Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03322

Experiment: 0.1X LB plate, Mixed culture; Bacillus zanthoxyli TBS_056 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03320 and MPMX20_03321 overlap by 14 nucleotidesMPMX20_03321 and MPMX20_03322 are separated by 212 nucleotidesMPMX20_03322 and MPMX20_03323 overlap by 1 nucleotidesMPMX20_03323 and MPMX20_03324 are separated by 18 nucleotides MPMX20_03320: MPMX20_03320 - Inner membrane protein YfeZ, at 3,488,555 to 3,489,004 _03320 MPMX20_03321: MPMX20_03321 - Acetyltransferase YpeA, at 3,488,991 to 3,489,416 _03321 MPMX20_03322: MPMX20_03322 - N-acetylmuramoyl-L-alanine amidase AmiA, at 3,489,629 to 3,490,504 _03322 MPMX20_03323: MPMX20_03323 - Oxygen-dependent coproporphyrinogen-III oxidase, at 3,490,504 to 3,491,403 _03323 MPMX20_03324: MPMX20_03324 - NADP-dependent malic enzyme, at 3,491,422 to 3,493,701 _03324 Position (kb) 3489 3490 3491Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3488.662 kb on + strand, within MPMX20_03320at 3488.678 kb on + strand, within MPMX20_03320at 3488.678 kb on - strand, within MPMX20_03320at 3488.739 kb on + strand, within MPMX20_03320at 3488.846 kb on - strand, within MPMX20_03320at 3488.846 kb on - strand, within MPMX20_03320at 3488.867 kb on - strand, within MPMX20_03320at 3488.906 kb on + strand, within MPMX20_03320at 3488.926 kb on + strand, within MPMX20_03320at 3488.995 kb on - strandat 3489.027 kb on + strandat 3489.035 kb on - strand, within MPMX20_03321at 3489.051 kb on + strand, within MPMX20_03321at 3489.059 kb on - strand, within MPMX20_03321at 3489.255 kb on - strand, within MPMX20_03321at 3489.362 kb on + strand, within MPMX20_03321at 3489.362 kb on + strand, within MPMX20_03321at 3489.362 kb on + strand, within MPMX20_03321at 3489.362 kb on + strand, within MPMX20_03321at 3489.370 kb on - strand, within MPMX20_03321at 3489.370 kb on - strand, within MPMX20_03321at 3489.378 kb on - strandat 3489.378 kb on - strandat 3489.575 kb on - strandat 3489.590 kb on + strandat 3489.644 kb on - strandat 3489.695 kb on + strandat 3489.732 kb on - strand, within MPMX20_03322at 3489.802 kb on + strand, within MPMX20_03322at 3489.802 kb on + strand, within MPMX20_03322at 3489.810 kb on - strand, within MPMX20_03322at 3489.816 kb on - strand, within MPMX20_03322at 3489.892 kb on - strand, within MPMX20_03322at 3489.971 kb on - strand, within MPMX20_03322at 3489.996 kb on + strand, within MPMX20_03322at 3490.008 kb on + strand, within MPMX20_03322at 3490.075 kb on - strand, within MPMX20_03322at 3490.084 kb on + strand, within MPMX20_03322at 3490.092 kb on - strand, within MPMX20_03322at 3490.213 kb on - strand, within MPMX20_03322at 3490.236 kb on + strand, within MPMX20_03322at 3490.275 kb on - strand, within MPMX20_03322at 3490.332 kb on - strand, within MPMX20_03322at 3490.405 kb on - strand, within MPMX20_03322at 3490.445 kb on + strandat 3490.509 kb on + strandat 3490.580 kb on - strandat 3490.650 kb on + strand, within MPMX20_03323at 3490.741 kb on + strand, within MPMX20_03323at 3490.758 kb on - strand, within MPMX20_03323at 3490.807 kb on - strand, within MPMX20_03323at 3490.851 kb on + strand, within MPMX20_03323at 3490.856 kb on + strand, within MPMX20_03323at 3490.904 kb on + strand, within MPMX20_03323at 3491.110 kb on - strand, within MPMX20_03323at 3491.120 kb on + strand, within MPMX20_03323at 3491.125 kb on + strand, within MPMX20_03323at 3491.139 kb on - strand, within MPMX20_03323at 3491.174 kb on + strand, within MPMX20_03323at 3491.245 kb on - strand, within MPMX20_03323at 3491.334 kb on - strandat 3491.344 kb on + strandat 3491.355 kb on + strandat 3491.394 kb on - strandat 3491.398 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Bacillus zanthoxyli TBS_056 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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3,488,662 + MPMX20_03320 0.24 +0.0
3,488,678 + MPMX20_03320 0.27 +1.2
3,488,678 - MPMX20_03320 0.27 +0.8
3,488,739 + MPMX20_03320 0.41 +1.4
3,488,846 - MPMX20_03320 0.65 +0.5
3,488,846 - MPMX20_03320 0.65 -0.3
3,488,867 - MPMX20_03320 0.69 -2.8
3,488,906 + MPMX20_03320 0.78 -0.8
3,488,926 + MPMX20_03320 0.82 -1.3
3,488,995 - +0.3
3,489,027 + +0.2
3,489,035 - MPMX20_03321 0.10 -1.2
3,489,051 + MPMX20_03321 0.14 -0.1
3,489,059 - MPMX20_03321 0.16 +1.2
3,489,255 - MPMX20_03321 0.62 +1.4
3,489,362 + MPMX20_03321 0.87 -0.3
3,489,362 + MPMX20_03321 0.87 +0.2
3,489,362 + MPMX20_03321 0.87 +2.4
3,489,362 + MPMX20_03321 0.87 +0.8
3,489,370 - MPMX20_03321 0.89 +1.0
3,489,370 - MPMX20_03321 0.89 -2.2
3,489,378 - -1.4
3,489,378 - -1.5
3,489,575 - +1.1
3,489,590 + -0.3
3,489,644 - +0.7
3,489,695 + +2.8
3,489,732 - MPMX20_03322 0.12 -0.8
3,489,802 + MPMX20_03322 0.20 +0.4
3,489,802 + MPMX20_03322 0.20 -0.1
3,489,810 - MPMX20_03322 0.21 +0.8
3,489,816 - MPMX20_03322 0.21 +3.1
3,489,892 - MPMX20_03322 0.30 -0.5
3,489,971 - MPMX20_03322 0.39 +0.3
3,489,996 + MPMX20_03322 0.42 +2.4
3,490,008 + MPMX20_03322 0.43 -0.1
3,490,075 - MPMX20_03322 0.51 +0.6
3,490,084 + MPMX20_03322 0.52 +0.4
3,490,092 - MPMX20_03322 0.53 +0.8
3,490,213 - MPMX20_03322 0.67 -1.4
3,490,236 + MPMX20_03322 0.69 +2.4
3,490,275 - MPMX20_03322 0.74 +1.1
3,490,332 - MPMX20_03322 0.80 -1.2
3,490,405 - MPMX20_03322 0.89 +0.7
3,490,445 + +0.0
3,490,509 + -1.2
3,490,580 - +0.1
3,490,650 + MPMX20_03323 0.16 +1.8
3,490,741 + MPMX20_03323 0.26 -0.9
3,490,758 - MPMX20_03323 0.28 +0.1
3,490,807 - MPMX20_03323 0.34 +1.2
3,490,851 + MPMX20_03323 0.39 +0.1
3,490,856 + MPMX20_03323 0.39 +0.1
3,490,904 + MPMX20_03323 0.44 +0.8
3,491,110 - MPMX20_03323 0.67 +0.1
3,491,120 + MPMX20_03323 0.68 -0.6
3,491,125 + MPMX20_03323 0.69 -0.3
3,491,139 - MPMX20_03323 0.71 -0.3
3,491,174 + MPMX20_03323 0.74 -0.2
3,491,245 - MPMX20_03323 0.82 -0.4
3,491,334 - +2.4
3,491,344 + +0.3
3,491,355 + -1.2
3,491,394 - -0.8
3,491,398 + +2.4

Or see this region's nucleotide sequence