Experiment: 0.1X LB plate, Mixed culture; Bacillus zanthoxyli TBS_056 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03854 and MPMX20_03855 are separated by 195 nucleotides MPMX20_03855 and MPMX20_03856 are separated by 105 nucleotides MPMX20_03856 and MPMX20_03857 are separated by 35 nucleotides
MPMX20_03854: MPMX20_03854 - HTH-type transcriptional activator RhaS, at 4,058,094 to 4,058,993
_03854
MPMX20_03855: MPMX20_03855 - Alcohol dehydrogenase YqhD, at 4,059,189 to 4,060,352
_03855
MPMX20_03856: MPMX20_03856 - 2,5-diketo-D-gluconic acid reductase A, at 4,060,458 to 4,061,285
_03856
MPMX20_03857: MPMX20_03857 - hypothetical protein, at 4,061,321 to 4,063,492
_03857
Position (kb)
4059
4060
4061 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 4058.228 kb on - strand, within MPMX20_03854 at 4058.251 kb on + strand, within MPMX20_03854 at 4058.259 kb on - strand, within MPMX20_03854 at 4058.293 kb on + strand, within MPMX20_03854 at 4058.298 kb on + strand, within MPMX20_03854 at 4058.410 kb on + strand, within MPMX20_03854 at 4058.437 kb on + strand, within MPMX20_03854 at 4058.581 kb on + strand, within MPMX20_03854 at 4058.591 kb on + strand, within MPMX20_03854 at 4058.601 kb on - strand, within MPMX20_03854 at 4058.607 kb on - strand, within MPMX20_03854 at 4058.745 kb on + strand, within MPMX20_03854 at 4058.793 kb on - strand, within MPMX20_03854 at 4058.801 kb on + strand, within MPMX20_03854 at 4058.892 kb on - strand, within MPMX20_03854 at 4058.955 kb on - strand at 4058.974 kb on - strand at 4059.113 kb on - strand at 4059.113 kb on - strand at 4059.113 kb on - strand at 4059.128 kb on - strand at 4059.136 kb on - strand at 4059.183 kb on - strand at 4059.206 kb on + strand at 4059.263 kb on + strand at 4059.271 kb on - strand at 4059.271 kb on - strand at 4059.271 kb on - strand at 4059.335 kb on + strand, within MPMX20_03855 at 4059.335 kb on + strand, within MPMX20_03855 at 4059.335 kb on + strand, within MPMX20_03855 at 4059.343 kb on - strand, within MPMX20_03855 at 4059.343 kb on - strand, within MPMX20_03855 at 4059.343 kb on - strand, within MPMX20_03855 at 4059.343 kb on - strand, within MPMX20_03855 at 4059.355 kb on + strand, within MPMX20_03855 at 4059.363 kb on - strand, within MPMX20_03855 at 4059.385 kb on + strand, within MPMX20_03855 at 4059.393 kb on - strand, within MPMX20_03855 at 4059.413 kb on - strand, within MPMX20_03855 at 4059.485 kb on - strand, within MPMX20_03855 at 4059.515 kb on - strand, within MPMX20_03855 at 4059.525 kb on - strand, within MPMX20_03855 at 4059.526 kb on + strand, within MPMX20_03855 at 4059.526 kb on + strand, within MPMX20_03855 at 4059.526 kb on + strand, within MPMX20_03855 at 4059.526 kb on + strand, within MPMX20_03855 at 4059.526 kb on + strand, within MPMX20_03855 at 4059.526 kb on + strand, within MPMX20_03855 at 4059.526 kb on + strand, within MPMX20_03855 at 4059.526 kb on + strand, within MPMX20_03855 at 4059.526 kb on + strand, within MPMX20_03855 at 4059.526 kb on + strand, within MPMX20_03855 at 4059.534 kb on - strand, within MPMX20_03855 at 4059.534 kb on - strand, within MPMX20_03855 at 4059.534 kb on - strand, within MPMX20_03855 at 4059.534 kb on - strand, within MPMX20_03855 at 4059.534 kb on - strand, within MPMX20_03855 at 4059.534 kb on - strand, within MPMX20_03855 at 4059.589 kb on + strand, within MPMX20_03855 at 4059.624 kb