Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03798

Experiment: TSB plate, Mixed culture; Bacillus zanthoxyli TBS_056 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03797 and MPMX20_03798 are separated by 3 nucleotidesMPMX20_03798 and MPMX20_03799 are separated by 208 nucleotides MPMX20_03797: MPMX20_03797 - putative L-galactonate transporter, at 4,001,257 to 4,002,468 _03797 MPMX20_03798: MPMX20_03798 - Agmatinase, at 4,002,472 to 4,003,392 _03798 MPMX20_03799: MPMX20_03799 - Biosynthetic arginine decarboxylase, at 4,003,601 to 4,005,577 _03799 Position (kb) 4002 4003 4004Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4001.501 kb on + strand, within MPMX20_03797at 4001.520 kb on + strand, within MPMX20_03797at 4001.520 kb on + strand, within MPMX20_03797at 4001.523 kb on - strand, within MPMX20_03797at 4001.523 kb on - strand, within MPMX20_03797at 4001.523 kb on - strand, within MPMX20_03797at 4001.523 kb on - strand, within MPMX20_03797at 4001.528 kb on - strand, within MPMX20_03797at 4001.528 kb on - strand, within MPMX20_03797at 4001.528 kb on - strand, within MPMX20_03797at 4001.528 kb on - strand, within MPMX20_03797at 4001.528 kb on - strand, within MPMX20_03797at 4001.528 kb on - strand, within MPMX20_03797at 4001.533 kb on - strand, within MPMX20_03797at 4001.534 kb on + strand, within MPMX20_03797at 4001.541 kb on + strand, within MPMX20_03797at 4001.547 kb on - strand, within MPMX20_03797at 4001.571 kb on - strand, within MPMX20_03797at 4001.577 kb on + strand, within MPMX20_03797at 4001.578 kb on + strand, within MPMX20_03797at 4001.620 kb on + strand, within MPMX20_03797at 4001.630 kb on + strand, within MPMX20_03797at 4001.637 kb on + strand, within MPMX20_03797at 4001.656 kb on + strand, within MPMX20_03797at 4001.661 kb on + strand, within MPMX20_03797at 4001.661 kb on + strand, within MPMX20_03797at 4001.661 kb on + strand, within MPMX20_03797at 4001.661 kb on + strand, within MPMX20_03797at 4001.661 kb on + strand, within MPMX20_03797at 4001.661 kb on + strand, within MPMX20_03797at 4001.661 kb on + strand, within MPMX20_03797at 4001.661 kb on + strand, within MPMX20_03797at 4001.661 kb on + strand, within MPMX20_03797at 4001.661 kb on + strand, within MPMX20_03797at 4001.669 kb on - strand, within MPMX20_03797at 4001.669 kb on - strand, within MPMX20_03797at 4001.669 kb on - strand, within MPMX20_03797at 4001.669 kb on - strand, within MPMX20_03797at 4001.684 kb on + strand, within MPMX20_03797at 4001.708 kb on + strand, within MPMX20_03797at 4001.716 kb on - strand, within MPMX20_03797at 4001.728 kb on - strand, within MPMX20_03797at 4001.788 kb on - strand, within MPMX20_03797at 4001.797 kb on + strand, within MPMX20_03797at 4001.805 kb on - strand, within MPMX20_03797at 4001.810 kb on - strand, within MPMX20_03797at 4001.824 kb on + strand, within MPMX20_03797at 4001.860 kb on + strand, within MPMX20_03797at 4001.860 kb on + strand, within MPMX20_03797at 4001.867 kb on + strand, within MPMX20_03797at 4001.867 kb on + strand, within MPMX20_03797at 4001.867 kb on + strand, within MPMX20_03797at 4001.867 kb on + strand, within MPMX20_03797at 4001.867 kb on + strand, within MPMX20_03797at 4001.867 kb on + strand, within MPMX20_03797at 4001.868 kb on - strand, within MPMX20_03797at 4001.875 kb on - strand, within MPMX20_03797at 4001.875 kb on - strand, within MPMX20_03797at 4001.875 kb on - strand, within MPMX20_03797at 4001.875 kb on - strand, within MPMX20_03797at 4001.875 kb on - strand, within MPMX20_03797at 4001.875 kb on - strand, within MPMX20_03797at 4001.875 kb on - strand, within MPMX20_03797at 4001.875 kb on - strand, within MPMX20_03797at 4001.875 kb on - strand, within MPMX20_03797at 4001.893 kb on + strand, within MPMX20_03797at 4001.903 kb on + strand, within MPMX20_03797at 4001.939 kb on - strand, within MPMX20_03797at 4001.993 kb on - strand, within MPMX20_03797at 4002.034 kb on - strand, within MPMX20_03797at 4002.192 kb on - strand, within MPMX20_03797at 4002.214 kb on + strand, within MPMX20_03797at 4002.330 kb on + strand, within MPMX20_03797at 4002.366 kb on - strandat 4002.368 kb on + strandat 4002.376 kb on - strandat 4002.382 kb on + strandat 4002.382 kb on + strandat 4002.399 kb on + strandat 4002.400 kb on - strandat 4002.407 kb on - strandat 4002.572 kb on + strand, within MPMX20_03798at 4002.595 kb on + strand, within MPMX20_03798at 4002.595 kb on + strand, within MPMX20_03798at 4002.603 kb on - strand, within MPMX20_03798at 4002.634 kb on + strand, within MPMX20_03798at 4002.687 kb on + strand, within MPMX20_03798at 4002.695 kb on - strand, within MPMX20_03798at 4002.770 kb on + strand, within MPMX20_03798at 4002.816 kb on - strand, within MPMX20_03798at 4002.817 kb on - strand, within MPMX20_03798at 4002.855 kb on + strand, within MPMX20_03798at 4002.859 kb on - strand, within MPMX20_03798at 4002.864 kb on - strand, within MPMX20_03798at 4002.865 kb on + strand, within MPMX20_03798at 4002.873 kb on - strand, within MPMX20_03798at 4002.887 kb on + strand, within MPMX20_03798at 4002.887 kb on + strand, within MPMX20_03798at 4002.887 kb on + strand, within MPMX20_03798at 4002.887 kb on + strand, within MPMX20_03798at 4002.895 kb on - strand, within MPMX20_03798at 4002.895 kb on - strand, within MPMX20_03798at 4002.939 kb on - strand, within MPMX20_03798at 4003.015 kb on + strand, within MPMX20_03798at 4003.059 kb on + strand, within MPMX20_03798at 4003.072 kb on + strand, within MPMX20_03798at 4003.072 kb on + strand, within MPMX20_03798at 4003.111 kb on + strand, within MPMX20_03798at 4003.111 kb on + strand, within MPMX20_03798at 4003.111 kb on + strand, within MPMX20_03798at 4003.117 kb on + strand, within MPMX20_03798at 4003.125 kb on - strand, within MPMX20_03798at 4003.202 kb on + strand, within MPMX20_03798at 4003.202 kb on + strand, within MPMX20_03798at 4003.205 kb on - strand, within MPMX20_03798at 4003.210 kb on - strand, within MPMX20_03798at 4003.261 kb on - strand, within MPMX20_03798at 4003.279 kb on + strand, within MPMX20_03798at 4003.319 kb on - strandat 4003.393 kb on + strandat 4003.401 kb on - strandat 4003.401 kb on - strandat 4003.411 kb on - strandat 4003.418 kb on + strandat 4003.535 kb on + strandat 4003.543 kb on - strandat 4003.543 kb on - strandat 4003.546 kb on + strandat 4003.555 kb on - strandat 4003.582 kb on - strandat 4003.584 kb on + strandat 4003.584 kb on + strandat 4003.627 