Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03799

Experiment: 0.1X LB plate, Mixed culture; Bacillus pumilus TBS_051 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_03798 and MPMX20_03799 are separated by 208 nucleotidesMPMX20_03799 and MPMX20_03800 are separated by 802 nucleotides MPMX20_03798: MPMX20_03798 - Agmatinase, at 4,002,472 to 4,003,392 _03798 MPMX20_03799: MPMX20_03799 - Biosynthetic arginine decarboxylase, at 4,003,601 to 4,005,577 _03799 MPMX20_03800: MPMX20_03800 - S-adenosylmethionine synthase, at 4,006,380 to 4,007,534 _03800 Position (kb) 4003 4004 4005 4006Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7 8 9at 4002.603 kb on - strand, within MPMX20_03798at 4002.634 kb on + strand, within MPMX20_03798at 4002.687 kb on + strand, within MPMX20_03798at 4002.695 kb on - strand, within MPMX20_03798at 4002.770 kb on + strand, within MPMX20_03798at 4002.816 kb on - strand, within MPMX20_03798at 4002.817 kb on - strand, within MPMX20_03798at 4002.855 kb on + strand, within MPMX20_03798at 4002.859 kb on - strand, within MPMX20_03798at 4002.864 kb on - strand, within MPMX20_03798at 4002.865 kb on + strand, within MPMX20_03798at 4002.873 kb on - strand, within MPMX20_03798at 4002.887 kb on + strand, within MPMX20_03798at 4002.887 kb on + strand, within MPMX20_03798at 4002.887 kb on + strand, within MPMX20_03798at 4002.887 kb on + strand, within MPMX20_03798at 4002.895 kb on - strand, within MPMX20_03798at 4002.895 kb on - strand, within MPMX20_03798at 4002.939 kb on - strand, within MPMX20_03798at 4003.015 kb on + strand, within MPMX20_03798at 4003.059 kb on + strand, within MPMX20_03798at 4003.072 kb on + strand, within MPMX20_03798at 4003.072 kb on + strand, within MPMX20_03798at 4003.111 kb on + strand, within MPMX20_03798at 4003.111 kb on + strand, within MPMX20_03798at 4003.111 kb on + strand, within MPMX20_03798at 4003.117 kb on + strand, within MPMX20_03798at 4003.125 kb on - strand, within MPMX20_03798at 4003.202 kb on + strand, within MPMX20_03798at 4003.205 kb on - strand, within MPMX20_03798at 4003.210 kb on - strand, within MPMX20_03798at 4003.261 kb on - strand, within MPMX20_03798at 4003.279 kb on + strand, within MPMX20_03798at 4003.319 kb on - strandat 4003.393 kb on + strandat 4003.401 kb on - strandat 4003.401 kb on - strandat 4003.411 kb on - strandat 4003.418 kb on + strandat 4003.535 kb on + strandat 4003.543 kb on - strandat 4003.543 kb on - strandat 4003.546 kb on + strandat 4003.555 kb on - strandat 4003.582 kb on - strandat 4003.584 kb on + strandat 4003.584 kb on + strandat 4003.627 kb on - strandat 4003.638 kb on + strandat 4003.676 kb on + strandat 4003.763 kb on + strandat 4003.773 kb on + strandat 4003.778 kb on + strandat 4003.783 kb on + strandat 4003.799 kb on + strand, within MPMX20_03799at 4003.825 kb on - strand, within MPMX20_03799at 4003.846 kb on + strand, within MPMX20_03799at 4003.854 kb on - strand, within MPMX20_03799at 4003.878 kb on + strand, within MPMX20_03799at 4003.929 kb on + strand, within MPMX20_03799at 4003.997 kb on + strand, within MPMX20_03799at 4004.014 kb on - strand, within MPMX20_03799at 4004.036 kb on + strand, within MPMX20_03799at 4004.066 kb on - strand, within MPMX20_03799at 4004.149 kb on - strand, within MPMX20_03799at 4004.149 kb on - strand, within MPMX20_03799at 4004.178 kb on - strand, within MPMX20_03799at 4004.178 kb on - strand, within MPMX20_03799at 4004.191 kb on + strand, within MPMX20_03799at 4004.197 kb on + strand, within