 _04062 MPMX20_04063: MPMX20_04063 - hypothetical protein, at 4,259,188 to 4,260,066 _04063 MPMX20_04064: MPMX20_04064 - hypothetical protein, at 4,260,156 to 4,261,163 _04064 Position (kb) 4258 4259 4260Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4257.252 kb on - strand, within MPMX20_04060at 4257.254 kb on - strand, within MPMX20_04060at 4257.259 kb on - strand, within MPMX20_04060at 4257.297 kb on + strand, within MPMX20_04060at 4257.297 kb on + strand, within MPMX20_04060at 4257.297 kb on + strand, within MPMX20_04060at 4257.366 kb on - strand, within MPMX20_04060at 4257.376 kb on + strand, within MPMX20_04060at 4257.418 kb on - strandat 4257.447 kb on + strandat 4257.494 kb on + strandat 4257.663 kb on - strand, within MPMX20_04061at 4257.677 kb on + strand, within MPMX20_04061at 4257.707 kb on + strand, within MPMX20_04061at 4257.715 kb on - strand, within MPMX20_04061at 4257.715 kb on - strand, within MPMX20_04061at 4257.715 kb on - strand, within MPMX20_04061at 4257.754 kb on + strand, within MPMX20_04061at 4257.768 kb on - strand, within MPMX20_04061at 4257.775 kb on + strand, within MPMX20_04061at 4257.790 kb on + strand, within MPMX20_04061at 4257.798 kb on - strand, within MPMX20_04061at 4257.798 kb on - strand, within MPMX20_04061at 4257.804 kb on - strand, within MPMX20_04061at 4257.804 kb on - strand, within MPMX20_04061at 4257.833 kb on + strand, within MPMX20_04061at 4257.841 kb on - strand, within MPMX20_04061at 4257.868 kb on - strand, within MPMX20_04061at 4257.880 kb on - strand, within MPMX20_04061at 4257.948 kb on - strandat 4257.992 kb on + strandat 4258.023 kb on + strandat 4258.028 kb on + strandat 4258.053 kb on + strandat 4258.060 kb on + strandat 4258.060 kb on + strandat 4258.061 kb on - strandat 4258.081 kb on + strandat 4258.193 kb on + strandat 4258.193 kb on + strandat 4258.196 kb on - strandat 4258.201 kb on - strandat 4258.201 kb on - strandat 4258.228 kb on - strandat 4258.254 kb on + strandat 4258.301 kb on + strand, within MPMX20_04062at 4258.309 kb on - strand, within MPMX20_04062at 4258.332 kb on + strand, within MPMX20_04062at 4258.338 kb on + strand, within MPMX20_04062at 4258.357 kb on + strand, within MPMX20_04062at 4258.427 kb on + strand, within MPMX20_04062at 4258.427 kb on + strand, within MPMX20_04062at 4258.427 kb on + strand, within MPMX20_04062at 4258.435 kb on - strand, within MPMX20_04062at 4258.479 kb on + strand, within MPMX20_04062at 4258.515 kb on - strand, within MPMX20_04062at 4258.574 kb on + strand, within MPMX20_04062at 4258.626 kb on - strand, within MPMX20_04062at 4258.659 kb on - strand, within MPMX20_04062at 4258.750 kb on - strand, within MPMX20_04062at 4258.752 kb on + strand, within MPMX20_04062at 4258.752 kb on + strand, within MPMX20_04062at 4258.877 kb on + strand, within MPMX20_04062at 4258.957 kb on + strand, within MPMX20_04062at 4259.043 kb on + strand, within MPMX20_04062at 4259.137 kb on - strandat 4259.137 kb on - strandat 4259.217 kb on - strandat 4259.217 kb on - strandat 4259.217 kb on - strandat 4259.225 kb on - strandat 4259.230 kb on - strandat 4259.393 kb on - strand, within MPMX20_04063at 4259.401 kb on + strand, within MPMX20_04063at 4259.409 kb on - strand, within MPMX20_04063at 4259.411 kb on + strand, within MPMX20_04063at 4259.419 kb on - strand, within MPMX20_04063at 4259.428 kb on + strand, within MPMX20_04063at 4259.428 kb on + strand, within MPMX20_04063at 4259.436 kb on - strand, within MPMX20_04063at 4259.446 kb on - strand, within MPMX20_04063at 4259.485 kb on + strand, within MPMX20_04063at 4259.493 kb on - strand, within MPMX20_04063at 4259.668 kb on - strand, within MPMX20_04063at 4259.688 kb on + strand, within MPMX20_04063at 4259.691 kb on - strand, within