Experiment: TSB plate, Mixed culture; Bacillus zanthoxyli TBS_056 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03797 and MPMX20_03798 are separated by 3 nucleotides MPMX20_03798 and MPMX20_03799 are separated by 208 nucleotides
MPMX20_03797: MPMX20_03797 - putative L-galactonate transporter, at 4,001,257 to 4,002,468
_03797
MPMX20_03798: MPMX20_03798 - Agmatinase, at 4,002,472 to 4,003,392
_03798
MPMX20_03799: MPMX20_03799 - Biosynthetic arginine decarboxylase, at 4,003,601 to 4,005,577
_03799
Position (kb)
4002
4003
4004 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4001.501 kb on + strand, within MPMX20_03797 at 4001.520 kb on + strand, within MPMX20_03797 at 4001.520 kb on + strand, within MPMX20_03797 at 4001.523 kb on - strand, within MPMX20_03797 at 4001.523 kb on - strand, within MPMX20_03797 at 4001.523 kb on - strand, within MPMX20_03797 at 4001.523 kb on - strand, within MPMX20_03797 at 4001.528 kb on - strand, within MPMX20_03797 at 4001.528 kb on - strand, within MPMX20_03797 at 4001.528 kb on - strand, within MPMX20_03797 at 4001.528 kb on - strand, within MPMX20_03797 at 4001.528 kb on - strand, within MPMX20_03797 at 4001.528 kb on - strand, within MPMX20_03797 at 4001.533 kb on - strand, within MPMX20_03797 at 4001.534 kb on + strand, within MPMX20_03797 at 4001.541 kb on + strand, within MPMX20_03797 at 4001.547 kb on - strand, within MPMX20_03797 at 4001.571 kb on - strand, within MPMX20_03797 at 4001.577 kb on + strand, within MPMX20_03797 at 4001.578 kb on + strand, within MPMX20_03797 at 4001.620 kb on + strand, within MPMX20_03797 at 4001.630 kb on + strand, within MPMX20_03797 at 4001.637 kb on + strand, within MPMX20_03797 at 4001.656 kb on + strand, within MPMX20_03797 at 4001.661 kb on + strand, within MPMX20_03797 at 4001.661 kb on + strand, within MPMX20_03797 at 4001.661 kb on + strand, within MPMX20_03797 at 4001.661 kb on + strand, within MPMX20_03797 at 4001.661 kb on + strand, within MPMX20_03797 at 4001.661 kb on + strand, within MPMX20_03797 at 4001.661 kb on + strand, within MPMX20_03797 at 4001.661 kb on + strand, within MPMX20_03797 at 4001.661 kb on + strand, within MPMX20_03797 at 4001.661 kb on + strand, within MPMX20_03797 at 4001.669 kb on - strand, within MPMX20_03797 at 4001.669 kb on - strand, within MPMX20_03797 at 4001.669 kb on - strand, within MPMX20_03797 at 4001.669 kb on - strand, within MPMX20_03797 at 4001.684 kb on + strand, within MPMX20_03797 at 4001.708 kb on + strand, within MPMX20_03797 at 4001.716 kb on - strand, within MPMX20_03797 at 4001.728 kb on - strand, within MPMX20_03797 at 4001.788 kb on - strand, within MPMX20_03797 at 4001.797 kb on + strand, within MPMX20_03797 at 4001.805 kb on - strand, within MPMX20_03797 at 4001.810 kb on - strand, within MPMX20_03797 at 4001.824 kb on + strand, within MPMX20_03797 at 4001.860 kb on + strand, within MPMX20_03797 at 4001.860 kb on + strand, within MPMX20_03797 at 4001.867 kb on + strand, within MPMX20_03797 at 4001.867 kb on + strand, within MPMX20_03797 at 4001.867 kb on + strand, within MPMX20_03797 at 4001.867 kb on + strand, within MPMX20_03797 at 4001.867 kb on + strand, within MPMX20_03797 at 4001.867 kb on + strand, within