on - strand, within MPMX20_03855 at 4059.719 kb on + strand, within MPMX20_03855 at 4059.727 kb on + strand, within MPMX20_03855 at 4059.735 kb on - strand, within MPMX20_03855 at 4059.735 kb on - strand, within MPMX20_03855 at 4059.757 kb on - strand, within MPMX20_03855 at 4059.784 kb on + strand, within MPMX20_03855 at 4059.784 kb on + strand, within MPMX20_03855 at 4059.784 kb on + strand, within MPMX20_03855 at 4059.784 kb on + strand, within MPMX20_03855 at 4059.792 kb on - strand, within MPMX20_03855 at 4059.792 kb on - strand, within MPMX20_03855 at 4059.879 kb on + strand, within MPMX20_03855 at 4059.917 kb on + strand, within MPMX20_03855 at 4059.923 kb on - strand, within MPMX20_03855 at 4059.974 kb on + strand, within MPMX20_03855 at 4059.974 kb on + strand, within MPMX20_03855 at 4059.985 kb on + strand, within MPMX20_03855 at 4059.985 kb on + strand, within MPMX20_03855 at 4059.993 kb on - strand, within MPMX20_03855 at 4060.049 kb on + strand, within MPMX20_03855 at 4060.054 kb on + strand, within MPMX20_03855 at 4060.129 kb on + strand, within MPMX20_03855 at 4060.130 kb on + strand, within MPMX20_03855 at 4060.138 kb on + strand, within MPMX20_03855 at 4060.146 kb on - strand, within MPMX20_03855 at 4060.195 kb on + strand, within MPMX20_03855 at 4060.202 kb on - strand, within MPMX20_03855 at 4060.202 kb on - strand, within MPMX20_03855 at 4060.227 kb on + strand, within MPMX20_03855 at 4060.230 kb on - strand, within MPMX20_03855 at 4060.235 kb on - strand, within MPMX20_03855 at 4060.404 kb on - strand at 4060.519 kb on - strand at 4060.521 kb on - strand at 4060.552 kb on - strand, within MPMX20_03856 at 4060.640 kb on + strand, within MPMX20_03856 at 4060.643 kb on - strand, within MPMX20_03856 at 4060.645 kb on + strand, within MPMX20_03856 at 4060.645 kb on + strand, within MPMX20_03856 at 4060.645 kb on + strand, within MPMX20_03856 at 4060.653 kb on - strand, within MPMX20_03856 at 4060.678 kb on + strand, within MPMX20_03856 at 4060.721 kb on - strand, within MPMX20_03856 at 4060.740 kb on - strand, within MPMX20_03856 at 4060.783 kb on - strand, within MPMX20_03856 at 4060.788 kb on - strand, within MPMX20_03856 at 4060.851 kb on + strand, within MPMX20_03856 at 4061.017 kb on - strand, within MPMX20_03856 at 4061.030 kb on + strand, within MPMX20_03856 at 4061.032 kb on - strand, within MPMX20_03856 at 4061.076 kb on + strand, within MPMX20_03856 at 4061.131 kb on + strand, within MPMX20_03856 at 4061.131 kb on - strand, within MPMX20_03856 at 4061.237 kb on + strand at 4061.237 kb on + strand at 4061.237 kb on + strand at 4061.243 kb on + strand at 4061.245 kb on - strand at 4061.251 kb on - strand at 4061.251 kb on - strand at 4061.251 kb on - strand at 4061.257 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Bacillus zanthoxyli TBS_056 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 4,058,228 - MPMX20_03854 0.15 -0.3 4,058,251 + MPMX20_03854 0.17 -0.2 4,058,259 - MPMX20_03854 0.18 -0.8 4,058,293 + MPMX20_03854 0.22 -0.8 4,058,298 + MPMX20_03854 0.23 -2.1 4,058,410 + MPMX20_03854 0.35 +0.7 4,058,437 + MPMX20_03854 0.38 -0.9 4,058,581 + MPMX20_03854 0.54 -1.2 4,058,591 + MPMX20_03854 0.55 +0.7 4,058,601 - MPMX20_03854 0.56 +0.4 4,058,607 - MPMX20_03854 0.57 +0.2 4,058,745 + MPMX20_03854 0.72 -2.3 4,058,793 - MPMX20_03854 0.78 -2.1 4,058,801 + MPMX20_03854 0.79 -0.9 4,058,892 - MPMX20_03854 