Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03855

Experiment: 0.1X LB plate, Mixed culture; Bacillus zanthoxyli TBS_056 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03854 and MPMX20_03855 are separated by 195 nucleotidesMPMX20_03855 and MPMX20_03856 are separated by 105 nucleotidesMPMX20_03856 and MPMX20_03857 are separated by 35 nucleotides MPMX20_03854: MPMX20_03854 - HTH-type transcriptional activator RhaS, at 4,058,094 to 4,058,993 _03854 MPMX20_03855: MPMX20_03855 - Alcohol dehydrogenase YqhD, at 4,059,189 to 4,060,352 _03855 MPMX20_03856: MPMX20_03856 - 2,5-diketo-D-gluconic acid reductase A, at 4,060,458 to 4,061,285 _03856 MPMX20_03857: MPMX20_03857 - hypothetical protein, at 4,061,321 to 4,063,492 _03857 Position (kb) 4059 4060 4061Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4058.228 kb on - strand, within MPMX20_03854at 4058.251 kb on + strand, within MPMX20_03854at 4058.259 kb on - strand, within MPMX20_03854at 4058.293 kb on + strand, within MPMX20_03854at 4058.298 kb on + strand, within MPMX20_03854at 4058.410 kb on + strand, within MPMX20_03854at 4058.437 kb on + strand, within MPMX20_03854at 4058.581 kb on + strand, within MPMX20_03854at 4058.591 kb on + strand, within MPMX20_03854at 4058.601 kb on - strand, within MPMX20_03854at 4058.607 kb on - strand, within MPMX20_03854at 4058.745 kb on + strand, within MPMX20_03854at 4058.793 kb on - strand, within MPMX20_03854at 4058.801 kb on + strand, within MPMX20_03854at 4058.892 kb on - strand, within MPMX20_03854at 4058.955 kb on - strandat 4058.974 kb on - strandat 4059.113 kb on - strandat 4059.113 kb on - strandat 4059.113 kb on - strandat 4059.128 kb on - strandat 4059.136 kb on - strandat 4059.183 kb on - strandat 4059.206 kb on + strandat 4059.263 kb on + strandat 4059.271 kb on - strandat 4059.271 kb on - strandat 4059.271 kb on - strandat 4059.335 kb on + strand, within MPMX20_03855at 4059.335 kb on + strand, within MPMX20_03855at 4059.335 kb on + strand, within MPMX20_03855at 4059.343 kb on - strand, within MPMX20_03855at 4059.343 kb on - strand, within MPMX20_03855at 4059.343 kb on - strand, within MPMX20_03855at 4059.343 kb on - strand, within MPMX20_03855at 4059.355 kb on + strand, within MPMX20_03855at 4059.363 kb on - strand, within MPMX20_03855at 4059.385 kb on + strand, within MPMX20_03855at 4059.393 kb on - strand, within MPMX20_03855at 4059.413 kb on - strand, within MPMX20_03855at 4059.485 kb on - strand, within MPMX20_03855at 4059.515 kb on - strand, within MPMX20_03855at 4059.525 kb on - strand, within MPMX20_03855at 4059.526 kb on + strand, within MPMX20_03855at 4059.526 kb on + strand, within MPMX20_03855at 4059.526 kb on + strand, within MPMX20_03855at 4059.526 kb on + strand, within MPMX20_03855at 4059.526 kb on + strand, within MPMX20_03855at 4059.526 kb on + strand, within MPMX20_03855at 4059.526 kb on + strand, within MPMX20_03855at 4059.526 kb on + strand, within MPMX20_03855at 4059.526 kb on + strand, within MPMX20_03855at 4059.526 kb on + strand, within MPMX20_03855at 4059.534 kb on - strand, within MPMX20_03855at 4059.534 kb on - strand, within MPMX20_03855at 4059.534 kb on - strand, within MPMX20_03855at 4059.534 kb on - strand, within MPMX20_03855at 4059.534 kb on - strand, within MPMX20_03855at 4059.534 kb on - strand, within MPMX20_03855at 4059.589 kb on + strand, within MPMX20_03855at 4059.624 kb