kb on - strandat 4003.638 kb on + strandat 4003.676 kb on + strandat 4003.763 kb on + strandat 4003.773 kb on + strandat 4003.778 kb on + strandat 4003.783 kb on + strandat 4003.799 kb on + strand, within MPMX20_03799at 4003.825 kb on - strand, within MPMX20_03799at 4003.846 kb on + strand, within MPMX20_03799at 4003.854 kb on - strand, within MPMX20_03799at 4003.878 kb on + strand, within MPMX20_03799at 4003.929 kb on + strand, within MPMX20_03799at 4003.997 kb on + strand, within MPMX20_03799at 4004.014 kb on - strand, within MPMX20_03799at 4004.036 kb on + strand, within MPMX20_03799at 4004.066 kb on - strand, within MPMX20_03799at 4004.149 kb on - strand, within MPMX20_03799at 4004.149 kb on - strand, within MPMX20_03799at 4004.178 kb on - strand, within MPMX20_03799at 4004.178 kb on - strand, within MPMX20_03799at 4004.197 kb on + strand, within MPMX20_03799at 4004.235 kb on + strand, within MPMX20_03799at 4004.243 kb on - strand, within MPMX20_03799at 4004.243 kb on - strand, within MPMX20_03799at 4004.351 kb on + strand, within MPMX20_03799at 4004.367 kb on - strand, within MPMX20_03799

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, Mixed culture; Bacillus zanthoxyli TBS_056 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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4,001,501 + MPMX20_03797 0.20 +0.2
4,001,520 + MPMX20_03797 0.22 -0.7
4,001,520 + MPMX20_03797 0.22 +1.2
4,001,523 - MPMX20_03797 0.22 -1.5
4,001,523 - MPMX20_03797 0.22 +1.1
4,001,523 - MPMX20_03797 0.22 +1.8
4,001,523 - MPMX20_03797 0.22 +0.8
4,001,528 - MPMX20_03797 0.22 -1.7
4,001,528 - MPMX20_03797 0.22 -0.9
4,001,528 - MPMX20_03797 0.22 -1.0
4,001,528 - MPMX20_03797 0.22 -1.0
4,001,528 - MPMX20_03797 0.22 -0.7
4,001,528 - MPMX20_03797 0.22 -1.4
4,001,533 - MPMX20_03797 0.23 +0.8
4,001,534 + MPMX20_03797 0.23 +2.8
4,001,541 + MPMX20_03797 0.23 -1.1
4,001,547 - MPMX20_03797 0.24 -0.7
4,001,571 - MPMX20_03797 0.26 -2.2
4,001,577 + MPMX20_03797 0.26 +0.9
4,001,578 + MPMX20_03797 0.26 -0.0
4,001,620 + MPMX20_03797 0.30 -0.6
4,001,630 + MPMX20_03797 0.31 +2.2
4,001,637 + MPMX20_03797 0.31 +2.8
4,001,656 + MPMX20_03797 0.33 -2.2
4,001,661 + MPMX20_03797 0.33 -1.0
4,001,661 + MPMX20_03797 0.33 -2.0
4,001,661 + MPMX20_03797 0.33 -0.2
4,001,661 + MPMX20_03797 0.33 -0.7
4,001,661 + MPMX20_03797 0.33 -1.1
4,001,661 + MPMX20_03797 0.33 +0.8
4,001,661 + MPMX20_03797 0.33 -0.9
4,001,661 + MPMX20_03797 0.33 +0.3
4,001,661 + MPMX20_03797 0.33 -1.2
4,001,661 + MPMX20_03797 0.33 +0.2
4,001,669 - MPMX20_03797 0.34 +0.4
4,001,669 - MPMX20_03797 0.34 -0.5
4,001,669 - MPMX20_03797 0.34 +1.3
4,001,669 - MPMX20_03797 0.34 -0.8
4,001,684 + MPMX20_03797 0.35 -0.3
4,001,708 + MPMX20_03797 0.37 +1.4
4,001,716 - MPMX20_03797 0.38 +1.2
4,001,728 - MPMX20_03797 0.39 +1.5
4,001,788 - MPMX20_03797 0.44 -1.0
4,001,797 + MPMX20_03797 0.45 +1.5
4,001,805 - MPMX20_03797 0.45 +0.5
4,001,810 - MPMX20_03797 0.46 -0.9
4,001,824 + MPMX20_03797 0.47 -0.6
4,001,860 + MPMX20_03797 0.50 -0.2
4,001,860 + MPMX20_03797 0.50 +0.5
4,001,867 + MPMX20_03797 0.50 +1.2
4,001,867 + MPMX20_03797 0.50 -0.3
4,001,867 + MPMX20_03797 0.50 -0.7
4,001,867 + MPMX20_03797 0.50 +0.5
4,001,867 + MPMX20_03797 0.50 -2.3
