Experiment: 0.1X LB plate, Mixed culture; Bacillus pumilus TBS_051 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02252 and MPMX20_02253 overlap by 1 nucleotides MPMX20_02253 and MPMX20_02254 are separated by 9 nucleotides MPMX20_02254 and MPMX20_02255 are separated by 52 nucleotides MPMX20_02255 and MPMX20_02256 are separated by 48 nucleotides
MPMX20_02252: MPMX20_02252 - hypothetical protein, at 2,365,107 to 2,366,180
_02252
MPMX20_02253: MPMX20_02253 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 2,366,180 to 2,366,977
_02253
MPMX20_02254: MPMX20_02254 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 2,366,987 to 2,367,685
_02254
MPMX20_02255: MPMX20_02255 - Metal-binding protein ZinT, at 2,367,738 to 2,368,376
_02255
MPMX20_02256: MPMX20_02256 - Na(+), Li(+), K(+)/H(+) antiporter, at 2,368,425 to 2,369,618
_02256
Position (kb)
2366
2367
2368 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2366.004 kb on - strand, within MPMX20_02252 at 2366.045 kb on + strand, within MPMX20_02252 at 2366.183 kb on - strand at 2366.252 kb on - strand at 2366.314 kb on + strand, within MPMX20_02253 at 2366.322 kb on - strand, within MPMX20_02253 at 2366.335 kb on - strand, within MPMX20_02253 at 2366.358 kb on - strand, within MPMX20_02253 at 2366.420 kb on + strand, within MPMX20_02253 at 2366.595 kb on - strand, within MPMX20_02253 at 2366.624 kb on - strand, within MPMX20_02253 at 2366.624 kb on - strand, within MPMX20_02253 at 2366.632 kb on + strand, within MPMX20_02253 at 2366.677 kb on + strand, within MPMX20_02253 at 2366.685 kb on - strand, within MPMX20_02253 at 2366.688 kb on + strand, within MPMX20_02253 at 2366.688 kb on + strand, within MPMX20_02253 at 2366.696 kb on - strand, within MPMX20_02253 at 2366.801 kb on - strand, within MPMX20_02253 at 2366.801 kb on - strand, within MPMX20_02253 at 2366.801 kb on - strand, within MPMX20_02253 at 2366.803 kb on + strand, within MPMX20_02253 at 2366.803 kb on + strand, within MPMX20_02253 at 2366.803 kb on + strand, within MPMX20_02253 at 2366.803 kb on + strand, within MPMX20_02253 at 2366.803 kb on + strand, within MPMX20_02253 at 2366.811 kb on - strand, within MPMX20_02253 at 2366.837 kb on - strand, within MPMX20_02253 at 2366.919 kb on + strand at 2366.928 kb on + strand at 2366.950 kb on + strand at 2366.974 kb on + strand at 2366.974 kb on + strand at 2367.003 kb on + strand at 2367.027 kb on + strand at 2367.123 kb on - strand, within MPMX20_02254 at 2367.123 kb on - strand, within MPMX20_02254 at 2367.131 kb on + strand, within MPMX20_02254 at 2367.187 kb on + strand, within MPMX20_02254 at 2367.220 kb on + strand, within MPMX20_02254 at 2367.271 kb on - strand, within MPMX20_02254 at 2367.324 kb on - strand, within MPMX20_02254 at 2367.514 kb on + strand, within MPMX20_02254 at 2367.576 kb on + strand, within MPMX20_02254 at 2367.587 kb on + strand, within MPMX20_02254 at 2367.587 kb on + strand, within MPMX20_02254 at 2367.628 kb on + strand at 2367.635 kb on - strand at 2367.637 kb on + strand at 2367.645 kb on - strand at 2367.782 kb on + strand at 2367.790 kb on + strand at 2367.790 kb on - strand at 2367.793 kb on - strand at 2367.797 kb on + strand at 2367.798 kb on - strand at 2367.845 kb on - strand, within