Experiment: 0.1X LB plate, Mixed culture; Bacillus zanthoxyli TBS_056 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00012 and MPMX20_00013 are separated by 51 nucleotides MPMX20_00013 and MPMX20_00014 are separated by 10 nucleotides MPMX20_00014 and MPMX20_00015 are separated by 317 nucleotides
MPMX20_00012: MPMX20_00012 - D-galactonate transporter, at 12,861 to 14,153
_00012
MPMX20_00013: MPMX20_00013 - hypothetical protein, at 14,205 to 15,434
_00013
MPMX20_00014: MPMX20_00014 - hypothetical protein, at 15,445 to 15,759
_00014
MPMX20_00015: MPMX20_00015 - Small heat shock protein IbpA, at 16,077 to 16,487
_00015
Position (kb) 14
15
16 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7 at 13.223 kb on - strand, within MPMX20_00012 at 13.289 kb on - strand, within MPMX20_00012 at 13.295 kb on - strand, within MPMX20_00012 at 13.297 kb on - strand, within MPMX20_00012 at 13.305 kb on - strand, within MPMX20_00012 at 13.305 kb on - strand, within MPMX20_00012 at 13.348 kb on - strand, within MPMX20_00012 at 13.356 kb on + strand, within MPMX20_00012 at 13.364 kb on - strand, within MPMX20_00012 at 13.364 kb on - strand, within MPMX20_00012 at 13.428 kb on - strand, within MPMX20_00012 at 13.428 kb on - strand, within MPMX20_00012 at 13.502 kb on + strand, within MPMX20_00012 at 13.547 kb on + strand, within MPMX20_00012 at 13.547 kb on + strand, within MPMX20_00012 at 13.547 kb on + strand, within MPMX20_00012 at 13.555 kb on - strand, within MPMX20_00012 at 13.599 kb on - strand, within MPMX20_00012 at 13.607 kb on + strand, within MPMX20_00012 at 13.618 kb on + strand, within MPMX20_00012 at 13.618 kb on + strand, within MPMX20_00012 at 13.618 kb on + strand, within MPMX20_00012 at 13.624 kb on - strand, within MPMX20_00012 at 13.626 kb on - strand, within MPMX20_00012 at 13.626 kb on - strand, within MPMX20_00012 at 13.675 kb on - strand, within MPMX20_00012 at 13.729 kb on + strand, within MPMX20_00012 at 13.735 kb on - strand, within MPMX20_00012 at 13.829 kb on + strand, within MPMX20_00012 at 13.948 kb on + strand, within MPMX20_00012 at 13.974 kb on - strand, within MPMX20_00012 at 13.984 kb on - strand, within MPMX20_00012 at 13.988 kb on + strand, within MPMX20_00012 at 14.017 kb on - strand, within MPMX20_00012 at 14.038 kb on - strand at 14.046 kb on + strand at 14.051 kb on + strand at 14.054 kb on - strand at 14.058 kb on + strand at 14.094 kb on + strand at 14.111 kb on + strand at 14.113 kb on + strand at 14.113 kb on + strand at 14.113 kb on + strand at 14.121 kb on - strand at 14.142 kb on + strand at 14.148 kb on + strand at 14.156 kb on - strand at 14.156 kb on - strand at 14.156 kb on - strand at 14.156 kb on - strand at 14.156 kb on - strand at 14.165 kb on + strand at 14.165 kb on + strand at 14.165 kb on + strand at 14.178 kb on - strand at 14.195 kb on + strand at 14.195 kb on + strand at 14.198 kb on - strand at 14.238 kb on - strand at 14.280 kb on - strand at 14.336 kb on + strand, within MPMX20_00013 at 14.357 kb on + strand, within MPMX20_00013 at 14.423 kb on + strand, within MPMX20_00013 at 14.431 kb on - strand, within MPMX20_00013 at 14.502 kb on + strand, within MPMX20_00013 at 14.503 kb on - strand, within MPMX20_00013 at 14.510 kb on - strand, within MPMX20_00013 at 14.510 kb on - strand, within MPMX20_00013 at 14.510 kb on - strand, within MPMX20_00013 at 14.522 kb on - strand, within MPMX20_00013 at 14.527 kb on + strand, within MPMX20_00013 at 14.535 kb on - strand, within MPMX20_00013 at 14.560 kb on - strand, within MPMX20_00013 at 14.560 kb on - strand, within