Experiment: TSB plate, Mixed culture; Bacillus zanthoxyli TBS_056 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03794 and MPMX20_03795 are separated by 10 nucleotides MPMX20_03795 and MPMX20_03796 overlap by 4 nucleotides MPMX20_03796 and MPMX20_03797 are separated by 417 nucleotides
MPMX20_03794: MPMX20_03794 - hypothetical protein, at 3,999,178 to 4,000,200
_03794
MPMX20_03795: MPMX20_03795 - hypothetical protein, at 4,000,211 to 4,000,519
_03795
MPMX20_03796: MPMX20_03796 - Naphthalene 1,2-dioxygenase system, ferredoxin component, at 4,000,516 to 4,000,839
_03796
MPMX20_03797: MPMX20_03797 - putative L-galactonate transporter, at 4,001,257 to 4,002,468
_03797
Position (kb) 4000
4001 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 3999.524 kb on - strand, within MPMX20_03794 at 3999.545 kb on + strand, within MPMX20_03794 at 3999.555 kb on + strand, within MPMX20_03794 at 3999.555 kb on + strand, within MPMX20_03794 at 3999.563 kb on - strand, within MPMX20_03794 at 3999.563 kb on - strand, within MPMX20_03794 at 3999.563 kb on - strand, within MPMX20_03794 at 3999.563 kb on - strand, within MPMX20_03794 at 3999.563 kb on - strand, within MPMX20_03794 at 3999.563 kb on - strand, within MPMX20_03794 at 3999.664 kb on - strand, within MPMX20_03794 at 3999.676 kb on + strand, within MPMX20_03794 at 3999.676 kb on + strand, within MPMX20_03794 at 3999.688 kb on + strand, within MPMX20_03794 at 3999.776 kb on + strand, within MPMX20_03794 at 3999.776 kb on + strand, within MPMX20_03794 at 3999.776 kb on + strand, within MPMX20_03794 at 3999.778 kb on - strand, within MPMX20_03794 at 3999.784 kb on - strand, within MPMX20_03794 at 3999.870 kb on + strand, within MPMX20_03794 at 3999.870 kb on + strand, within MPMX20_03794 at 3999.889 kb on + strand, within MPMX20_03794 at 4000.001 kb on - strand, within MPMX20_03794 at 4000.031 kb on - strand, within MPMX20_03794 at 4000.033 kb on + strand, within MPMX20_03794 at 4000.045 kb on + strand, within MPMX20_03794 at 4000.097 kb on + strand, within MPMX20_03794 at 4000.107 kb on - strand at 4000.128 kb on - strand at 4000.155 kb on - strand at 4000.155 kb on - strand at 4000.159 kb on + strand at 4000.207 kb on + strand at 4000.226 kb on - strand at 4000.226 kb on - strand at 4000.236 kb on + strand at 4000.261 kb on - strand, within MPMX20_03795 at 4000.333 kb on + strand, within MPMX20_03795 at 4000.341 kb on + strand, within MPMX20_03795 at 4000.351 kb on - strand, within MPMX20_03795 at 4000.353 kb on + strand, within MPMX20_03795 at 4000.436 kb on - strand, within MPMX20_03795 at 4000.486 kb on - strand, within MPMX20_03795 at 4000.536 kb on - strand at 4000.587 kb on + strand, within MPMX20_03796 at 4000.596 kb on + strand, within MPMX20_03796 at 4000.596 kb on + strand, within MPMX20_03796 at 4000.596 