Experiment: 0.1X LB plate, Mixed culture; Bacillus zanthoxyli TBS_056 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04646 and MPMX20_04647 are separated by 36 nucleotides MPMX20_04647 and MPMX20_04648 are separated by 122 nucleotides MPMX20_04648 and MPMX20_04649 overlap by 32 nucleotides
MPMX20_04646: MPMX20_04646 - Quinone reductase, at 4,866,715 to 4,867,281
_04646
MPMX20_04647: MPMX20_04647 - hypothetical protein, at 4,867,318 to 4,868,064
_04647
MPMX20_04648: MPMX20_04648 - HTH-type transcriptional regulator YidZ, at 4,868,187 to 4,869,158
_04648
MPMX20_04649: MPMX20_04649 - Multidrug resistance protein MdtL, at 4,869,127 to 4,870,302
_04649
Position (kb)
4868
4869
4870 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4867.193 kb on + strand, within MPMX20_04646 at 4867.252 kb on - strand at 4867.301 kb on + strand at 4867.311 kb on + strand at 4867.334 kb on - strand at 4867.422 kb on - strand, within MPMX20_04647 at 4867.481 kb on + strand, within MPMX20_04647 at 4867.489 kb on - strand, within MPMX20_04647 at 4867.514 kb on + strand, within MPMX20_04647 at 4867.597 kb on + strand, within MPMX20_04647 at 4867.635 kb on + strand, within MPMX20_04647 at 4867.640 kb on + strand, within MPMX20_04647 at 4867.648 kb on - strand, within MPMX20_04647 at 4867.771 kb on + strand, within MPMX20_04647 at 4867.781 kb on + strand, within MPMX20_04647 at 4867.869 kb on - strand, within MPMX20_04647 at 4867.869 kb on - strand, within MPMX20_04647 at 4867.906 kb on - strand, within MPMX20_04647 at 4868.155 kb on + strand at 4868.278 kb on - strand at 4868.283 kb on - strand at 4868.310 kb on + strand, within MPMX20_04648 at 4868.325 kb on + strand, within MPMX20_04648 at 4868.334 kb on + strand, within MPMX20_04648 at 4868.356 kb on - strand, within MPMX20_04648 at 4868.357 kb on + strand, within MPMX20_04648 at 4868.385 kb on + strand, within MPMX20_04648 at 4868.390 kb on - strand, within MPMX20_04648 at 4868.393 kb on - strand, within MPMX20_04648 at 4868.410 kb on + strand, within MPMX20_04648 at 4868.441 kb on + strand, within MPMX20_04648 at 4868.449 kb on - strand, within MPMX20_04648 at 4868.456 kb on + strand, within MPMX20_04648 at 4868.528 kb on + strand, within MPMX20_04648 at 4868.536 kb on - strand, within MPMX20_04648 at 4868.561 kb on - strand, within MPMX20_04648 at 4868.570 kb on + strand, within MPMX20_04648 at 4868.571 kb on + strand, within MPMX20_04648 at 4868.571 kb on + strand, within MPMX20_04648 at 4868.571 kb on + strand, within MPMX20_04648 at 4868.636 kb on + strand, within MPMX20_04648 at 4868.673 kb on - strand, within MPMX20_04648 at 4868.701 kb on - strand, within MPMX20_04648 at 4868.751 kb on + strand, within MPMX20_04648 at 4868.759 kb on - strand, within MPMX20_04648 at 4868.783 kb on + strand, within MPMX20_04648 at 4868.791 kb on - strand, within MPMX20_04648 at 4868.826 kb on - strand, within MPMX20_04648 at 4868.873 kb on - strand, within MPMX20_04648 at 4868.883 kb on - strand, within MPMX20_04648 at 4868.883 kb on - strand, within MPMX20_04648 at 4868.973 kb on - strand, within MPMX20_04648 at 4868.976 kb on + strand, within MPMX20_04648 at 4869.034 kb on + strand, within MPMX20_04648 at 4869.059 kb on + strand, within MPMX20_04648 at 4869.125 kb on + strand at 4869.139 kb on - strand at 4869.180 kb on + strand at 4869.187 kb on - strand at 