Experiment: 0.1X LB plate, Mixed culture; Bacillus zanthoxyli TBS_056 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03241 and MPMX20_03242 are separated by 8 nucleotides MPMX20_03242 and MPMX20_03243 overlap by 4 nucleotides MPMX20_03243 and MPMX20_03244 are separated by 88 nucleotides
MPMX20_03241: MPMX20_03241 - Histidine transport ATP-binding protein HisP, at 3,411,738 to 3,412,511
_03241
MPMX20_03242: MPMX20_03242 - Histidine transport system permease protein HisM, at 3,412,520 to 3,413,236
_03242
MPMX20_03243: MPMX20_03243 - Histidine transport system permease protein HisQ, at 3,413,233 to 3,413,919
_03243
MPMX20_03244: MPMX20_03244 - Histidine-binding periplasmic protein, at 3,414,008 to 3,414,790
_03244
Position (kb)
3413
3414 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6
7 at 3412.270 kb on + strand, within MPMX20_03241 at 3412.355 kb on + strand, within MPMX20_03241 at 3412.355 kb on + strand, within MPMX20_03241 at 3412.355 kb on + strand, within MPMX20_03241 at 3412.363 kb on - strand, within MPMX20_03241 at 3412.363 kb on - strand, within MPMX20_03241 at 3412.363 kb on - strand, within MPMX20_03241 at 3412.363 kb on - strand, within MPMX20_03241 at 3412.363 kb on - strand, within MPMX20_03241 at 3412.363 kb on - strand, within MPMX20_03241 at 3412.363 kb on - strand, within MPMX20_03241 at 3412.370 kb on + strand, within MPMX20_03241 at 3412.385 kb on - strand, within MPMX20_03241 at 3412.387 kb on - strand, within MPMX20_03241 at 3412.481 kb on + strand at 3412.490 kb on + strand at 3412.556 kb on + strand at 3412.591 kb on - strand at 3412.591 kb on - strand at 3412.650 kb on - strand, within MPMX20_03242 at 3412.693 kb on - strand, within MPMX20_03242 at 3412.706 kb on + strand, within MPMX20_03242 at 3412.709 kb on - strand, within MPMX20_03242 at 3412.714 kb on - strand, within MPMX20_03242 at 3412.714 kb on - strand, within MPMX20_03242 at 3412.724 kb on - strand, within MPMX20_03242 at 3412.802 kb on - strand, within MPMX20_03242 at 3412.855 kb on - strand, within MPMX20_03242 at 3412.918 kb on + strand, within MPMX20_03242 at 3412.918 kb on + strand, within MPMX20_03242 at 3412.928 kb on + strand, within MPMX20_03242 at 3412.928 kb on + strand, within MPMX20_03242 at 3412.928 kb on + strand, within MPMX20_03242 at 3412.928 kb on + strand, within MPMX20_03242 at 3412.931 kb on - strand, within MPMX20_03242 at 3412.936 kb on - strand, within MPMX20_03242 at 3412.936 kb on - strand, within MPMX20_03242 at 3412.936 kb on - strand, within MPMX20_03242 at 3413.001 kb on - strand, within MPMX20_03242 at 3413.001 kb on - strand, within MPMX20_03242 at 3413.042 kb on + strand, within MPMX20_03242 at 3413.193 kb on + strand at 3413.193 kb on + strand at 3413.196 kb on - strand at 3413.244 kb on - strand at 3413.248 kb on + strand at 3413.248 kb