MPMX20_03797 at 4001.868 kb on - strand, within MPMX20_03797 at 4001.875 kb on - strand, within MPMX20_03797 at 4001.875 kb on - strand, within MPMX20_03797 at 4001.875 kb on - strand, within MPMX20_03797 at 4001.875 kb on - strand, within MPMX20_03797 at 4001.875 kb on - strand, within MPMX20_03797 at 4001.875 kb on - strand, within MPMX20_03797 at 4001.875 kb on - strand, within MPMX20_03797 at 4001.875 kb on - strand, within MPMX20_03797 at 4001.875 kb on - strand, within MPMX20_03797 at 4001.893 kb on + strand, within MPMX20_03797 at 4001.903 kb on + strand, within MPMX20_03797 at 4001.939 kb on - strand, within MPMX20_03797 at 4001.993 kb on - strand, within MPMX20_03797 at 4002.034 kb on - strand, within MPMX20_03797 at 4002.192 kb on - strand, within MPMX20_03797 at 4002.214 kb on + strand, within MPMX20_03797 at 4002.330 kb on + strand, within MPMX20_03797 at 4002.366 kb on - strand at 4002.368 kb on + strand at 4002.376 kb on - strand at 4002.382 kb on + strand at 4002.382 kb on + strand at 4002.399 kb on + strand at 4002.400 kb on - strand at 4002.407 kb on - strand at 4002.572 kb on + strand, within MPMX20_03798 at 4002.595 kb on + strand, within MPMX20_03798 at 4002.595 kb on + strand, within MPMX20_03798 at 4002.603 kb on - strand, within MPMX20_03798 at 4002.634 kb on + strand, within MPMX20_03798 at 4002.687 kb on + strand, within MPMX20_03798 at 4002.695 kb on - strand, within MPMX20_03798 at 4002.770 kb on + strand, within MPMX20_03798 at 4002.816 kb on - strand, within MPMX20_03798 at 4002.817 kb on - strand, within MPMX20_03798 at 4002.855 kb on + strand, within MPMX20_03798 at 4002.859 kb on - strand, within MPMX20_03798 at 4002.864 kb on - strand, within MPMX20_03798 at 4002.865 kb on + strand, within MPMX20_03798 at 4002.873 kb on - strand, within MPMX20_03798 at 4002.887 kb on + strand, within MPMX20_03798 at 4002.887 kb on + strand, within MPMX20_03798 at 4002.887 kb on + strand, within MPMX20_03798 at 4002.887 kb on + strand, within MPMX20_03798 at 4002.895 kb on - strand, within MPMX20_03798 at 4002.895 kb on - strand, within MPMX20_03798 at 4002.939 kb on - strand, within MPMX20_03798 at 4003.015 kb on + strand, within MPMX20_03798 at 4003.059 kb on + strand, within MPMX20_03798 at 4003.072 kb on + strand, within MPMX20_03798 at 4003.072 kb on + strand, within MPMX20_03798 at 4003.111 kb on + strand, within MPMX20_03798 at 4003.111 kb on + strand, within MPMX20_03798 at 4003.111 kb on + strand, within MPMX20_03798 at 4003.117 kb on + strand, within MPMX20_03798 at 4003.125 kb on - strand, within MPMX20_03798 at 4003.202 kb on + strand, within MPMX20_03798 at 4003.202 kb on + strand, within MPMX20_03798 at 4003.205 kb on - strand, within MPMX20_03798 at 4003.210 kb on - strand, within MPMX20_03798 at 4003.261 kb on - strand, within MPMX20_03798 at 4003.279 kb on + strand, within MPMX20_03798 at 4003.319 kb on - strand at 4003.393 kb on + strand at 4003.401 kb on - strand at 4003.401 kb on - strand at 4003.411 kb on - strand at 4003.418 kb on + strand at 4003.535 kb on + strand at 4003.543 kb on - strand at 4003.543 kb on - strand at 4003.546 kb on + strand at 4003.555 kb on - strand at 4003.582 kb on - strand at 4003.584 kb