kb on + strand, within MPMX20_03796 at 4000.596 kb on + strand, within MPMX20_03796 at 4000.596 kb on + strand, within MPMX20_03796 at 4000.596 kb on + strand, within MPMX20_03796 at 4000.604 kb on - strand, within MPMX20_03796 at 4000.604 kb on - strand, within MPMX20_03796 at 4000.604 kb on - strand, within MPMX20_03796 at 4000.604 kb on - strand, within MPMX20_03796 at 4000.604 kb on - strand, within MPMX20_03796 at 4000.604 kb on - strand, within MPMX20_03796 at 4000.604 kb on - strand, within MPMX20_03796 at 4000.615 kb on - strand, within MPMX20_03796 at 4000.655 kb on + strand, within MPMX20_03796 at 4000.684 kb on - strand, within MPMX20_03796 at 4000.695 kb on + strand, within MPMX20_03796 at 4000.695 kb on - strand, within MPMX20_03796 at 4000.697 kb on + strand, within MPMX20_03796 at 4000.697 kb on + strand, within MPMX20_03796 at 4000.697 kb on + strand, within MPMX20_03796 at 4000.710 kb on + strand, within MPMX20_03796 at 4000.718 kb on - strand, within MPMX20_03796 at 4000.718 kb on - strand, within MPMX20_03796 at 4000.725 kb on - strand, within MPMX20_03796 at 4000.757 kb on - strand, within MPMX20_03796 at 4000.769 kb on + strand, within MPMX20_03796 at 4000.769 kb on + strand, within MPMX20_03796 at 4000.769 kb on + strand, within MPMX20_03796 at 4000.775 kb on + strand, within MPMX20_03796 at 4000.777 kb on - strand, within MPMX20_03796 at 4000.809 kb on + strand at 4000.812 kb on - strand at 4000.812 kb on - strand at 4000.819 kb on + strand at 4000.819 kb on + strand at 4000.819 kb on + strand at 4000.819 kb on + strand at 4000.819 kb on + strand at 4000.819 kb on + strand at 4000.819 kb on + strand at 4000.819 kb on + strand at 4000.824 kb on + strand at 4000.824 kb on + strand at 4000.824 kb on + strand at 4000.824 kb on + strand at 4000.824 kb on + strand at 4000.824 kb on + strand at 4000.824 kb on + strand at 4000.824 kb on + strand at 4000.824 kb on + strand at 4000.824 kb on + strand at 4000.827 kb on - strand at 4000.827 kb on - strand at 4000.827 kb on - strand at 4000.827 kb on - strand at 4000.829 kb on + strand at 4000.832 kb on - strand at 4000.832 kb on - strand at 4000.832 kb on - strand at 4000.832 kb on - strand at 4000.832 kb on - strand at 4000.832 kb on - strand at 4000.832 kb on - strand at 4000.832 kb on - strand at 4000.832 kb on - strand at 4000.832 kb on - strand at 4000.832 kb on - strand at 4000.836 kb on - strand at 4000.842 kb on - strand at 4000.845 kb on - strand at 4000.885 kb on + strand at 4000.914 kb on + strand at 4000.916 kb on + strand at 4000.920 kb on + strand at 4000.926 kb on + strand at 4000.926 kb on + strand at 4000.926 kb on + strand at 4000.934 kb on - strand at 4000.943 kb on + strand at 4000.953 kb on + strand at 4000.953 kb on + strand at 4000.958 kb on + strand at 4000.958 kb on + strand at 4000.973 kb on + strand at 4000.973 kb on + strand at 4000.973 kb on + strand at 4000.973 kb on + strand at 4000.973 kb on + strand at 4000.973 kb on + strand at 4000.973 kb on + strand at 4000.973 kb on + strand at 4000.973 kb on + strand at 4000.973 kb on + strand at 4000.973 kb on + strand at 4000.973 kb on + strand at 4000.973 kb on + strand at 4000.973 kb on + strand at 4000.973 kb on + strand at 4000.973 kb on + strand at 4000.973 kb on + strand at 4000.973 kb on + strand at 4000.973 kb on + strand at 4000.973 kb on + strand at 4000.973 kb on + strand at 4000.973 kb on + strand at 4000.973 kb on + strand at 4000.973 kb on + strand at 4000.973 kb on + strand at 4000.973 kb on + strand at 4000.973 kb on + strand at 4000.973 kb on + strand at 4000.973 kb on + strand at 4000.973 kb on + strand at 4000.973 kb on + strand at 4000.973 kb on + strand at 4000.973 kb on + strand at 4000.973 kb on + strand at 4000.973 kb on + strand at 4000.973 kb on + strand at 4000.973 kb on + strand at 4000.973 kb on + strand at 4000.973 kb on + strand at 4000.973 kb on + strand at 4000.973 kb on + strand at 4000.973 kb on + strand at 4000.973 kb on + strand at 4000.973 kb on + strand at 4000.973 kb on + strand at 4000.973 kb on + strand at 4000.973 kb on + strand at 4000.973 kb on + strand at 4000.973 kb on + strand at 4000.973 kb on + strand at 4000.973 kb on + strand at 4000.973 kb on + strand at 4000.973 kb on + strand at 4000.973 kb on + strand at 4000.973 kb on + strand at 4000.973 kb on + strand at 4000.973 kb on + strand at 4000.973 kb on + strand at 4000.973 kb on + strand at 4000.973 kb on + strand at 4000.973 kb on + strand at 4000.973 kb on + strand at 4000.975 kb on + strand at 4000.975 kb on + strand at 4000.975 kb on + strand at 4000.975 kb on + strand at 4000.975 kb on + strand at 4000.975 kb on + strand at 4000.983 kb on - strand at 4000.983 kb on - strand at 4001.214 kb on - strand at 4001.258 kb on - strand at 4001.259 kb on - strand at 4001.295 kb on - strand at 4001.404 kb on + strand, within MPMX20_03797 at 4001.406 kb on - strand, within MPMX20_03797 at 4001.412 kb on - strand, within MPMX20_03797 at 4001.412 kb on - strand, within MPMX20_03797 at 4001.412 kb on - strand, within MPMX20_03797 at 4001.450 kb on + strand, within MPMX20_03797 at 4001.501 kb on + strand, within MPMX20_03797 at 4001.520 kb on + strand, within MPMX20_03797 at 4001.520 kb on + strand, within MPMX20_03797 at 4001.523 kb on - strand, within MPMX20_03797 at 4001.523 kb on - strand, within MPMX20_03797 at 4001.523 kb on - strand, within MPMX20_03797 at 4001.523 kb on - strand, within MPMX20_03797 at 4001.528 kb on - strand, within MPMX20_03797 at 4001.528 kb on - strand, within MPMX20_03797 at 4001.528 kb on - strand, within MPMX20_03797 at 4001.528 kb on - strand, within