on + strand at 3413.248 kb on + strand at 3413.248 kb on + strand at 3413.251 kb on - strand at 3413.256 kb on - strand at 3413.278 kb on - strand at 3413.337 kb on + strand, within MPMX20_03243 at 3413.345 kb on - strand, within MPMX20_03243 at 3413.352 kb on + strand, within MPMX20_03243 at 3413.352 kb on + strand, within MPMX20_03243 at 3413.397 kb on + strand, within MPMX20_03243 at 3413.457 kb on - strand, within MPMX20_03243 at 3413.477 kb on - strand, within MPMX20_03243 at 3413.511 kb on + strand, within MPMX20_03243 at 3413.511 kb on + strand, within MPMX20_03243 at 3413.519 kb on - strand, within MPMX20_03243 at 3413.567 kb on + strand, within MPMX20_03243 at 3413.575 kb on - strand, within MPMX20_03243 at 3413.633 kb on - strand, within MPMX20_03243 at 3413.697 kb on - strand, within MPMX20_03243 at 3413.702 kb on - strand, within MPMX20_03243 at 3413.798 kb on + strand, within MPMX20_03243 at 3413.798 kb on + strand, within MPMX20_03243 at 3413.829 kb on - strand, within MPMX20_03243 at 3413.854 kb on + strand at 3413.865 kb on + strand at 3413.865 kb on + strand at 3413.865 kb on + strand at 3413.924 kb on - strand at 3413.955 kb on - strand at 3414.092 kb on + strand, within MPMX20_03244 at 3414.105 kb on - strand, within MPMX20_03244 at 3414.138 kb on - strand, within MPMX20_03244 at 3414.138 kb on - strand, within MPMX20_03244 at 3414.138 kb on - strand, within MPMX20_03244 at 3414.138 kb on - strand, within MPMX20_03244 at 3414.219 kb on - strand, within MPMX20_03244 at 3414.245 kb on - strand, within MPMX20_03244 at 3414.278 kb on - strand, within MPMX20_03244 at 3414.356 kb on + strand, within MPMX20_03244 at 3414.368 kb on + strand, within MPMX20_03244 at 3414.412 kb on - strand, within MPMX20_03244 at 3414.429 kb on + strand, within MPMX20_03244 at 3414.440 kb on + strand, within MPMX20_03244 at 3414.448 kb on - strand, within MPMX20_03244 at 3414.585 kb on + strand, within MPMX20_03244 at 3414.619 kb on - strand, within MPMX20_03244 at 3414.631 kb on - strand, within MPMX20_03244 at 3414.687 kb on - strand, within MPMX20_03244 at 3414.691 kb on + strand, within MPMX20_03244 at 3414.699 kb on - strand, within MPMX20_03244 at 3414.699 kb on - strand, within MPMX20_03244 at 3414.832 kb on + strand at 3414.842 kb on + strand at 3414.842 kb on + strand at 3414.850 kb on - strand at 3414.862 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Bacillus zanthoxyli TBS_056 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 3,412,270 + MPMX20_03241 0.69 +0.4 3,412,355 + MPMX20_03241 0.80 -0.6 3,412,355 + MPMX20_03241 0.80 -0.2 3,412,355 + MPMX20_03241 0.80 -0.7 3,412,363 - MPMX20_03241 0.81 -2.6 3,412,363 - MPMX20_03241 0.81 -1.3 3,412,363 - MPMX20_03241 0.81 +7.0 3,412,363 - MPMX20_03241 0.81 -2.9 3,412,363 - MPMX20_03241 0.81 +0.1 3,412,363 - MPMX20_03241 