Experiment: 0.1X LB plate, Mixed culture; Bacillus zanthoxyli TBS_056 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03415 and MPMX20_03416 overlap by 10 nucleotides MPMX20_03416 and MPMX20_03417 are separated by 125 nucleotides
MPMX20_03415: MPMX20_03415 - hypothetical protein, at 3,599,883 to 3,600,863
_03415
MPMX20_03416: MPMX20_03416 - hypothetical protein, at 3,600,854 to 3,601,492
_03416
MPMX20_03417: MPMX20_03417 - hypothetical protein, at 3,601,618 to 3,602,895
_03417
Position (kb)
3600
3601
3602 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6 at 3599.889 kb on - strand at 3599.891 kb on + strand at 3600.049 kb on + strand, within MPMX20_03415 at 3600.109 kb on + strand, within MPMX20_03415 at 3600.136 kb on + strand, within MPMX20_03415 at 3600.144 kb on - strand, within MPMX20_03415 at 3600.192 kb on - strand, within MPMX20_03415 at 3600.237 kb on + strand, within MPMX20_03415 at 3600.321 kb on - strand, within MPMX20_03415 at 3600.405 kb on + strand, within MPMX20_03415 at 3600.408 kb on - strand, within MPMX20_03415 at 3600.480 kb on - strand, within MPMX20_03415 at 3600.593 kb on + strand, within MPMX20_03415 at 3600.601 kb on - strand, within MPMX20_03415 at 3600.601 kb on - strand, within MPMX20_03415 at 3600.641 kb on + strand, within MPMX20_03415 at 3600.704 kb on - strand, within MPMX20_03415 at 3600.815 kb on + strand at 3600.889 kb on + strand at 3600.940 kb on + strand, within MPMX20_03416 at 3600.967 kb on + strand, within MPMX20_03416 at 3600.975 kb on - strand, within MPMX20_03416 at 3600.975 kb on - strand, within MPMX20_03416 at 3601.019 kb on + strand, within MPMX20_03416 at 3601.026 kb on + strand, within MPMX20_03416 at 3601.033 kb on + strand, within MPMX20_03416 at 3601.033 kb on + strand, within MPMX20_03416 at 3601.033 kb on + strand, within MPMX20_03416 at 3601.036 kb on - strand, within MPMX20_03416 at 3601.041 kb on - strand, within MPMX20_03416 at 3601.041 kb on - strand, within MPMX20_03416 at 3601.046 kb on - strand, within MPMX20_03416 at 3601.088 kb on + strand, within MPMX20_03416 at 3601.088 kb on + strand, within MPMX20_03416 at 3601.091 kb on - strand, within MPMX20_03416 at 3601.133 kb on + strand, within MPMX20_03416 at 3601.133 kb on + strand, within MPMX20_03416 at 3601.133 kb on + strand, within MPMX20_03416 at 3601.141 kb on - strand, within MPMX20_03416 at 3601.141 kb on - strand, within MPMX20_03416 at 3601.142 kb on + strand, within MPMX20_03416 at 3601.301 kb on + strand, within MPMX20_03416 at 3601.384 kb on + strand, within MPMX20_03416 at 3601.426 kb on - strand, within MPMX20_03416 at 3601.450 kb on - strand at 3601.475 kb on + strand at 3601.477 kb on + strand at 3601.483 kb on - strand at 3601.615 kb on - strand at 3601.617 kb on + strand at 3601.625 kb on - strand at 3601.727 kb on - strand at 3601.748 kb on + strand, within MPMX20_03417 at 3601.751 kb on + strand, within MPMX20_03417 at 3601.766 kb on + strand, within MPMX20_03417 at 3601.841 kb on + strand, within MPMX20_03417 at 3601.855 kb on + strand, within MPMX20_03417 at 3601.858 kb on - strand, within MPMX20_03417 at 3601.876 kb on - strand, within MPMX20_03417 at 3601.890 kb on + strand, within MPMX20_03417 at 3601.890 kb on + strand, within MPMX20_03417 at 3601.896 kb on + strand, within MPMX20_03417 at 3601.898 kb on - strand, within MPMX20_03417 at 3601.906 kb on - strand, within MPMX20_03417 at 3601.930 kb on + strand, within MPMX20_03417 at 3601.940 kb on - strand, within MPMX20_03417 at 3601.940 kb on - strand, within MPMX20_03417 at 3601.968 kb on + strand, within MPMX20_03417 at 3601.981 kb on + strand, within MPMX20_03417 at 3602.011 kb on + strand, within MPMX20_03417 at 3602.088 kb on + strand, within MPMX20_03417 at 3602.096 kb on - strand, within MPMX20_03417 at 3602.140 kb on - strand, within MPMX20_03417 at 3602.142 kb on + strand, within MPMX20_03417 at 