MPMX20_02255 at 2367.901 kb on + strand, within MPMX20_02255 at 2367.902 kb on + strand, within MPMX20_02255 at 2368.008 kb on + strand, within MPMX20_02255 at 2368.031 kb on - strand, within MPMX20_02255 at 2368.083 kb on + strand, within MPMX20_02255 at 2368.089 kb on + strand, within MPMX20_02255 at 2368.190 kb on - strand, within MPMX20_02255 at 2368.268 kb on + strand, within MPMX20_02255 at 2368.292 kb on + strand, within MPMX20_02255 at 2368.350 kb on + strand at 2368.391 kb on - strand at 2368.454 kb on + strand at 2368.528 kb on - strand at 2368.547 kb on + strand, within MPMX20_02256 at 2368.547 kb on + strand, within MPMX20_02256 at 2368.547 kb on + strand, within MPMX20_02256 at 2368.555 kb on - strand, within MPMX20_02256 at 2368.652 kb on + strand, within MPMX20_02256 at 2368.678 kb on + strand, within MPMX20_02256
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Bacillus pumilus TBS_051 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 2,366,004 - MPMX20_02252 0.84 -1.5 2,366,045 + MPMX20_02252 0.87 -0.2 2,366,183 - -1.8 2,366,252 - -1.8 2,366,314 + MPMX20_02253 0.17 -0.4 2,366,322 - MPMX20_02253 0.18 -0.1 2,366,335 - MPMX20_02253 0.19 -1.1 2,366,358 - MPMX20_02253 0.22 -0.4 2,366,420 + MPMX20_02253 0.30 -1.6 2,366,595 - MPMX20_02253 0.52 +1.5 2,366,624 - MPMX20_02253 0.56 +0.3 2,366,624 - MPMX20_02253 0.56 +1.3 2,366,632 + MPMX20_02253 0.57 -0.3 2,366,677 + MPMX20_02253 0.62 -0.5 2,366,685 - MPMX20_02253 0.63 -0.3 2,366,688 + MPMX20_02253 0.64 -0.9 2,366,688 + MPMX20_02253 0.64 +0.3 2,366,696 - MPMX20_02253 0.65 -1.1 2,366,801 - MPMX20_02253 0.78 +0.1 2,366,801 - MPMX20_02253 0.78 +1.1 2,366,801 - MPMX20_02253 0.78 -0.3 2,366,803 + MPMX20_02253 0.78 +1.0 2,366,803 + MPMX20_02253 0.78 -0.7 2,366,803 + MPMX20_02253 0.78 -0.6 2,366,803 + MPMX20_02253 0.78 +1.3 2,366,803 + MPMX20_02253 0.78 +1.3 2,366,811 - MPMX20_02253 0.79 +0.8 2,366,837 - MPMX20_02253 0.82 +0.3 2,366,919 + +1.0 2,366,928 + +3.3 2,366,950 + -0.7 2,366,974 + -0.1 2,366,974 + +0.3 2,367,003 + +0.2 2,367,027 + -0.1 2,367,123 - MPMX20_02254 0.19 -0.0 2,367,123 - MPMX20_02254 0.19 -1.0 2,367,131 + MPMX20_02254 0.21 -1.9 2,367,187 + MPMX20_02254 0.29 -1.4 2,367,220 + MPMX20_02254 0.33 -0.0 2,367,271 - MPMX20_02254 0.41 -1.5 2,367,324 - MPMX20_02254 0.48 -1.4 2,367,514 + MPMX20_02254 0.75 +1.3 2,367,576 + MPMX20_02254 0.84 +0.2 2,367,587 + MPMX20_02254 0.86 -1.3 2,367,587 + MPMX20_02254 0.86 -0.5 2,367,628 + +2.1 2,367,635 - +1.0 2,367,637 + -1.1 2,367,645 - -2.1 2,367,782 + -0.1 2,367,790 + -0.3 2,367,790 - +1.5 2,367,793 - -0.3 2,367,797 + +0.0 2,367,798 - -1.2 2,367,845 - MPMX20_02255 0.17 -0.8 2,367,901 + MPMX20_02255 0.26 +0.3 2,367,902 + MPMX20_02255 0.26 +0.4 2,368,008 + MPMX20_02255 0.42 -0.7 2,368,031 - MPMX20_02255 0.46 -0.3 2,368,083 + MPMX20_02255 0.54 +1.2 2,368,089 + MPMX20_02255 0.55 +0.5 2,368,190 - MPMX20_02255 0.71 +0.4 2,368,268 + MPMX20_02255 0.83 +2.3 2,368,292 + MPMX20_02255 0.87 -0.8 2,368,350 + -1.1 2,368,391 - -0.0 2,368,454 + +0.3 2,368,528 - -1.1 2,368,547 + MPMX20_02256 0.10 -0.0 2,368,547 + MPMX20_02256 0.10 -0.5 2,368,547 + MPMX20_02256 0.10 -0.3 2,368,555 - MPMX20_02256 0.11 -1.1 2,368,652 + MPMX20_02256 0.19 -0.5 2,368,678 + MPMX20_02256 0.21 +0.2
Or see this region's nucleotide sequence