MPMX20_03797 at 4001.528 kb on - strand, within MPMX20_03797 at 4001.528 kb on - strand, within MPMX20_03797 at 4001.533 kb on - strand, within MPMX20_03797 at 4001.534 kb on + strand, within MPMX20_03797 at 4001.541 kb on + strand, within MPMX20_03797 at 4001.547 kb on - strand, within MPMX20_03797 at 4001.571 kb on - strand, within MPMX20_03797 at 4001.577 kb on + strand, within MPMX20_03797 at 4001.578 kb on + strand, within MPMX20_03797 at 4001.620 kb on + strand, within MPMX20_03797 at 4001.630 kb on + strand, within MPMX20_03797 at 4001.637 kb on + strand, within MPMX20_03797 at 4001.656 kb on + strand, within MPMX20_03797 at 4001.661 kb on + strand, within MPMX20_03797 at 4001.661 kb on + strand, within MPMX20_03797 at 4001.661 kb on + strand, within MPMX20_03797 at 4001.661 kb on + strand, within MPMX20_03797 at 4001.661 kb on + strand, within MPMX20_03797 at 4001.661 kb on + strand, within MPMX20_03797 at 4001.661 kb on + strand, within MPMX20_03797 at 4001.661 kb on + strand, within MPMX20_03797 at 4001.661 kb on + strand, within MPMX20_03797 at 4001.661 kb on + strand, within MPMX20_03797 at 4001.669 kb on - strand, within MPMX20_03797 at 4001.669 kb on - strand, within MPMX20_03797 at 4001.669 kb on - strand, within MPMX20_03797 at 4001.669 kb on - strand, within MPMX20_03797 at 4001.684 kb on + strand, within MPMX20_03797 at 4001.708 kb on + strand, within MPMX20_03797 at 4001.716 kb on - strand, within MPMX20_03797 at 4001.728 kb on - strand, within MPMX20_03797 at 4001.788 kb on - strand, within MPMX20_03797 at 4001.797 kb on + strand, within MPMX20_03797 at 4001.805 kb on - strand, within MPMX20_03797 at 4001.810 kb on - strand, within MPMX20_03797 at 4001.824 kb on + strand, within MPMX20_03797
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, Mixed culture; Bacillus zanthoxyli TBS_056 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 3,999,524 - MPMX20_03794 0.34 +5.0 3,999,545 + MPMX20_03794 0.36 -1.2 3,999,555 + MPMX20_03794 0.37 +3.3 3,999,555 + MPMX20_03794 0.37 -0.8 3,999,563 - MPMX20_03794 0.38 -0.9 3,999,563 - MPMX20_03794 0.38 -0.4 3,999,563 - MPMX20_03794 0.38 -0.8 3,999,563 - MPMX20_03794 0.38 -2.1 3,999,563 - MPMX20_03794 0.38 -1.4 3,999,563 - MPMX20_03794 0.38 +0.1 3,999,664 - MPMX20_03794 0.48 +0.3 3,999,676 + MPMX20_03794 0.49 -0.9 3,999,676 + MPMX20_03794 0.49 +0.5 3,999,688 + MPMX20_03794 0.50 -0.5 3,999,776 + MPMX20_03794 0.58 -1.6 3,999,776 + MPMX20_03794 0.58 +0.5 3,999,776 + MPMX20_03794 0.58 +0.8 3,999,778 - MPMX20_03794 0.59 -0.0 3,999,784 - MPMX20_03794 0.59 -0.3 3,999,870 + MPMX20_03794 0.68 -0.5 3,999,870 + MPMX20_03794 0.68 +0.5 3,999,889 + MPMX20_03794 0.70 -0.4 4,000,001 - MPMX20_03794 0.80 -1.0 4,000,031 - MPMX20_03794 0.83 -0.7 4,000,033 + MPMX20_03794 0.84 -0.2 4,000,045 + MPMX20_03794 0.85 -1.1 4,000,097 + MPMX20_03794 0.90 +1.8 4,000,107 - -3.3 4,000,128 - +0.5 4,000,155 - +1.8 4,000,155 - -0.8 4,000,159 + -0.0 4,000,207 + -1.3 4,000,226 - -0.1 4,000,226 - -0.0 4,000,236 + -1.4 4,000,261 - MPMX20_03795 0.16 -0.8 4,000,333 + MPMX20_03795 0.39 -0.9 4,000,341 + MPMX20_03795 0.42 +1.5 4,000,351 - MPMX20_03795 0.45 -1.5 4,000,353 + MPMX20_03795 0.46 -0.2 4,000,436 - MPMX20_03795 0.73 -0.4 4,000,486 - MPMX20_03795 0.89 -1.5 4,000,536 - -0.6 4,000,587 + MPMX20_03796 0.22 -0.3 4,000,596 + MPMX20_03796 0.25 -0.6 4,000,596 + MPMX20_03796 0.25 +2.8 4,000,596 + MPMX20_03796 0.25 +0.5 4,000,596 + MPMX20_03796 0.25 -0.8 4,000,596 + MPMX20_03796 0.25 -0.2 4,000,596 + MPMX20_03796 0.25 -0.3 4,000,604 - MPMX20_03796 0.27 +0.8 4,000,604 - MPMX20_03796 0.27 -0.8 4,000,604 - MPMX20_03796 0.27 +0.5 4,000,604 - MPMX20_03796 0.27 +1.8 4,000,604 - MPMX20_03796 0.27 -0.9 4,000,604 - MPMX20_03796 0.27 -2.3 4,000,604 - MPMX20_03796 0.27 -0.3 4,000,615 - MPMX20_03796 0.31 -0.8 4,000,655 + MPMX20_03796 0.43 -0.9 4,000,684 - MPMX20_03796 0.52 -0.0 4,000,695 + MPMX20_03796 0.55 -2.0 4,000,695 - MPMX20_03796 0.55 -0.5 4,000,697 + MPMX20_03796 0.56 +0.8 4,000,697 + MPMX20_03796 0.56 -0.3 4,000,697 + MPMX20_03796 0.56 -0.1 4,000,710 + MPMX20_03796 0.60 +0.8 4,000,718 - MPMX20_03796 0.62 -0.1 4,000,718 - MPMX20_03796 0.62 -1.5 4,000,725 - MPMX20_03796 0.65 -1.8 4,000,757 - MPMX20_03796 0.74 +0.8 4,000,769 + MPMX20_03796 0.78 -0.0 4,000,769 + MPMX20_03796 0.78 -0.7 4,000,769 + MPMX20_03796 0.78 -0.7 4,000,775 + MPMX20_03796 0.80 -0.4 4,000,777 - MPMX20_03796 0.81 -1.2 4,000,809 + -0.9 4,000,812 - -1.5 4,000,812 - -0.6 4,000,819 + -0.4 4,000,819 + -0.5 4,000,819 + -0.0 4,000,819 + +0.8 4,000,819 + -1.1 4,000,819 + -1.5 4,000,819 + -0.2 4,000,819 + +1.2 4,000,824 + +1.2 4,000,824 + -2.2 4,000,824 + +1.8 4,000,824 + +0.5 4,000,824 + +1.6 4,000,824 + -0.5 4,000,824 + -0.5 4,000,824 + +1.8 4,000,824 + -1.0 4,000,824 + -1.4 4,000,827 - -1.5 4,000,827 - -0.0 4,000,827 - +0.6 4,000,827 - +0.0 4,000,829 + +0.5 4,000,832 - +0.5 4,000,832 - -1.2 4,000,832 - -1.0 4,000,832 - +1.8 4,000,832 - -2.2 4,000,832 - -0.7 4,000,832 - -1.6 4,000,832 - -0.3 4,000,832 - +2.8 4,000,832 - -0.1 4,000,832 - +0.3 4,000,836 - +0.4 4,000,842 - +1.3 4,000,845 - -1.1 4,000,885 + -0.9 4,000,914 + -0.9 4,000,916 + -0.3 4,000,920 + +0.2 4,000,926 + -1.2 4,000,926 + -1.1 4,000,926 + -0.5 4,000,934 - -1.5 4,000,943 + -0.5 4,000,953 + -1.9 4,000,953 + +1.3 4,000,958 + -0.9 4,000,958 + -1.1 4,000,973 + -1.0 4,000,973 + +3.8 4,000,973 + +0.2 4,000,973 + -1.4 4,000,973 + +1.0 4,000,973 + -1.3 4,000,973 + +1.2 4,000,973 + -0.3 4,000,973 + -0.2 4,000,973 + -0.4 4,000,973 + -0.7 4,000,973 + -1.0 4,000,973 + -0.7 4,000,973 + +1.1 4,000,973 + -1.1 4,000,973 + -2.7 4,000,973 + +1.4 4,000,973 + +0.5 4,000,973 + -1.4 4,000,973 + +0.5 