MPMX20_03799at 4004.235 kb on + strand, within MPMX20_03799at 4004.243 kb on - strand, within MPMX20_03799at 4004.243 kb on - strand, within MPMX20_03799at 4004.351 kb on + strand, within MPMX20_03799at 4004.367 kb on - strand, within MPMX20_03799at 4004.408 kb on - strand, within MPMX20_03799at 4004.464 kb on + strand, within MPMX20_03799at 4004.530 kb on + strand, within MPMX20_03799at 4004.541 kb on - strand, within MPMX20_03799at 4004.592 kb on - strand, within MPMX20_03799at 4004.592 kb on - strand, within MPMX20_03799at 4004.603 kb on + strand, within MPMX20_03799at 4004.603 kb on + strand, within MPMX20_03799at 4004.682 kb on - strand, within MPMX20_03799at 4004.709 kb on + strand, within MPMX20_03799at 4004.776 kb on + strand, within MPMX20_03799at 4004.776 kb on + strand, within MPMX20_03799at 4004.786 kb on + strand, within MPMX20_03799at 4004.929 kb on + strand, within MPMX20_03799at 4004.936 kb on + strand, within MPMX20_03799at 4005.052 kb on + strand, within MPMX20_03799at 4005.052 kb on + strand, within MPMX20_03799at 4005.060 kb on - strand, within MPMX20_03799at 4005.060 kb on - strand, within MPMX20_03799at 4005.081 kb on - strand, within MPMX20_03799at 4005.083 kb on + strand, within MPMX20_03799at 4005.108 kb on + strand, within MPMX20_03799at 4005.164 kb on - strand, within MPMX20_03799at 4005.204 kb on + strand, within MPMX20_03799at 4005.303 kb on + strand, within MPMX20_03799at 4005.303 kb on + strand, within MPMX20_03799at 4005.303 kb on + strand, within MPMX20_03799at 4005.303 kb on + strand, within MPMX20_03799at 4005.305 kb on + strand, within MPMX20_03799at 4005.308 kb on + strand, within MPMX20_03799at 4005.311 kb on - strand, within MPMX20_03799at 4005.323 kb on + strand, within MPMX20_03799at 4005.329 kb on + strand, within MPMX20_03799at 4005.337 kb on - strand, within MPMX20_03799at 4005.393 kb on - strandat 4005.415 kb on - strandat 4005.415 kb on - strandat 4005.429 kb on + strandat 4005.480 kb on - strandat 4005.487 kb on + strandat 4005.487 kb on + strandat 4005.495 kb on - strandat 4005.631 kb on + strandat 4005.637 kb on - strandat 4005.637 kb on - strandat 4005.694 kb on - strandat 4005.780 kb on - strandat 4005.786 kb on - strandat 4005.806 kb on - strandat 4005.808 kb on - strandat 4005.826 kb on - strandat 4005.828 kb on + strandat 4005.854 kb on - strandat 4005.854 kb on - strandat 4005.854 kb on - strandat 4005.854 kb on - strandat 4005.856 kb on + strandat 4005.856 kb on + strandat 4005.872 kb on + strandat 4006.022 kb on + strandat 4006.022 kb on + strandat 4006.030 kb on - strandat 4006.030 kb on - strandat 4006.080 kb on - strandat 4006.080 kb on - strandat 4006.182 kb on + strandat 4006.190 kb on - strandat 4006.246 kb on + strandat 4006.301 kb on + strandat 4006.329 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Bacillus pumilus TBS_051 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
remove
4,002,603 - MPMX20_03798 0.14 +0.4
4,002,634 + MPMX20_03798 0.18 -0.6
4,002,687 + MPMX20_03798 0.23 -2.4
4,002,695 - MPMX20_03798 0.24 -0.4
4,002,770 + MPMX20_03798 0.32 -0.7
4,002,816 - MPMX20_03798 0.37 -1.0
4,002,817 - MPMX20_03798 0.37 -0.2
4,002,855 + MPMX20_03798 0.42 -1.5
4,002,859 - MPMX20_03798 0.42 -0.2
4,002,864 - MPMX20_03798 0.43 +0.9
4,002,865 + MPMX20_03798 0.43 -2.5
4,002,873 - MPMX20_03798 0.44 -1.4
4,002,887 + MPMX20_03798 0.45 -2.8
4,002,887 + MPMX20_03798 0.45 +0.4
4,002,887 + MPMX20_03798 0.45 +0.1
4,002,887 + MPMX20_03798 0.45 -1.3
4,002,895 - MPMX20_03798 0.46 -1.6