MPMX20_04063at 4259.698 kb on - strand, within MPMX20_04063at 4259.709 kb on + strand, within MPMX20_04063at 4259.717 kb on - strand, within MPMX20_04063at 4259.717 kb on - strand, within MPMX20_04063at 4259.866 kb on + strand, within MPMX20_04063at 4259.866 kb on + strand, within MPMX20_04063at 4259.874 kb on - strand, within MPMX20_04063at 4259.874 kb on - strand, within MPMX20_04063at 4259.874 kb on - strand, within MPMX20_04063at 4259.907 kb on + strand, within MPMX20_04063at 4259.915 kb on - strand, within MPMX20_04063at 4260.026 kb on - strandat 4260.037 kb on - strandat 4260.153 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Bacillus pumilus TBS_051 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
remove
4,257,252 - MPMX20_04060 0.60 -0.2
4,257,254 - MPMX20_04060 0.60 -0.9
4,257,259 - MPMX20_04060 0.61 +2.4
4,257,297 + MPMX20_04060 0.68 +2.6
4,257,297 + MPMX20_04060 0.68 +2.0
4,257,297 + MPMX20_04060 0.68 +2.4
4,257,366 - MPMX20_04060 0.82 +0.3
4,257,376 + MPMX20_04060 0.84 +2.0
4,257,418 - +0.7
4,257,447 + -0.4
4,257,494 + +0.1
4,257,663 - MPMX20_04061 0.41 -0.8
4,257,677 + MPMX20_04061 0.43 -0.6
4,257,707 + MPMX20_04061 0.49 +1.4
4,257,715 - MPMX20_04061 0.51 +0.4
4,257,715 - MPMX20_04061 0.51 +3.3
4,257,715 - MPMX20_04061 0.51 +0.4
4,257,754 + MPMX20_04061 0.58 -0.3
4,257,768 - MPMX20_04061 0.61 +0.3
4,257,775 + MPMX20_04061 0.62 +0.1
4,257,790 + MPMX20_04061 0.65 -0.7
4,257,798 - MPMX20_04061 0.66 -1.2
4,257,798 - MPMX20_04061 0.66 -2.2
4,257,804 - MPMX20_04061 0.68 -0.2
4,257,804 - MPMX20_04061 0.68 +0.4
4,257,833 + MPMX20_04061 0.73 +0.0
4,257,841 - MPMX20_04061 0.75 +4.0
4,257,868 - MPMX20_04061 0.80 -1.0
4,257,880 - MPMX20_04061 0.82 +0.3
4,257,948 - -1.0
4,257,992 + +0.2
4,258,023 + +1.2
4,258,028 + -0.8
4,258,053 + +0.6
4,258,060 + +0.2
4,258,060 + +2.1
4,258,061 - -1.8
4,258,081 + +1.4
4,258,193 + -0.5
4,258,193 + +0.2
4,258,196 - +1.2
4,258,201 - +0.1
4,258,201 - -0.8
4,258,228 - -1.0
4,258,254 + +0.4
4,258,301 + MPMX20_04062 0.12 -1.3
4,258,309 - MPMX20_04062 0.12 -0.7
4,258,332 + MPMX20_04062 0.15 +0.6
4,258,338 + MPMX20_04062 0.15 +1.4
4,258,357 + MPMX20_04062 0.17 +0.8
4,258,427 + MPMX20_04062 0.24 +1.8
4,258,427 + MPMX20_04062 0.24 -1.5
4,258,427 + MPMX20_04062 0.24 -0.4
4,258,435 - MPMX20_04062 0.25 +2.4
4,258,479 + MPMX20_04062 0.30 +1.0
4,258,515 - MPMX20_04062 0.33 +1.8
4,258,574 + MPMX20_04062 0.39 -0.5
4,258,626 - MPMX20_04062 0.44 +1.2
4,258,659 - MPMX20_04062 0.48 -1.1
4,258,750 - MPMX20_04062 0.57 +1.1
4,258,752 + MPMX20_04062 0.57 -1.1
4,258,752 + MPMX20_04062 0.57 -0.3
4,258,877 + MPMX20_04062 0.69 -0.3
4,258,957 + MPMX20_04062 0.78 -1.8
4,259,043 + MPMX20_04062 0.86 -0.0
4,259,137 - -0.9
4,259,137 - -1.2
4,259,217 - +0.4
4,259,217 - -0.6
4,259,217 - +1.2
4,259,225 - -0.5
4,259,230 - -1.3
4,259,393 - MPMX20_04063 0.23 +0.7
4,259,401 + MPMX20_04063 0.24 -0.7
4,259,409 - MPMX20_04063 0.25 -2.3
4,259,411 + MPMX20_04063 0.25 +0.5
4,259,419 - MPMX20_04063 0.26 -0.9
4,259,428 + MPMX20_04063 0.27 -3.1
4,259,428 + MPMX20_04063 0.27 -0.0
4,259,436 - MPMX20_04063 0.28 +1.4
4,259,446 - MPMX20_04063 0.29 -0.8
4,259,485 + MPMX20_04063 0.34 -0.7
4,259,493 - MPMX20_04063 0.35 +0.4
4,259,668 - MPMX20_04063 0.55 -2.2
4,259,688 + MPMX20_04063 0.57 +0.3
4,259,691 - MPMX20_04063 0.57 -1.7
4,259,698 - MPMX20_04063 0.58 -1.2
4,259,709 + MPMX20_04063 0.59 -0.3
4,259,717 - MPMX20_04063 0.60 -0.7
4,259,717 - MPMX20_04063 0.60 -0.1
4,259,866 + MPMX20_04063 0.77 -0.8
4,259,866 + MPMX20_04063 0.77 -0.3
4,259,874 - MPMX20_04063 0.78 -0.9
4,259,874 - MPMX20_04063 0.78 +1.4
4,259,874 - MPMX20_04063 0.78 -0.7
4,259,907 + MPMX20_04063 0.82 -1.2
4,259,915 - MPMX20_04063 0.83 -0.9
4,260,026 - -0.7
4,260,037 - -3.0
4,260,153 - -1.0

Or see this region's nucleotide sequence