4869.197 kb on - strand at 4869.207 kb on - strand at 4869.243 kb on + strand at 4869.243 kb on + strand at 4869.243 kb on + strand at 4869.243 kb on + strand at 4869.251 kb on - strand, within MPMX20_04649 at 4869.251 kb on - strand, within MPMX20_04649 at 4869.251 kb on - strand, within MPMX20_04649 at 4869.287 kb on + strand, within MPMX20_04649 at 4869.287 kb on + strand, within MPMX20_04649 at 4869.287 kb on - strand, within MPMX20_04649 at 4869.292 kb on + strand, within MPMX20_04649 at 4869.295 kb on - strand, within MPMX20_04649 at 4869.305 kb on - strand, within MPMX20_04649 at 4869.319 kb on + strand, within MPMX20_04649 at 4869.319 kb on + strand, within MPMX20_04649 at 4869.327 kb on - strand, within MPMX20_04649 at 4869.334 kb on - strand, within MPMX20_04649 at 4869.351 kb on + strand, within MPMX20_04649 at 4869.402 kb on + strand, within MPMX20_04649 at 4869.405 kb on - strand, within MPMX20_04649 at 4869.423 kb on + strand, within MPMX20_04649 at 4869.439 kb on - strand, within MPMX20_04649 at 4869.480 kb on + strand, within MPMX20_04649 at 4869.482 kb on + strand, within MPMX20_04649 at 4869.490 kb on - strand, within MPMX20_04649 at 4869.509 kb on - strand, within MPMX20_04649 at 4869.553 kb on - strand, within MPMX20_04649 at 4869.575 kb on + strand, within MPMX20_04649 at 4869.575 kb on + strand, within MPMX20_04649 at 4869.575 kb on + strand, within MPMX20_04649 at 4869.585 kb on - strand, within MPMX20_04649 at 4869.630 kb on + strand, within MPMX20_04649 at 4869.666 kb on - strand, within MPMX20_04649 at 4869.671 kb on - strand, within MPMX20_04649 at 4869.717 kb on + strand, within MPMX20_04649 at 4869.717 kb on + strand, within MPMX20_04649 at 4869.723 kb on + strand, within MPMX20_04649 at 4869.725 kb on - strand, within MPMX20_04649 at 4869.725 kb on - strand, within MPMX20_04649 at 4869.750 kb on + strand, within MPMX20_04649 at 4869.796 kb on - strand, within MPMX20_04649 at 4869.818 kb on + strand, within MPMX20_04649 at 4869.826 kb on - strand, within MPMX20_04649 at 4869.895 kb on + strand, within MPMX20_04649 at 4869.902 kb on - strand, within MPMX20_04649 at 4870.016 kb on + strand, within MPMX20_04649 at 4870.024 kb on - strand, within MPMX20_04649 at 4870.026 kb on + strand, within MPMX20_04649 at 4870.028 kb on + strand, within MPMX20_04649 at 4870.033 kb on + strand, within MPMX20_04649 at 4870.036 kb on - strand, within MPMX20_04649 at 4870.041 kb on - strand, within MPMX20_04649 at 4870.053 kb on + strand, within MPMX20_04649 at 4870.054 kb on - strand, within MPMX20_04649 at 4870.061 kb on - strand, within MPMX20_04649 at 4870.084 kb on + strand, within MPMX20_04649 at 4870.092 kb on - strand, within MPMX20_04649
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Bacillus zanthoxyli TBS_056 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 4,867,193 + MPMX20_04646 0.84 +0.2 4,867,252 - -0.7 4,867,301 + -1.5 4,867,311 + +0.4 4,867,334 - +1.1 4,867,422 - MPMX20_04647 0.14 -2.0 4,867,481 + MPMX20_04647 0.22 -2.2 4,867,489 - MPMX20_04647 0.23 -1.1 4,867,514 + MPMX20_04647 0.26 -1.5 4,867,597 + MPMX20_04647 0.37 -1.7 4,867,635 + MPMX20_04647 0.42 +2.3 4,867,640 + MPMX20_04647 0.43 +0.7 4,867,648 - MPMX20_04647 0.44 -0.6 4,867,771 + MPMX20_04647 0.61 -0.8 4,867,781 + MPMX20_04647 0.62 -1.5 4,867,869 - MPMX20_04647 0.74 -0.5 4,867,869 - MPMX20_04647 