MPMX20_00013 at 14.623 kb on + strand, within MPMX20_00013 at 14.646 kb on - strand, within MPMX20_00013 at 14.722 kb on + strand, within MPMX20_00013 at 14.750 kb on + strand, within MPMX20_00013 at 14.782 kb on - strand, within MPMX20_00013 at 14.838 kb on + strand, within MPMX20_00013 at 14.926 kb on - strand, within MPMX20_00013 at 14.971 kb on - strand, within MPMX20_00013 at 14.981 kb on - strand, within MPMX20_00013 at 15.022 kb on + strand, within MPMX20_00013 at 15.051 kb on - strand, within MPMX20_00013 at 15.053 kb on + strand, within MPMX20_00013 at 15.086 kb on + strand, within MPMX20_00013 at 15.123 kb on + strand, within MPMX20_00013 at 15.140 kb on + strand, within MPMX20_00013 at 15.140 kb on + strand, within MPMX20_00013 at 15.145 kb on + strand, within MPMX20_00013 at 15.148 kb on - strand, within MPMX20_00013 at 15.162 kb on - strand, within MPMX20_00013 at 15.208 kb on - strand, within MPMX20_00013 at 15.218 kb on - strand, within MPMX20_00013 at 15.428 kb on + strand at 15.428 kb on + strand at 15.428 kb on + strand at 15.436 kb on - strand at 15.450 kb on - strand at 15.515 kb on + strand, within MPMX20_00014 at 15.559 kb on + strand, within MPMX20_00014 at 15.566 kb on + strand, within MPMX20_00014 at 15.566 kb on + strand, within MPMX20_00014 at 15.574 kb on - strand, within MPMX20_00014 at 15.580 kb on + strand, within MPMX20_00014 at 15.657 kb on + strand, within MPMX20_00014 at 15.693 kb on + strand, within MPMX20_00014 at 15.730 kb on - strand at 15.787 kb on + strand at 15.787 kb on + strand at 15.795 kb on - strand at 15.795 kb on - strand at 15.795 kb on - strand at 15.795 kb on - strand at 15.805 kb on + strand at 15.805 kb on + strand at 15.805 kb on + strand at 15.805 kb on + strand at 15.805 kb on + strand at 15.813 kb on - strand at 15.813 kb on - strand at 15.813 kb on - strand at 15.844 kb on + strand at 15.844 kb on + strand at 15.852 kb on - strand at 15.955 kb on + strand at 15.997 kb on + strand at 16.003 kb on - strand at 16.005 kb on - strand at 16.007 kb on + strand at 16.015 kb on - strand at 16.017 kb on + strand at 16.022 kb on + strand at 16.022 kb on + strand at 16.067 kb on + strand at 16.067 kb on + strand at 16.141 kb on - strand, within MPMX20_00015 at 16.169 kb on + strand, within MPMX20_00015 at 16.177 kb on - strand, within MPMX20_00015 at 16.179 kb on + strand, within MPMX20_00015 at 16.184 kb on - strand, within MPMX20_00015 at 16.184 kb on - strand, within MPMX20_00015 at 16.184 kb on - strand, within MPMX20_00015 at 16.186 kb on + strand, within MPMX20_00015 at 16.194 kb on - strand, within MPMX20_00015 at 16.216 kb on - strand, within MPMX20_00015 at 16.286 kb on + strand, within MPMX20_00015 at 16.294 kb on - strand, within MPMX20_00015 at 16.298 kb on + strand, within MPMX20_00015 at 16.337 kb on + strand, within MPMX20_00015 at 16.347 kb on - strand, within MPMX20_00015 at 16.385 kb on - strand, within MPMX20_00015 at 16.407 kb on - strand, within MPMX20_00015 at 16.407 kb on - strand, within MPMX20_00015 at 16.417 kb on + strand, within MPMX20_00015