on - strand, within MPMX20_03855at 4059.719 kb on + strand, within MPMX20_03855at 4059.727 kb on + strand, within MPMX20_03855at 4059.735 kb on - strand, within MPMX20_03855at 4059.735 kb on - strand, within MPMX20_03855at 4059.757 kb on - strand, within MPMX20_03855at 4059.784 kb on + strand, within MPMX20_03855at 4059.784 kb on + strand, within MPMX20_03855at 4059.784 kb on + strand, within MPMX20_03855at 4059.784 kb on + strand, within MPMX20_03855at 4059.792 kb on - strand, within MPMX20_03855at 4059.792 kb on - strand, within MPMX20_03855at 4059.879 kb on + strand, within MPMX20_03855at 4059.917 kb on + strand, within MPMX20_03855at 4059.923 kb on - strand, within MPMX20_03855at 4059.974 kb on + strand, within MPMX20_03855at 4059.974 kb on + strand, within MPMX20_03855at 4059.985 kb on + strand, within MPMX20_03855at 4059.985 kb on + strand, within MPMX20_03855at 4059.993 kb on - strand, within MPMX20_03855at 4060.049 kb on + strand, within MPMX20_03855at 4060.054 kb on + strand, within MPMX20_03855at 4060.129 kb on + strand, within MPMX20_03855at 4060.130 kb on + strand, within MPMX20_03855at 4060.138 kb on + strand, within MPMX20_03855at 4060.146 kb on - strand, within MPMX20_03855at 4060.195 kb on + strand, within MPMX20_03855at 4060.202 kb on - strand, within MPMX20_03855at 4060.202 kb on - strand, within MPMX20_03855at 4060.227 kb on + strand, within MPMX20_03855at 4060.230 kb on - strand, within MPMX20_03855at 4060.235 kb on - strand, within MPMX20_03855at 4060.404 kb on - strandat 4060.519 kb on - strandat 4060.521 kb on - strandat 4060.552 kb on - strand, within MPMX20_03856at 4060.640 kb on + strand, within MPMX20_03856at 4060.643 kb on - strand, within MPMX20_03856at 4060.645 kb on + strand, within MPMX20_03856at 4060.645 kb on + strand, within MPMX20_03856at 4060.645 kb on + strand, within MPMX20_03856at 4060.653 kb on - strand, within MPMX20_03856at 4060.678 kb on + strand, within MPMX20_03856at 4060.721 kb on - strand, within MPMX20_03856at 4060.740 kb on - strand, within MPMX20_03856at 4060.783 kb on - strand, within MPMX20_03856at 4060.788 kb on - strand, within MPMX20_03856at 4060.851 kb on + strand, within MPMX20_03856at 4061.017 kb on - strand, within MPMX20_03856at 4061.030 kb on + strand, within MPMX20_03856at 4061.032 kb on - strand, within MPMX20_03856at 4061.076 kb on + strand, within MPMX20_03856at 4061.131 kb on + strand, within MPMX20_03856at 4061.131 kb on - strand, within MPMX20_03856at 4061.237 kb on + strandat 4061.237 kb on + strandat 4061.237 kb on + strandat 4061.243 kb on + strandat 4061.245 kb on - strandat 4061.251 kb on - strandat 4061.251 kb on - strandat 4061.251 kb on - strandat 4061.257 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Bacillus zanthoxyli TBS_056 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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4,058,228 - MPMX20_03854 0.15 -0.3
4,058,251 + MPMX20_03854 0.17 -0.2
4,058,259 - MPMX20_03854 0.18 -0.8
4,058,293 + MPMX20_03854 0.22 -0.8
4,058,298 + MPMX20_03854 0.23 -2.1
4,058,410 + MPMX20_03854 0.35 +0.7
4,058,437 + MPMX20_03854 0.38 -0.9
4,058,581 + MPMX20_03854 0.54 -1.2
4,058,591 + MPMX20_03854 0.55 +0.7
4,058,601 - MPMX20_03854 0.56 +0.4
4,058,607 - MPMX20_03854 0.57 +0.2
4,058,745 + MPMX20_03854 0.72 -2.3
4,058,793 - MPMX20_03854 0.78 -2.1
4,058,801 + MPMX20_03854 0.79 -0.9
4,058,892 - MPMX20_03854 0.89 -0.9