0.81 -0.8 3,412,363 - MPMX20_03241 0.81 -1.0 3,412,370 + MPMX20_03241 0.82 -1.1 3,412,385 - MPMX20_03241 0.84 -1.3 3,412,387 - MPMX20_03241 0.84 -0.8 3,412,481 + +0.0 3,412,490 + +0.0 3,412,556 + -1.5 3,412,591 - -0.3 3,412,591 - -1.4 3,412,650 - MPMX20_03242 0.18 -0.9 3,412,693 - MPMX20_03242 0.24 -0.1 3,412,706 + MPMX20_03242 0.26 -0.7 3,412,709 - MPMX20_03242 0.26 -1.0 3,412,714 - MPMX20_03242 0.27 -0.5 3,412,714 - MPMX20_03242 0.27 -0.2 3,412,724 - MPMX20_03242 0.28 +1.4 3,412,802 - MPMX20_03242 0.39 -0.2 3,412,855 - MPMX20_03242 0.47 -1.2 3,412,918 + MPMX20_03242 0.56 -0.0 3,412,918 + MPMX20_03242 0.56 -0.2 3,412,928 + MPMX20_03242 0.57 -2.1 3,412,928 + MPMX20_03242 0.57 -0.5 3,412,928 + MPMX20_03242 0.57 -0.2 3,412,928 + MPMX20_03242 0.57 -0.6 3,412,931 - MPMX20_03242 0.57 +0.1 3,412,936 - MPMX20_03242 0.58 -0.7 3,412,936 - MPMX20_03242 0.58 -0.9 3,412,936 - MPMX20_03242 0.58 -0.5 3,413,001 - MPMX20_03242 0.67 -3.2 3,413,001 - MPMX20_03242 0.67 -0.2 3,413,042 + MPMX20_03242 0.73 -1.4 3,413,193 + -2.0 3,413,193 + +1.2 3,413,196 - +0.4 3,413,244 - +0.2 3,413,248 + +0.4 3,413,248 + -1.8 3,413,248 + -1.2 3,413,248 + -1.0 3,413,251 - -1.5 3,413,256 - -0.7 3,413,278 - +0.4 3,413,337 + MPMX20_03243 0.15 -2.8 3,413,345 - MPMX20_03243 0.16 -1.1 3,413,352 + MPMX20_03243 0.17 -0.7 3,413,352 + MPMX20_03243 0.17 -1.2 3,413,397 + MPMX20_03243 0.24 +0.4 3,413,457 - MPMX20_03243 0.33 +0.0 3,413,477 - MPMX20_03243 0.36 +0.8 3,413,511 + MPMX20_03243 0.40 -1.2 3,413,511 + MPMX20_03243 0.40 -0.3 3,413,519 - MPMX20_03243 0.42 +0.3 3,413,567 + MPMX20_03243 0.49 +0.2 3,413,575 - MPMX20_03243 0.50 -1.5 3,413,633 - MPMX20_03243 0.58 -1.0 3,413,697 - MPMX20_03243 0.68 -0.7 3,413,702 - MPMX20_03243 0.68 +2.4 3,413,798 + MPMX20_03243 0.82 +0.4 3,413,798 + MPMX20_03243 0.82 -0.0 3,413,829 - MPMX20_03243 0.87 -0.7 3,413,854 + -0.5 3,413,865 + -2.4 3,413,865 + +0.4 3,413,865 + -1.6 3,413,924 - -0.6 3,413,955 - -0.8 3,414,092 + MPMX20_03244 0.11 +0.6 3,414,105 - MPMX20_03244 0.12 +2.4 3,414,138 - MPMX20_03244 0.17 -0.9 3,414,138 - MPMX20_03244 0.17 -0.4 3,414,138 - MPMX20_03244 0.17 -0.6 3,414,138 - MPMX20_03244 0.17 -0.8 3,414,219 - MPMX20_03244 0.27 -1.4 3,414,245 - MPMX20_03244 0.30 -2.8 3,414,278 - MPMX20_03244 0.34 +0.7 3,414,356 + MPMX20_03244 0.44 -1.6 3,414,368 + MPMX20_03244 0.46 +0.4 3,414,412 - MPMX20_03244 0.52 -1.0 3,414,429 + MPMX20_03244 0.54 +1.4 3,414,440 + MPMX20_03244 0.55 -0.2 3,414,448 - MPMX20_03244 0.56 -1.9 3,414,585 + MPMX20_03244 0.74 -2.2 3,414,619 - MPMX20_03244 0.78 +0.0 3,414,631 - MPMX20_03244 0.80 -1.2 3,414,687 - MPMX20_03244 0.87 -3.0 3,414,691 + MPMX20_03244 0.87 +0.2 3,414,699 - MPMX20_03244 0.88 -1.5 3,414,699 - MPMX20_03244 0.88 -1.5 3,414,832 + -0.5 3,414,842 + -1.0 3,414,842 + -2.0 3,414,850 - -0.5 3,414,862 - +0.5
Or see this region's nucleotide sequence