0.89 -0.9 4,058,955 - +2.0 4,058,974 - +0.2 4,059,113 - +2.2 4,059,113 - +0.1 4,059,113 - -1.0 4,059,128 - +2.2 4,059,136 - +0.1 4,059,183 - +0.2 4,059,206 + -2.4 4,059,263 + -0.3 4,059,271 - -0.3 4,059,271 - +0.4 4,059,271 - +0.7 4,059,335 + MPMX20_03855 0.13 -0.8 4,059,335 + MPMX20_03855 0.13 -0.5 4,059,335 + MPMX20_03855 0.13 +1.2 4,059,343 - MPMX20_03855 0.13 -1.5 4,059,343 - MPMX20_03855 0.13 -0.3 4,059,343 - MPMX20_03855 0.13 +0.2 4,059,343 - MPMX20_03855 0.13 +1.2 4,059,355 + MPMX20_03855 0.14 +0.2 4,059,363 - MPMX20_03855 0.15 -0.3 4,059,385 + MPMX20_03855 0.17 -1.1 4,059,393 - MPMX20_03855 0.18 -0.8 4,059,413 - MPMX20_03855 0.19 -1.2 4,059,485 - MPMX20_03855 0.25 -2.6 4,059,515 - MPMX20_03855 0.28 +0.8 4,059,525 - MPMX20_03855 0.29 +1.2 4,059,526 + MPMX20_03855 0.29 -1.0 4,059,526 + MPMX20_03855 0.29 +0.7 4,059,526 + MPMX20_03855 0.29 -3.0 4,059,526 + MPMX20_03855 0.29 +1.2 4,059,526 + MPMX20_03855 0.29 -0.3 4,059,526 + MPMX20_03855 0.29 -0.6 4,059,526 + MPMX20_03855 0.29 +1.8 4,059,526 + MPMX20_03855 0.29 -1.7 4,059,526 + MPMX20_03855 0.29 -0.8 4,059,526 + MPMX20_03855 0.29 +0.2 4,059,534 - MPMX20_03855 0.30 +1.5 4,059,534 - MPMX20_03855 0.30 -0.3 4,059,534 - MPMX20_03855 0.30 -0.3 4,059,534 - MPMX20_03855 0.30 -0.4 4,059,534 - MPMX20_03855 0.30 +0.2 4,059,534 - MPMX20_03855 0.30 -0.7 4,059,589 + MPMX20_03855 0.34 -0.4 4,059,624 - MPMX20_03855 0.37 -0.9 4,059,719 + MPMX20_03855 0.46 -0.7 4,059,727 + MPMX20_03855 0.46 -0.8 4,059,735 - MPMX20_03855 0.47 -0.8 4,059,735 - MPMX20_03855 0.47 -0.3 4,059,757 - MPMX20_03855 0.49 +0.1 4,059,784 + MPMX20_03855 0.51 -0.8 4,059,784 + MPMX20_03855 0.51 -1.4 4,059,784 + MPMX20_03855 0.51 +0.7 4,059,784 + MPMX20_03855 0.51 -0.6 4,059,792 - MPMX20_03855 0.52 +1.0 4,059,792 - MPMX20_03855 0.52 -2.2 4,059,879 + MPMX20_03855 0.59 -0.2 4,059,917 + MPMX20_03855 0.63 -1.9 4,059,923 - MPMX20_03855 0.63 -1.4 4,059,974 + MPMX20_03855 0.67 +0.9 4,059,974 + MPMX20_03855 0.67 -0.1 4,059,985 + MPMX20_03855 0.68 +0.7 4,059,985 + MPMX20_03855 0.68 -1.3 4,059,993 - MPMX20_03855 0.69 +2.2 4,060,049 + MPMX20_03855 0.74 -1.3 4,060,054 + MPMX20_03855 0.74 +2.2 4,060,129 + MPMX20_03855 0.81 +0.7 4,060,130 + MPMX20_03855 0.81 +0.2 4,060,138 + MPMX20_03855 0.82 -0.5 4,060,146 - MPMX20_03855 0.82 +1.2 4,060,195 + MPMX20_03855 0.86 +0.3 4,060,202 - MPMX20_03855 0.87 -0.8 4,060,202 - MPMX20_03855 0.87 -0.9 4,060,227 + MPMX20_03855 0.89 +0.7 4,060,230 - MPMX20_03855 0.89 -0.1 4,060,235 - MPMX20_03855 0.90 +0.2 4,060,404 - +1.6 4,060,519 - -0.9 4,060,521 - +2.2 4,060,552 - MPMX20_03856 0.11 -0.1 4,060,640 + MPMX20_03856 0.22 -1.1 4,060,643 - MPMX20_03856 0.22 -0.1 4,060,645 + MPMX20_03856 0.23 -1.6 4,060,645 + MPMX20_03856 0.23 -1.3 4,060,645 + MPMX20_03856 0.23 -1.0 4,060,653 - MPMX20_03856 0.24 -0.1 4,060,678 + MPMX20_03856 0.27 +0.9 4,060,721 - MPMX20_03856 0.32 -0.6 4,060,740 - MPMX20_03856 0.34 +2.2 4,060,783 - MPMX20_03856 0.39 -0.6 4,060,788 - MPMX20_03856 0.40 +4.0 4,060,851 + MPMX20_03856 0.47 +0.9 4,061,017 - MPMX20_03856 0.68 -0.8 4,061,030 + MPMX20_03856 0.69 -1.9 4,061,032 - MPMX20_03856 0.69 +1.2 4,061,076 + MPMX20_03856 0.75 +0.6 4,061,131 + MPMX20_03856 0.81 +1.7 4,061,131 - MPMX20_03856 0.81 -0.2 4,061,237 + -3.3 4,061,237 + -2.2 4,061,237 + -1.0 4,061,243 + +1.2 4,061,245 - -0.6 4,061,251 - +1.2 4,061,251 - +1.2 4,061,251 - -0.1 4,061,257 - +1.2
Or see this region's nucleotide sequence