4,058,955 - +2.0
4,058,974 - +0.2
4,059,113 - +2.2
4,059,113 - +0.1
4,059,113 - -1.0
4,059,128 - +2.2
4,059,136 - +0.1
4,059,183 - +0.2
4,059,206 + -2.4
4,059,263 + -0.3
4,059,271 - -0.3
4,059,271 - +0.4
4,059,271 - +0.7
4,059,335 + MPMX20_03855 0.13 -0.8
4,059,335 + MPMX20_03855 0.13 -0.5
4,059,335 + MPMX20_03855 0.13 +1.2
4,059,343 - MPMX20_03855 0.13 -1.5
4,059,343 - MPMX20_03855 0.13 -0.3
4,059,343 - MPMX20_03855 0.13 +0.2
4,059,343 - MPMX20_03855 0.13 +1.2
4,059,355 + MPMX20_03855 0.14 +0.2
4,059,363 - MPMX20_03855 0.15 -0.3
4,059,385 + MPMX20_03855 0.17 -1.1
4,059,393 - MPMX20_03855 0.18 -0.8
4,059,413 - MPMX20_03855 0.19 -1.2
4,059,485 - MPMX20_03855 0.25 -2.6
4,059,515 - MPMX20_03855 0.28 +0.8
4,059,525 - MPMX20_03855 0.29 +1.2
4,059,526 + MPMX20_03855 0.29 -1.0
4,059,526 + MPMX20_03855 0.29 +0.7
4,059,526 + MPMX20_03855 0.29 -3.0
4,059,526 + MPMX20_03855 0.29 +1.2
4,059,526 + MPMX20_03855 0.29 -0.3
4,059,526 + MPMX20_03855 0.29 -0.6
4,059,526 + MPMX20_03855 0.29 +1.8
4,059,526 + MPMX20_03855 0.29 -1.7
4,059,526 + MPMX20_03855 0.29 -0.8
4,059,526 + MPMX20_03855 0.29 +0.2
4,059,534 - MPMX20_03855 0.30 +1.5
4,059,534 - MPMX20_03855 0.30 -0.3
4,059,534 - MPMX20_03855 0.30 -0.3
4,059,534 - MPMX20_03855 0.30 -0.4
4,059,534 - MPMX20_03855 0.30 +0.2
4,059,534 - MPMX20_03855 0.30 -0.7
4,059,589 + MPMX20_03855 0.34 -0.4
4,059,624 - MPMX20_03855 0.37 -0.9
4,059,719 + MPMX20_03855 0.46 -0.7
4,059,727 + MPMX20_03855 0.46 -0.8
4,059,735 - MPMX20_03855 0.47 -0.8
4,059,735 - MPMX20_03855 0.47 -0.3
4,059,757 - MPMX20_03855 0.49 +0.1
4,059,784 + MPMX20_03855 0.51 -0.8
4,059,784 + MPMX20_03855 0.51 -1.4
4,059,784 + MPMX20_03855 0.51 +0.7
4,059,784 + MPMX20_03855 0.51 -0.6
4,059,792 - MPMX20_03855 0.52 +1.0
4,059,792 - MPMX20_03855 0.52 -2.2
4,059,879 + MPMX20_03855 0.59 -0.2
4,059,917 + MPMX20_03855 0.63 -1.9
4,059,923 - MPMX20_03855 0.63 -1.4
4,059,974 + MPMX20_03855 0.67 +0.9
4,059,974 + MPMX20_03855 0.67 -0.1
4,059,985 + MPMX20_03855 0.68 +0.7
4,059,985 + MPMX20_03855 0.68 -1.3
4,059,993 - MPMX20_03855 0.69 +2.2
4,060,049 + MPMX20_03855 0.74 -1.3
4,060,054 + MPMX20_03855 0.74 +2.2
4,060,129 + MPMX20_03855 0.81 +0.7
4,060,130 + MPMX20_03855 0.81 +0.2
4,060,138 + MPMX20_03855 0.82 -0.5
4,060,146 - MPMX20_03855 0.82 +1.2
4,060,195 + MPMX20_03855 0.86 +0.3
4,060,202 - MPMX20_03855 0.87 -0.8
4,060,202 - MPMX20_03855 0.87 -0.9
4,060,227 + MPMX20_03855 0.89 +0.7
4,060,230 - MPMX20_03855 0.89 -0.1
4,060,235 - MPMX20_03855 0.90 +0.2
4,060,404 - +1.6
4,060,519 - -0.9
4,060,521 - +2.2
4,060,552 - MPMX20_03856 0.11 -0.1
4,060,640 + MPMX20_03856 0.22 -1.1
4,060,643 - MPMX20_03856 0.22 -0.1
4,060,645 + MPMX20_03856 0.23 -1.6
4,060,645 + MPMX20_03856 0.23 -1.3
4,060,645 + MPMX20_03856 0.23 -1.0
4,060,653 - MPMX20_03856 0.24 -0.1
4,060,678 + MPMX20_03856 0.27 +0.9
4,060,721 - MPMX20_03856 0.32 -0.6
4,060,740 - MPMX20_03856 0.34 +2.2
4,060,783 - MPMX20_03856 0.39 -0.6
4,060,788 - MPMX20_03856 0.40 +4.0
4,060,851 + MPMX20_03856 0.47 +0.9
4,061,017 - MPMX20_03856 0.68 -0.8
4,061,030 + MPMX20_03856 0.69 -1.9
4,061,032 - MPMX20_03856 0.69 +1.2
4,061,076 + MPMX20_03856 0.75 +0.6
4,061,131 + MPMX20_03856 0.81 +1.7
4,061,131 - MPMX20_03856 0.81 -0.2
4,061,237 + -3.3
4,061,237 + -2.2
4,061,237 + -1.0
4,061,243 + +1.2
4,061,245 - -0.6
4,061,251 - +1.2
4,061,251 - +1.2
4,061,251 - -0.1
4,061,257 - +1.2

Or see this region's nucleotide sequence