4,002,895 - MPMX20_03798 0.46 +0.3
4,002,939 - MPMX20_03798 0.51 -2.9
4,003,015 + MPMX20_03798 0.59 +1.2
4,003,059 + MPMX20_03798 0.64 -0.4
4,003,072 + MPMX20_03798 0.65 -1.0
4,003,072 + MPMX20_03798 0.65 -1.4
4,003,111 + MPMX20_03798 0.69 -0.7
4,003,111 + MPMX20_03798 0.69 -0.7
4,003,111 + MPMX20_03798 0.69 -0.6
4,003,117 + MPMX20_03798 0.70 -0.4
4,003,125 - MPMX20_03798 0.71 +0.8
4,003,202 + MPMX20_03798 0.79 +0.1
4,003,205 - MPMX20_03798 0.80 -0.7
4,003,210 - MPMX20_03798 0.80 -0.8
4,003,261 - MPMX20_03798 0.86 -1.2
4,003,279 + MPMX20_03798 0.88 -0.4
4,003,319 - -1.2
4,003,393 + -1.0
4,003,401 - -0.4
4,003,401 - -0.6
4,003,411 - -0.2
4,003,418 + -1.4
4,003,535 + +0.1
4,003,543 - -0.2
4,003,543 - -0.5
4,003,546 + -0.2
4,003,555 - +0.6
4,003,582 - -0.6
4,003,584 + +0.4
4,003,584 + +0.7
4,003,627 - +0.6
4,003,638 + +1.4
4,003,676 + +0.8
4,003,763 + -0.2
4,003,773 + +1.1
4,003,778 + +0.8
4,003,783 + -0.7
4,003,799 + MPMX20_03799 0.10 -0.2
4,003,825 - MPMX20_03799 0.11 +0.0
4,003,846 + MPMX20_03799 0.12 -1.4
4,003,854 - MPMX20_03799 0.13 +0.4
4,003,878 + MPMX20_03799 0.14 -1.5
4,003,929 + MPMX20_03799 0.17 +0.1
4,003,997 + MPMX20_03799 0.20 -0.7
4,004,014 - MPMX20_03799 0.21 -1.2
4,004,036 + MPMX20_03799 0.22 -0.3
4,004,066 - MPMX20_03799 0.24 -2.0
4,004,149 - MPMX20_03799 0.28 +0.8
4,004,149 - MPMX20_03799 0.28 +2.4
4,004,178 - MPMX20_03799 0.29 +0.7
4,004,178 - MPMX20_03799 0.29 -0.4
4,004,191 + MPMX20_03799 0.30 +0.4
4,004,197 + MPMX20_03799 0.30 +1.7
4,004,235 + MPMX20_03799 0.32 +1.0
4,004,243 - MPMX20_03799 0.32 +0.1
4,004,243 - MPMX20_03799 0.32 +0.8
4,004,351 + MPMX20_03799 0.38 +0.8
4,004,367 - MPMX20_03799 0.39 -0.2
4,004,408 - MPMX20_03799 0.41 -0.6
4,004,464 + MPMX20_03799 0.44 -0.9
4,004,530 + MPMX20_03799 0.47 -0.8
4,004,541 - MPMX20_03799 0.48 +3.0
4,004,592 - MPMX20_03799 0.50 +8.8
4,004,592 - MPMX20_03799 0.50 -2.3
4,004,603 + MPMX20_03799 0.51 -0.2
4,004,603 + MPMX20_03799 0.51 -1.1
4,004,682 - MPMX20_03799 0.55 +2.4
4,004,709 + MPMX20_03799 0.56 +1.8
4,004,776 + MPMX20_03799 0.59 +0.8
4,004,776 + MPMX20_03799 0.59 +1.0
4,004,786 + MPMX20_03799 0.60 +0.9
4,004,929 + MPMX20_03799 0.67 -0.7
4,004,936 + MPMX20_03799 0.68 +2.4
4,005,052 + MPMX20_03799 0.73 -0.6
4,005,052 + MPMX20_03799 0.73 +1.1
4,005,060 - MPMX20_03799 0.74 -0.7
4,005,060 - MPMX20_03799 0.74 -2.3
4,005,081 - MPMX20_03799 0.75 +1.1
4,005,083 + MPMX20_03799 0.75 +1.4
4,005,108 + MPMX20_03799 0.76 +0.4
4,005,164 - MPMX20_03799 0.79 -1.7
4,005,204 + MPMX20_03799 0.81 +0.7
4,005,303 + MPMX20_03799 0.86 +0.7
4,005,303 + MPMX20_03799 0.86 -1.9
4,005,303 + MPMX20_03799 0.86 +2.4
4,005,303 + MPMX20_03799 0.86 -2.0
4,005,305 + MPMX20_03799 0.86 -2.4
4,005,308 + MPMX20_03799 0.86 +1.4
4,005,311 - MPMX20_03799 0.86 -0.0
4,005,323 + MPMX20_03799 0.87 -1.7
4,005,329 + MPMX20_03799 0.87 -0.9
4,005,337 - MPMX20_03799 0.88 -0.0
4,005,393 - -1.3
4,005,415 - +0.1
4,005,415 - -0.0
4,005,429 + -0.2
4,005,480 - -1.3
4,005,487 + -0.2
4,005,487 + -0.1
4,005,495 - -0.4
4,005,631 + +0.6
4,005,637 - +0.4
4,005,637 - +0.2
4,005,694 - +0.4
4,005,780 - +2.0
4,005,786 - +0.0
4,005,806 - -2.2
4,005,808 - +0.1
4,005,826 - -1.2
4,005,828 + -0.6
4,005,854 - -0.9
4,005,854 - -0.2
4,005,854 - +1.4
4,005,854 - +0.3
4,005,856 + +0.1
4,005,856 + -0.7
4,005,872 + -1.0
4,006,022 + +2.4
4,006,022 + -0.7
4,006,030 - +0.4
4,006,030 - -0.8
4,006,080 - +0.3
4,006,080 - -0.1
4,006,182 + -0.6
4,006,190 - +0.3
4,006,246 + -0.6
4,006,301 + -1.2
4,006,329 + +0.8

Or see this region's nucleotide sequence