on + strand at 4003.584 kb on + strand at 4003.627 kb on - strand at 4003.638 kb on + strand at 4003.676 kb on + strand at 4003.763 kb on + strand at 4003.773 kb on + strand at 4003.778 kb on + strand at 4003.783 kb on + strand at 4003.799 kb on + strand, within MPMX20_03799 at 4003.825 kb on - strand, within MPMX20_03799 at 4003.846 kb on + strand, within MPMX20_03799 at 4003.854 kb on - strand, within MPMX20_03799 at 4003.878 kb on + strand, within MPMX20_03799 at 4003.929 kb on + strand, within MPMX20_03799 at 4003.997 kb on + strand, within MPMX20_03799 at 4004.014 kb on - strand, within MPMX20_03799 at 4004.036 kb on + strand, within MPMX20_03799 at 4004.066 kb on - strand, within MPMX20_03799 at 4004.149 kb on - strand, within MPMX20_03799 at 4004.149 kb on - strand, within MPMX20_03799 at 4004.178 kb on - strand, within MPMX20_03799 at 4004.178 kb on - strand, within MPMX20_03799 at 4004.197 kb on + strand, within MPMX20_03799 at 4004.235 kb on + strand, within MPMX20_03799 at 4004.243 kb on - strand, within MPMX20_03799 at 4004.243 kb on - strand, within MPMX20_03799 at 4004.351 kb on + strand, within MPMX20_03799 at 4004.367 kb on - strand, within MPMX20_03799
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, Mixed culture; Bacillus zanthoxyli TBS_056 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 4,001,501 + MPMX20_03797 0.20 +0.2 4,001,520 + MPMX20_03797 0.22 -0.7 4,001,520 + MPMX20_03797 0.22 +1.2 4,001,523 - MPMX20_03797 0.22 -1.5 4,001,523 - MPMX20_03797 0.22 +1.1 4,001,523 - MPMX20_03797 0.22 +1.8 4,001,523 - MPMX20_03797 0.22 +0.8 4,001,528 - MPMX20_03797 0.22 -1.7 4,001,528 - MPMX20_03797 0.22 -0.9 4,001,528 - MPMX20_03797 0.22 -1.0 4,001,528 - MPMX20_03797 0.22 -1.0 4,001,528 - MPMX20_03797 0.22 -0.7 4,001,528 - MPMX20_03797 0.22 -1.4 4,001,533 - MPMX20_03797 0.23 +0.8 4,001,534 + MPMX20_03797 0.23 +2.8 4,001,541 + MPMX20_03797 0.23 -1.1 4,001,547 - MPMX20_03797 0.24 -0.7 4,001,571 - MPMX20_03797 0.26 -2.2 4,001,577 + MPMX20_03797 0.26 +0.9 4,001,578 + MPMX20_03797 0.26 -0.0 4,001,620 + MPMX20_03797 0.30 -0.6 4,001,630 + MPMX20_03797 0.31 +2.2 4,001,637 + MPMX20_03797 0.31 +2.8 4,001,656 + MPMX20_03797 0.33 -2.2 4,001,661 + MPMX20_03797 0.33 -1.0 4,001,661 + MPMX20_03797 0.33 -2.0 4,001,661 + MPMX20_03797 0.33 -0.2 4,001,661 + MPMX20_03797 0.33 -0.7 4,001,661 + MPMX20_03797 0.33 -1.1 4,001,661 + MPMX20_03797 0.33 +0.8 4,001,661 + MPMX20_03797 0.33 -0.9 4,001,661 + MPMX20_03797 0.33 +0.3 4,001,661 + MPMX20_03797 0.33 -1.2 4,001,661 + MPMX20_03797 0.33 +0.2 4,001,669 - MPMX20_03797 0.34 +0.4 4,001,669 - MPMX20_03797 0.34 -0.5 4,001,669 - MPMX20_03797 0.34 +1.3 4,001,669 - MPMX20_03797 0.34 -0.8 4,001,684 + MPMX20_03797 0.35 -0.3 4,001,708 + MPMX20_03797 0.37 +1.4 4,001,716 - MPMX20_03797 0.38 +1.2 4,001,728 - MPMX20_03797 0.39 +1.5 4,001,788 - MPMX20_03797 0.44 -1.0 4,001,797 + MPMX20_03797 0.45 +1.5 4,001,805 - MPMX20_03797 0.45 +0.5 4,001,810 - MPMX20_03797 0.46 -0.9 4,001,824 + MPMX20_03797 0.47 -0.6 4,001,860 + MPMX20_03797 0.50 -0.2 4,001,860 + MPMX20_03797 0.50 +0.5 4,001,867 + MPMX20_03797 0.50 +1.2 4,001,867 + MPMX20_03797 0.50 -0.3 4,001,867 + MPMX20_03797 0.50 -0.7 4,001,867 + MPMX20_03797 0.50 +0.5 4,001,867 + MPMX20_03797 0.50 -2.3 4,001,867 + MPMX20_03797 0.50 -1.1 4,001,868 - MPMX20_03797 0.50 +0.8 4,001,875 - MPMX20_03797 0.51 -0.2 4,001,875 - MPMX20_03797 0.51 -1.3 4,001,875 - MPMX20_03797 0.51 -1.1 4,001,875 - MPMX20_03797 0.51 -1.3 4,001,875 - MPMX20_03797 0.51 -0.6 4,001,875 - MPMX20_03797 0.51 -0.4 4,001,875 - MPMX20_03797 0.51 -0.7 4,001,875 - MPMX20_03797 0.51 -0.0 4,001,875 - MPMX20_03797 0.51 +0.5 4,001,893 + MPMX20_03797 0.52 +0.7 4,001,903 + MPMX20_03797 0.53 +1.8 4,001,939 - MPMX20_03797 0.56 +0.8 4,001,993 - MPMX20_03797 0.61 -1.1 4,002,034 - MPMX20_03797 0.64 +0.8 4,002,192 - MPMX20_03797 0.77 +0.5 4,002,214 + MPMX20_03797 0.79 +0.2 4,002,330 + MPMX20_03797 0.89 +0.5 4,002,366 - -1.1 4,002,368 + -0.6 4,002,376 - -1.4 4,002,382 + -0.9 4,002,382 + -0.7 4,002,399 + -0.8 4,002,400 - +0.2 4,002,407 - -2.0 4,002,572 + MPMX20_03798 0.11 +0.3 4,002,595 + MPMX20_03798 0.13 -0.9 4,002,595 + MPMX20_03798 0.13 -2.5 4,002,603 - MPMX20_03798 0.14 -1.2 4,002,634 + MPMX20_03798 0.18 +1.4 4,002,687 + MPMX20_03798 0.23 -0.5 4,002,695 - MPMX20_03798 0.24 -0.0 4,002,770 + MPMX20_03798 0.32 +0.2 4,002,816 - MPMX20_03798 0.37 -1.9 4,002,817 - MPMX20_03798 0.37 +0.2 4,002,855 + MPMX20_03798 0.42 -0.1 4,002,859 - MPMX20_03798 0.42 -1.8 4,002,864 - MPMX20_03798 0.43 -1.0 4,002,865 + MPMX20_03798 0.43 -1.2 4,002,873 - MPMX20_03798 0.44 -2.1 4,002,887 + MPMX20_03798 0.45 -2.4 4,002,887 + MPMX20_03798 0.45 +0.8 4,002,887 + MPMX20_03798 0.45 +0.5 4,002,887 + MPMX20_03798 0.45 -0.9 4,002,895 - MPMX20_03798 0.46 +0.8 4,002,895 - MPMX20_03798 0.46 -1.3 4,002,939 - MPMX20_03798 0.51 -1.0 4,003,015 + MPMX20_03798 0.59 -0.0 4,003,059 + MPMX20_03798 0.64 -0.0 4,003,072 + MPMX20_03798 0.65 -0.6 4,003,072 + MPMX20_03798 0.65 -2.1 4,003,111 + MPMX20_03798 0.69 -0.4 4,003,111 + MPMX20_03798 0.69 -0.3 4,003,111 + MPMX20_03798 0.69 -0.2 4,003,117 + MPMX20_03798 0.70 -0.0 4,003,125 - MPMX20_03798 0.71 +1.2 4,003,202 + MPMX20_03798 0.79 +0.5 4,003,202 + MPMX20_03798 0.79 +0.5 4,003,205 - MPMX20_03798 0.80 -0.4 4,003,210 - MPMX20_03798 0.80 -2.0 4,003,261 - MPMX20_03798 0.86 -0.8 4,003,279 + MPMX20_03798 0.88 -1.6 4,003,319 - -1.4 4,003,393 + -2.3 4,003,401 - -0.0 4,003,401 - +1.4 4,003,411 - -0.8 4,003,418 + -1.0 4,003,535 + +0.5 4,003,543 - -1.3 4,003,543 - -1.1 4,003,546 + -0.2 4,003,555 - -0.0 4,003,582 - +0.4 4,003,584 + +0.2 4,003,584 + +0.5 4,003,627 - -0.1 4,003,638 + +0.8 4,003,676 + +1.2 4,003,763 + +0.2 4,003,773 + -0.5 4,003,778 + +1.2 4,003,783 + -0.4 4,003,799 + MPMX20_03799 0.10 -0.4 4,003,825 - MPMX20_03799 0.11 -0.2 4,003,846 + MPMX20_03799 0.12 -0.5 4,003,854 - MPMX20_03799 0.13 -0.8 4,003,878 + MPMX20_03799 0.14 -1.2 4,003,929 + MPMX20_03799 0.17 -0.5 4,003,997 + MPMX20_03799 0.20 -1.4 4,004,014 - MPMX20_03799 0.21 -0.8 4,004,036 + MPMX20_03799 0.22 -0.9 4,004,066 - MPMX20_03799 0.24 -0.7 4,004,149 - MPMX20_03799 0.28 +1.2 4,004,149 - MPMX20_03799 0.28 +1.8 4,004,178 - MPMX20_03799 0.29 +1.0 4,004,178 - MPMX20_03799 0.29 -0.0 4,004,197 + MPMX20_03799 0.30 +0.5 4,004,235 + MPMX20_03799 0.32 +0.9 4,004,243 - MPMX20_03799 0.32 +1.5 4,004,243 - MPMX20_03799 0.32 +0.2 4,004,351 + MPMX20_03799 0.38 +1.2 4,004,367 - MPMX20_03799 0.39 -1.9
Or see this region's nucleotide sequence