0.74 -0.7 4,867,906 - MPMX20_04647 0.79 +0.7 4,868,155 + -0.5 4,868,278 - -0.8 4,868,283 - +0.2 4,868,310 + MPMX20_04648 0.13 +3.6 4,868,325 + MPMX20_04648 0.14 -0.2 4,868,334 + MPMX20_04648 0.15 -0.3 4,868,356 - MPMX20_04648 0.17 -0.6 4,868,357 + MPMX20_04648 0.17 +1.0 4,868,385 + MPMX20_04648 0.20 +0.6 4,868,390 - MPMX20_04648 0.21 +0.1 4,868,393 - MPMX20_04648 0.21 +0.2 4,868,410 + MPMX20_04648 0.23 -0.2 4,868,441 + MPMX20_04648 0.26 -0.3 4,868,449 - MPMX20_04648 0.27 -0.7 4,868,456 + MPMX20_04648 0.28 +0.0 4,868,528 + MPMX20_04648 0.35 -1.9 4,868,536 - MPMX20_04648 0.36 -0.5 4,868,561 - MPMX20_04648 0.38 -1.7 4,868,570 + MPMX20_04648 0.39 -0.7 4,868,571 + MPMX20_04648 0.40 -1.7 4,868,571 + MPMX20_04648 0.40 -1.0 4,868,571 + MPMX20_04648 0.40 -0.3 4,868,636 + MPMX20_04648 0.46 -0.4 4,868,673 - MPMX20_04648 0.50 +1.3 4,868,701 - MPMX20_04648 0.53 -0.1 4,868,751 + MPMX20_04648 0.58 -0.9 4,868,759 - MPMX20_04648 0.59 +1.6 4,868,783 + MPMX20_04648 0.61 -0.9 4,868,791 - MPMX20_04648 0.62 -0.7 4,868,826 - MPMX20_04648 0.66 -2.8 4,868,873 - MPMX20_04648 0.71 -1.0 4,868,883 - MPMX20_04648 0.72 -2.1 4,868,883 - MPMX20_04648 0.72 +0.7 4,868,973 - MPMX20_04648 0.81 -0.9 4,868,976 + MPMX20_04648 0.81 +3.0 4,869,034 + MPMX20_04648 0.87 -1.8 4,869,059 + MPMX20_04648 0.90 +1.7 4,869,125 + +0.4 4,869,139 - +0.6 4,869,180 + -0.9 4,869,187 - +1.3 4,869,197 - -0.0 4,869,207 - -0.1 4,869,243 + -1.7 4,869,243 + -0.4 4,869,243 + +1.1 4,869,243 + -0.9 4,869,251 - MPMX20_04649 0.11 +0.5 4,869,251 - MPMX20_04649 0.11 -0.7 4,869,251 - MPMX20_04649 0.11 -1.6 4,869,287 + MPMX20_04649 0.14 -0.7 4,869,287 + MPMX20_04649 0.14 -2.0 4,869,287 - MPMX20_04649 0.14 +1.0 4,869,292 + MPMX20_04649 0.14 -0.1 4,869,295 - MPMX20_04649 0.14 +0.3 4,869,305 - MPMX20_04649 0.15 -0.3 4,869,319 + MPMX20_04649 0.16 -0.3 4,869,319 + MPMX20_04649 0.16 -0.3 4,869,327 - MPMX20_04649 0.17 -0.7 4,869,334 - MPMX20_04649 0.18 -0.7 4,869,351 + MPMX20_04649 0.19 -1.7 4,869,402 + MPMX20_04649 0.23 +1.3 4,869,405 - MPMX20_04649 0.24 -0.3 4,869,423 + MPMX20_04649 0.25 -1.1 4,869,439 - MPMX20_04649 0.27 +0.7 4,869,480 + MPMX20_04649 0.30 -0.5 4,869,482 + MPMX20_04649 0.30 +0.4 4,869,490 - MPMX20_04649 0.31 -1.2 4,869,509 - MPMX20_04649 0.32 -1.5 4,869,553 - MPMX20_04649 0.36 +0.1 4,869,575 + MPMX20_04649 0.38 -0.3 4,869,575 + MPMX20_04649 0.38 +0.1 4,869,575 + MPMX20_04649 0.38 -0.0 4,869,585 - MPMX20_04649 0.39 +1.3 4,869,630 + MPMX20_04649 0.43 -0.3 4,869,666 - MPMX20_04649 0.46 -2.1 4,869,671 - MPMX20_04649 0.46 -2.1 4,869,717 + MPMX20_04649 0.50 -1.8 4,869,717 + MPMX20_04649 0.50 +0.2 4,869,723 + MPMX20_04649 0.51 +3.3 4,869,725 - MPMX20_04649 0.51 +1.3 4,869,725 - MPMX20_04649 0.51 -0.1 4,869,750 + MPMX20_04649 0.53 -0.9 4,869,796 - MPMX20_04649 0.57 -0.5 4,869,818 + MPMX20_04649 0.59 -0.3 4,869,826 - MPMX20_04649 0.59 +0.8 4,869,895 + MPMX20_04649 0.65 -0.3 4,869,902 - MPMX20_04649 0.66 -1.3 4,870,016 + MPMX20_04649 0.76 -0.7 4,870,024 - MPMX20_04649 0.76 -1.9 4,870,026 + MPMX20_04649 0.76 +1.3 4,870,028 + MPMX20_04649 0.77 +0.2 4,870,033 + MPMX20_04649 0.77 +0.7 4,870,036 - MPMX20_04649 0.77 +0.3 4,870,041 - MPMX20_04649 0.78 -0.3 4,870,053 + MPMX20_04649 0.79 -0.3 4,870,054 - MPMX20_04649 0.79 +0.4 4,870,061 - MPMX20_04649 0.79 -0.9 4,870,084 + MPMX20_04649 0.81 +1.0 4,870,092 - MPMX20_04649 0.82 -0.5
Or see this region's nucleotide sequence