4,001,867 + MPMX20_03797 0.50 -1.1
4,001,868 - MPMX20_03797 0.50 +0.8
4,001,875 - MPMX20_03797 0.51 -0.2
4,001,875 - MPMX20_03797 0.51 -1.3
4,001,875 - MPMX20_03797 0.51 -1.1
4,001,875 - MPMX20_03797 0.51 -1.3
4,001,875 - MPMX20_03797 0.51 -0.6
4,001,875 - MPMX20_03797 0.51 -0.4
4,001,875 - MPMX20_03797 0.51 -0.7
4,001,875 - MPMX20_03797 0.51 -0.0
4,001,875 - MPMX20_03797 0.51 +0.5
4,001,893 + MPMX20_03797 0.52 +0.7
4,001,903 + MPMX20_03797 0.53 +1.8
4,001,939 - MPMX20_03797 0.56 +0.8
4,001,993 - MPMX20_03797 0.61 -1.1
4,002,034 - MPMX20_03797 0.64 +0.8
4,002,192 - MPMX20_03797 0.77 +0.5
4,002,214 + MPMX20_03797 0.79 +0.2
4,002,330 + MPMX20_03797 0.89 +0.5
4,002,366 - -1.1
4,002,368 + -0.6
4,002,376 - -1.4
4,002,382 + -0.9
4,002,382 + -0.7
4,002,399 + -0.8
4,002,400 - +0.2
4,002,407 - -2.0
4,002,572 + MPMX20_03798 0.11 +0.3
4,002,595 + MPMX20_03798 0.13 -0.9
4,002,595 + MPMX20_03798 0.13 -2.5
4,002,603 - MPMX20_03798 0.14 -1.2
4,002,634 + MPMX20_03798 0.18 +1.4
4,002,687 + MPMX20_03798 0.23 -0.5
4,002,695 - MPMX20_03798 0.24 -0.0
4,002,770 + MPMX20_03798 0.32 +0.2
4,002,816 - MPMX20_03798 0.37 -1.9
4,002,817 - MPMX20_03798 0.37 +0.2
4,002,855 + MPMX20_03798 0.42 -0.1
4,002,859 - MPMX20_03798 0.42 -1.8
4,002,864 - MPMX20_03798 0.43 -1.0
4,002,865 + MPMX20_03798 0.43 -1.2
4,002,873 - MPMX20_03798 0.44 -2.1
4,002,887 + MPMX20_03798 0.45 -2.4
4,002,887 + MPMX20_03798 0.45 +0.8
4,002,887 + MPMX20_03798 0.45 +0.5
4,002,887 + MPMX20_03798 0.45 -0.9
4,002,895 - MPMX20_03798 0.46 +0.8
4,002,895 - MPMX20_03798 0.46 -1.3
4,002,939 - MPMX20_03798 0.51 -1.0
4,003,015 + MPMX20_03798 0.59 -0.0
4,003,059 + MPMX20_03798 0.64 -0.0
4,003,072 + MPMX20_03798 0.65 -0.6
4,003,072 + MPMX20_03798 0.65 -2.1
4,003,111 + MPMX20_03798 0.69 -0.4
4,003,111 + MPMX20_03798 0.69 -0.3
4,003,111 + MPMX20_03798 0.69 -0.2
4,003,117 + MPMX20_03798 0.70 -0.0
4,003,125 - MPMX20_03798 0.71 +1.2
4,003,202 + MPMX20_03798 0.79 +0.5
4,003,202 + MPMX20_03798 0.79 +0.5
4,003,205 - MPMX20_03798 0.80 -0.4
4,003,210 - MPMX20_03798 0.80 -2.0
4,003,261 - MPMX20_03798 0.86 -0.8
4,003,279 + MPMX20_03798 0.88 -1.6
4,003,319 - -1.4
4,003,393 + -2.3
4,003,401 - -0.0
4,003,401 - +1.4
4,003,411 - -0.8
4,003,418 + -1.0
4,003,535 + +0.5
4,003,543 - -1.3
4,003,543 - -1.1
4,003,546 + -0.2
4,003,555 - -0.0
4,003,582 - +0.4
4,003,584 + +0.2
4,003,584 + +0.5
4,003,627 - -0.1
4,003,638 + +0.8
4,003,676 + +1.2
4,003,763 + +0.2
4,003,773 + -0.5
4,003,778 + +1.2
4,003,783 + -0.4
4,003,799 + MPMX20_03799 0.10 -0.4
4,003,825 - MPMX20_03799 0.11 -0.2
4,003,846 + MPMX20_03799 0.12 -0.5
4,003,854 - MPMX20_03799 0.13 -0.8
4,003,878 + MPMX20_03799 0.14 -1.2
4,003,929 + MPMX20_03799 0.17 -0.5
4,003,997 + MPMX20_03799 0.20 -1.4
4,004,014 - MPMX20_03799 0.21 -0.8
4,004,036 + MPMX20_03799 0.22 -0.9
4,004,066 - MPMX20_03799 0.24 -0.7
4,004,149 - MPMX20_03799 0.28 +1.2
4,004,149 - MPMX20_03799 0.28 +1.8
4,004,178 - MPMX20_03799 0.29 +1.0
4,004,178 - MPMX20_03799 0.29 -0.0
4,004,197 + MPMX20_03799 0.30 +0.5
4,004,235 + MPMX20_03799 0.32 +0.9
4,004,243 - MPMX20_03799 0.32 +1.5
4,004,243 - MPMX20_03799 0.32 +0.2
4,004,351 + MPMX20_03799 0.38 +1.2
4,004,367 - MPMX20_03799 0.39 -1.9

Or see this region's nucleotide sequence