4,000,973 + -0.8 4,000,973 + +1.8 4,000,973 + -0.0 4,000,973 + +0.2 4,000,973 + +0.1 4,000,973 + +2.8 4,000,973 + -1.1 4,000,973 + +0.5 4,000,973 + -1.1 4,000,973 + -1.1 4,000,973 + +0.5 4,000,973 + +0.2 4,000,973 + +1.8 4,000,973 + +0.8 4,000,973 + +1.2 4,000,973 + -0.4 4,000,973 + -1.4 4,000,973 + -2.7 4,000,973 + +0.6 4,000,973 + -0.5 4,000,973 + -1.2 4,000,973 + -0.0 4,000,973 + +1.8 4,000,973 + +0.6 4,000,973 + -1.2 4,000,973 + -2.1 4,000,973 + -1.4 4,000,973 + -0.9 4,000,973 + -1.2 4,000,973 + -0.5 4,000,973 + -2.3 4,000,973 + -0.4 4,000,973 + -0.2 4,000,973 + +1.5 4,000,973 + -1.0 4,000,973 + +1.0 4,000,973 + +0.0 4,000,973 + +0.2 4,000,973 + -0.2 4,000,973 + -0.5 4,000,973 + +4.4 4,000,973 + -0.7 4,000,975 + +0.2 4,000,975 + -1.5 4,000,975 + -1.9 4,000,975 + -0.5 4,000,975 + -1.6 4,000,975 + +0.5 4,000,983 - +2.8 4,000,983 - +1.0 4,001,214 - +1.8 4,001,258 - +0.3 4,001,259 - +2.2 4,001,295 - +0.5 4,001,404 + MPMX20_03797 0.12 -0.3 4,001,406 - MPMX20_03797 0.12 -0.8 4,001,412 - MPMX20_03797 0.13 -1.1 4,001,412 - MPMX20_03797 0.13 +1.8 4,001,412 - MPMX20_03797 0.13 +0.4 4,001,450 + MPMX20_03797 0.16 -1.6 4,001,501 + MPMX20_03797 0.20 +0.2 4,001,520 + MPMX20_03797 0.22 -0.7 4,001,520 + MPMX20_03797 0.22 +1.2 4,001,523 - MPMX20_03797 0.22 -1.5 4,001,523 - MPMX20_03797 0.22 +1.1 4,001,523 - MPMX20_03797 0.22 +1.8 4,001,523 - MPMX20_03797 0.22 +0.8 4,001,528 - MPMX20_03797 0.22 -1.7 4,001,528 - MPMX20_03797 0.22 -0.9 4,001,528 - MPMX20_03797 0.22 -1.0 4,001,528 - MPMX20_03797 0.22 -1.0 4,001,528 - MPMX20_03797 0.22 -0.7 4,001,528 - MPMX20_03797 0.22 -1.4 4,001,533 - MPMX20_03797 0.23 +0.8 4,001,534 + MPMX20_03797 0.23 +2.8 4,001,541 + MPMX20_03797 0.23 -1.1 4,001,547 - MPMX20_03797 0.24 -0.7 4,001,571 - MPMX20_03797 0.26 -2.2 4,001,577 + MPMX20_03797 0.26 +0.9 4,001,578 + MPMX20_03797 0.26 -0.0 4,001,620 + MPMX20_03797 0.30 -0.6 4,001,630 + MPMX20_03797 0.31 +2.2 4,001,637 + MPMX20_03797 0.31 +2.8 4,001,656 + MPMX20_03797 0.33 -2.2 4,001,661 + MPMX20_03797 0.33 -1.0 4,001,661 + MPMX20_03797 0.33 -2.0 4,001,661 + MPMX20_03797 0.33 -0.2 4,001,661 + MPMX20_03797 0.33 -0.7 4,001,661 + MPMX20_03797 0.33 -1.1 4,001,661 + MPMX20_03797 0.33 +0.8 4,001,661 + MPMX20_03797 0.33 -1.0 4,001,661 + MPMX20_03797 0.33 +0.3 4,001,661 + MPMX20_03797 0.33 -1.2 4,001,661 + MPMX20_03797 0.33 +0.2 4,001,669 - MPMX20_03797 0.34 +0.4 4,001,669 - MPMX20_03797 0.34 -0.5 4,001,669 - MPMX20_03797 0.34 +1.3 4,001,669 - MPMX20_03797 0.34 -0.8 4,001,684 + MPMX20_03797 0.35 -0.3 4,001,708 + MPMX20_03797 0.37 +1.4 4,001,716 - MPMX20_03797 0.38 +1.2 4,001,728 - MPMX20_03797 0.39 +1.5 4,001,788 - MPMX20_03797 0.44 -1.0 4,001,797 + MPMX20_03797 0.45 +1.5 4,001,805 - MPMX20_03797 0.45 +0.5 4,001,810 - MPMX20_03797 0.46 -0.9 4,001,824 + MPMX20_03797 0.47 -0.7
Or see this region's nucleotide sequence