3602.142 kb on + strand, within MPMX20_03417 at 3602.150 kb on - strand, within MPMX20_03417 at 3602.256 kb on + strand, within MPMX20_03417 at 3602.259 kb on + strand, within MPMX20_03417 at 3602.259 kb on + strand, within MPMX20_03417 at 3602.271 kb on + strand, within MPMX20_03417 at 3602.271 kb on + strand, within MPMX20_03417 at 3602.284 kb on - strand, within MPMX20_03417 at 3602.284 kb on - strand, within MPMX20_03417 at 3602.285 kb on - strand, within MPMX20_03417 at 3602.315 kb on - strand, within MPMX20_03417 at 3602.332 kb on - strand, within MPMX20_03417 at 3602.378 kb on + strand, within MPMX20_03417 at 3602.378 kb on - strand, within MPMX20_03417 at 3602.433 kb on - strand, within MPMX20_03417 at 3602.477 kb on + strand, within MPMX20_03417
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Bacillus zanthoxyli TBS_056 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 3,599,889 - +0.5 3,599,891 + -0.0 3,600,049 + MPMX20_03415 0.17 +1.9 3,600,109 + MPMX20_03415 0.23 +1.5 3,600,136 + MPMX20_03415 0.26 -0.5 3,600,144 - MPMX20_03415 0.27 -0.2 3,600,192 - MPMX20_03415 0.31 -0.1 3,600,237 + MPMX20_03415 0.36 +1.6 3,600,321 - MPMX20_03415 0.45 +0.1 3,600,405 + MPMX20_03415 0.53 -2.2 3,600,408 - MPMX20_03415 0.54 -0.5 3,600,480 - MPMX20_03415 0.61 -0.2 3,600,593 + MPMX20_03415 0.72 -0.1 3,600,601 - MPMX20_03415 0.73 -0.3 3,600,601 - MPMX20_03415 0.73 +0.4 3,600,641 + MPMX20_03415 0.77 -0.3 3,600,704 - MPMX20_03415 0.84 +1.1 3,600,815 + -1.0 3,600,889 + +0.8 3,600,940 + MPMX20_03416 0.13 +0.6 3,600,967 + MPMX20_03416 0.18 -0.0 3,600,975 - MPMX20_03416 0.19 +1.3 3,600,975 - MPMX20_03416 0.19 +0.3 3,601,019 + MPMX20_03416 0.26 -0.0 3,601,026 + MPMX20_03416 0.27 -0.0 3,601,033 + MPMX20_03416 0.28 +1.1 3,601,033 + MPMX20_03416 0.28 +0.3 3,601,033 + MPMX20_03416 0.28 +2.1 3,601,036 - MPMX20_03416 0.28 +6.1 3,601,041 - MPMX20_03416 0.29 -0.9 3,601,041 - MPMX20_03416 0.29 -1.4 3,601,046 - MPMX20_03416 0.30 -1.3 3,601,088 + MPMX20_03416 0.37 -0.5 3,601,088 + MPMX20_03416 0.37 -1.9 3,601,091 - MPMX20_03416 0.37 -0.0 3,601,133 + MPMX20_03416 0.44 -0.3 3,601,133 + MPMX20_03416 0.44 -0.5 3,601,133 + MPMX20_03416 0.44 +1.6 3,601,141 - MPMX20_03416 0.45 -0.4 3,601,141 - MPMX20_03416 0.45 -1.4 3,601,142 + MPMX20_03416 0.45 -0.2 3,601,301 + MPMX20_03416 0.70 +0.3 3,601,384 + MPMX20_03416 0.83 +0.6 3,601,426 - MPMX20_03416 0.90 -0.8 3,601,450 - -0.2 3,601,475 + -0.7 3,601,477 + +0.9 3,601,483 - -0.5 3,601,615 - +0.4 3,601,617 + +1.3 3,601,625 - -0.1 3,601,727 - +1.1 3,601,748 + MPMX20_03417 0.10 +1.1 3,601,751 + MPMX20_03417 0.10 +1.7 3,601,766 + MPMX20_03417 0.12 +0.3 3,601,841 + MPMX20_03417 0.17 +0.5 3,601,855 + MPMX20_03417 0.19 -1.5 3,601,858 - MPMX20_03417 0.19 -0.0 3,601,876 - MPMX20_03417 0.20 +0.7 3,601,890 + MPMX20_03417 0.21 +1.7 3,601,890 + MPMX20_03417 0.21 -0.0 3,601,896 + MPMX20_03417 0.22 -0.4 3,601,898 - MPMX20_03417 0.22 +1.7 3,601,906 - MPMX20_03417 0.23 -0.6 3,601,930 + MPMX20_03417 0.24 +0.1 3,601,940 - MPMX20_03417 0.25 +0.7 3,601,940 - MPMX20_03417 0.25 +0.6 3,601,968 + MPMX20_03417 0.27 -0.4 3,601,981 + MPMX20_03417 0.28 +1.2 3,602,011 + MPMX20_03417 0.31 +0.3 3,602,088 + MPMX20_03417 0.37 +0.2 3,602,096 - MPMX20_03417 0.37 -0.9 3,602,140 - MPMX20_03417 0.41 +0.3 3,602,142 + MPMX20_03417 0.41 +0.4 3,602,142 + MPMX20_03417 0.41 -0.5 3,602,150 - MPMX20_03417 0.42 -0.2 3,602,256 + MPMX20_03417 0.50 +2.9 3,602,259 + MPMX20_03417 0.50 +0.1 3,602,259 + MPMX20_03417 0.50 +0.7 3,602,271 + MPMX20_03417 0.51 +0.3 3,602,271 + MPMX20_03417 0.51 +0.1 3,602,284 - MPMX20_03417 0.52 -0.2 3,602,284 - MPMX20_03417 0.52 +1.6 3,602,285 - MPMX20_03417 0.52 +0.1 3,602,315 - MPMX20_03417 0.55 +0.5 3,602,332 - MPMX20_03417 0.56 -0.8 3,602,378 + MPMX20_03417 0.59 -1.6 3,602,378 - MPMX20_03417 0.59 +0.2 3,602,433 - MPMX20_03417 0.64 -0.0 3,602,477 + MPMX20_03417 0.67 -0.6
Or see this region's nucleotide sequence