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Bacillus zanthoxyli TBS_056 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 13,223 - MPMX20_00012 0.28 -1.0 13,289 - MPMX20_00012 0.33 -0.1 13,295 - MPMX20_00012 0.34 +0.5 13,297 - MPMX20_00012 0.34 +1.0 13,305 - MPMX20_00012 0.34 -1.0 13,305 - MPMX20_00012 0.34 +0.7 13,348 - MPMX20_00012 0.38 -0.2 13,356 + MPMX20_00012 0.38 -0.2 13,364 - MPMX20_00012 0.39 +2.2 13,364 - MPMX20_00012 0.39 -0.9 13,428 - MPMX20_00012 0.44 -1.3 13,428 - MPMX20_00012 0.44 -1.4 13,502 + MPMX20_00012 0.50 -0.4 13,547 + MPMX20_00012 0.53 -1.3 13,547 + MPMX20_00012 0.53 +7.3 13,547 + MPMX20_00012 0.53 +0.8 13,555 - MPMX20_00012 0.54 -1.2 13,599 - MPMX20_00012 0.57 -1.4 13,607 + MPMX20_00012 0.58 +1.9 13,618 + MPMX20_00012 0.59 -1.1 13,618 + MPMX20_00012 0.59 -0.4 13,618 + MPMX20_00012 0.59 +0.6 13,624 - MPMX20_00012 0.59 +0.2 13,626 - MPMX20_00012 0.59 -0.9 13,626 - MPMX20_00012 0.59 +0.6 13,675 - MPMX20_00012 0.63 -1.6 13,729 + MPMX20_00012 0.67 -0.1 13,735 - MPMX20_00012 0.68 +0.5 13,829 + MPMX20_00012 0.75 -1.5 13,948 + MPMX20_00012 0.84 -1.5 13,974 - MPMX20_00012 0.86 +0.1 13,984 - MPMX20_00012 0.87 -0.8 13,988 + MPMX20_00012 0.87 +0.3 14,017 - MPMX20_00012 0.89 +1.2 14,038 - -2.7 14,046 + -1.5 14,051 + -1.4 14,054 - +0.2 14,058 + +2.2 14,094 + +0.1 14,111 + -1.0 14,113 + -0.5 14,113 + -2.2 14,113 + +0.5 14,121 - -0.2 14,142 + +0.7 14,148 + +0.6 14,156 - -1.9 14,156 - +1.3 14,156 - +1.2 14,156 - -0.2 14,156 - -1.2 14,165 + -1.9 14,165 + -1.1 14,165 + +1.8 14,178 - +1.2 14,195 + +0.9 14,195 + -1.2 14,198 - -1.5 14,238 - -0.4 14,280 - +1.2 14,336 + MPMX20_00013 0.11 -2.2 14,357 + MPMX20_00013 0.12 -1.0 14,423 + MPMX20_00013 0.18 +2.2 14,431 - MPMX20_00013 0.18 +2.2 14,502 + MPMX20_00013 0.24 +0.6 14,503 - MPMX20_00013 0.24 -0.1 14,510 - MPMX20_00013 0.25 -0.8 14,510 - MPMX20_00013 0.25 -0.6 14,510 - MPMX20_00013 0.25 -1.4 14,522 - MPMX20_00013 0.26 -1.1 14,527 + MPMX20_00013 0.26 -0.4 14,535 - MPMX20_00013 0.27 -0.9 14,560 - MPMX20_00013 0.29 -0.1 14,560 - MPMX20_00013 0.29 -0.0 14,623 + MPMX20_00013 0.34 +1.0 14,646 - MPMX20_00013 0.36 -1.0 14,722 + MPMX20_00013 0.42 -1.6 14,750 + MPMX20_00013 0.44 -2.1 14,782 - MPMX20_00013 0.47 -1.9 14,838 + MPMX20_00013 0.51 +3.8 14,926 - MPMX20_00013 0.59 +1.2 14,971 - MPMX20_00013 0.62 +0.3 14,981 - MPMX20_00013 0.63 +1.0 15,022 + MPMX20_00013 0.66 -1.0 15,051 - MPMX20_00013 0.69 -0.8 15,053 + MPMX20_00013 0.69 +0.1 15,086 + MPMX20_00013 0.72 +0.2 15,123 + MPMX20_00013 0.75 -0.2 15,140 + MPMX20_00013 0.76 -1.4 15,140 + MPMX20_00013 0.76 -0.4 15,145 + MPMX20_00013 0.76 -2.2 15,148 - MPMX20_00013 0.77 -0.4 15,162 - MPMX20_00013 0.78 -1.2 15,208 - MPMX20_00013 0.82 -0.1 15,218 - MPMX20_00013 0.82 -1.2 15,428 + +0.6 15,428 + +0.6 15,428 + +0.2 15,436 - -2.1 15,450 - +0.4 15,515 + MPMX20_00014 0.22 -0.1 15,559 + MPMX20_00014 0.36 -0.4 15,566 + MPMX20_00014 0.38 -1.2 15,566 + MPMX20_00014 0.38 -1.0 15,574 - MPMX20_00014 0.41 -3.2 15,580 + MPMX20_00014 0.43 +1.2 15,657 + MPMX20_00014 0.67 +0.6 15,693 + MPMX20_00014 0.79 +3.7 15,730 - -1.7 15,787 + +0.2 15,787 + +1.2 15,795 - +0.1 15,795 - -1.0 15,795 - -1.4 15,795 - -1.0 15,805 + +1.2 15,805 + -1.2 15,805 + -0.5 15,805 + -1.4 15,805 + -0.1 15,813 - +2.2 15,813 - -0.1 15,813 - -1.2 15,844 + -1.2 15,844 + -0.4 15,852 - -0.5 15,955 + -1.1 15,997 + -0.1 16,003 - -0.1 16,005 - +0.6 16,007 + +0.9 16,015 - +0.5 16,017 + -0.5 16,022 + +0.6 16,022 + +0.0 16,067 + -1.1 16,067 + +0.5 16,141 - MPMX20_00015 0.16 -0.3 16,169 + MPMX20_00015 0.22 -0.8 16,177 - MPMX20_00015 0.24 +0.3 16,179 + MPMX20_00015 0.25 -0.3 16,184 - MPMX20_00015 0.26 -1.5 16,184 - MPMX20_00015 0.26 +2.2 16,184 - MPMX20_00015 0.26 -1.4 16,186 + MPMX20_00015 0.27 -1.0 16,194 - MPMX20_00015 0.28 +0.6 16,216 - MPMX20_00015 0.34 -1.9 16,286 + MPMX20_00015 0.51 -0.6 16,294 - MPMX20_00015 0.53 -1.4 16,298 + MPMX20_00015 0.54 +0.6 16,337 + MPMX20_00015 0.63 +0.4 16,347 - MPMX20_00015 0.66 -1.5 16,385 - MPMX20_00015 0.75 -0.9 16,407 - MPMX20_00015 0.80 -0.0 16,407 - MPMX20_00015 0.80 +1.2 16,417 + MPMX20_00015 0.83 +0.4
Or see this region's nucleotide sequence