Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03473

Experiment: TSB plate, Mixed culture; Bacillus zanthoxyli TBS_056 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03472 and MPMX20_03473 are separated by 12 nucleotidesMPMX20_03473 and MPMX20_03474 are separated by 2 nucleotides MPMX20_03472: MPMX20_03472 - Diguanylate cyclase DgcN, at 3,663,101 to 3,664,321 _03472 MPMX20_03473: MPMX20_03473 - Peptidoglycan-associated lipoprotein, at 3,664,334 to 3,664,819 _03473 MPMX20_03474: MPMX20_03474 - hypothetical protein, at 3,664,822 to 3,666,192 _03474 Position (kb) 3664 3665Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3663.363 kb on - strand, within MPMX20_03472at 3663.378 kb on + strand, within MPMX20_03472at 3663.441 kb on + strand, within MPMX20_03472at 3663.452 kb on + strand, within MPMX20_03472at 3663.559 kb on + strand, within MPMX20_03472at 3663.599 kb on - strand, within MPMX20_03472at 3663.617 kb on + strand, within MPMX20_03472at 3663.624 kb on + strand, within MPMX20_03472at 3663.652 kb on + strand, within MPMX20_03472at 3663.652 kb on + strand, within MPMX20_03472at 3663.652 kb on + strand, within MPMX20_03472at 3663.669 kb on + strand, within MPMX20_03472at 3663.709 kb on - strand, within MPMX20_03472at 3663.709 kb on - strand, within MPMX20_03472at 3663.721 kb on + strand, within MPMX20_03472at 3663.764 kb on + strand, within MPMX20_03472at 3663.774 kb on - strand, within MPMX20_03472at 3663.786 kb on + strand, within MPMX20_03472at 3663.830 kb on + strand, within MPMX20_03472at 3663.830 kb on + strand, within MPMX20_03472at 3663.838 kb on - strand, within MPMX20_03472at 3663.842 kb on + strand, within MPMX20_03472at 3663.863 kb on + strand, within MPMX20_03472at 3663.938 kb on + strand, within MPMX20_03472at 3663.943 kb on + strand, within MPMX20_03472at 3663.943 kb on + strand, within MPMX20_03472at 3663.943 kb on + strand, within MPMX20_03472at 3663.946 kb on - strand, within MPMX20_03472at 3663.990 kb on - strand, within MPMX20_03472at 3663.996 kb on + strand, within MPMX20_03472at 3663.998 kb on + strand, within MPMX20_03472at 3664.005 kb on + strand, within MPMX20_03472at 3664.006 kb on - strand, within MPMX20_03472at 3664.006 kb on - strand, within MPMX20_03472at 3664.006 kb on - strand, within MPMX20_03472at 3664.015 kb on + strand, within MPMX20_03472at 3664.071 kb on - strand, within MPMX20_03472at 3664.097 kb on + strand, within MPMX20_03472at 3664.097 kb on + strand, within MPMX20_03472at 3664.097 kb on + strand, within MPMX20_03472at 3664.099 kb on + strand, within MPMX20_03472at 3664.105 kb on - strand, within MPMX20_03472at 3664.105 kb on - strand, within MPMX20_03472at 3664.107 kb on - strand, within MPMX20_03472at 3664.127 kb on + strand, within MPMX20_03472at 3664.153 kb on - strand, within MPMX20_03472at 3664.212 kb on + strandat 3664.212 kb on + strandat 3664.212 kb on + strandat 3664.212 kb on + strandat 3664.220 kb on - strandat 3664.226 kb on - strandat 3664.231 kb on - strandat 3664.231 kb on - strandat 3664.252 kb on + strandat 3664.278 kb on + strandat 3664.357 kb on + strandat 3664.360 kb on + strandat 3664.374 kb on - strandat 3664.393 kb on - strand, within MPMX20_03473at 3664.411 kb on + strand, within MPMX20_03473at 3664.424 kb on - strand, within MPMX20_03473at 3664.424 kb on - strand, within MPMX20_03473at 3664.476 kb on + strand, within MPMX20_03473at 3664.476 kb on + strand, within MPMX20_03473at 3664.486 kb on + strand, within MPMX20_03473at 3664.494 kb on - strand, within MPMX20_03473at 3664.494 kb on - strand, within MPMX20_03473at 3664.546 kb on + strand, within MPMX20_03473at 3664.546 kb on + strand, within MPMX20_03473at 3664.588 kb on - strand, within MPMX20_03473at 3664.756 kb on + strand, within MPMX20_03473at 3664.756 kb on + strand, within MPMX20_03473at 3664.814 kb on + strandat 3664.822 kb on - strandat 3664.892 kb on + strandat 3664.896 kb on + strandat 3664.910 kb on + strandat 3664.985 kb on + strand, within MPMX20_03474at 3664.998 kb on - strand, within MPMX20_03474at 3665.082 kb on + strand, within MPMX20_03474at 3665.082 kb on + strand, within MPMX20_03474at 3665.082 kb on + strand, within MPMX20_03474at 3665.090 kb on - strand, within MPMX20_03474at 3665.090 kb on - strand, within MPMX20_03474at 3665.090 kb on - strand, within MPMX20_03474at 3665.090 kb on - strand, within MPMX20_03474at 3665.090 kb on - strand, within MPMX20_03474at 3665.203 kb on + strand, within MPMX20_03474at 3665.206 kb on - strand, within MPMX20_03474at 3665.282 kb on + strand, within MPMX20_03474at 3665.282 kb on + strand, within MPMX20_03474at 3665.282 kb on + strand, within MPMX20_03474at 3665.282 kb on + strand, within MPMX20_03474at 3665.282 kb on + strand, within MPMX20_03474at 3665.290 kb on - strand, within MPMX20_03474at 3665.290 kb on - strand, within MPMX20_03474at 3665.290 kb on - strand, within MPMX20_03474at 3665.290 kb on - strand, within MPMX20_03474at 3665.290 kb on - strand, within MPMX20_03474at 3665.290 kb on - strand, within MPMX20_03474at 3665.290 kb on - strand, within MPMX20_03474at 3665.474 kb on + strand, within MPMX20_03474at 3665.474 kb on + strand, within MPMX20_03474at 3665.474 kb on + strand, within MPMX20_03474at 3665.474 kb on + strand, within MPMX20_03474at 3665.482 kb on - strand, within MPMX20_03474at 3665.482 kb on - strand, within MPMX20_03474at 3665.482 kb on - strand, within MPMX20_03474at 3665.482 kb on - strand, within MPMX20_03474at 3665.487 kb on + strand, within MPMX20_03474at 3665.487 kb on - strand, within MPMX20_03474at 3665.495 kb on - strand, within MPMX20_03474at 3665.522 kb on - strand, within MPMX20_03474at 3665.524 kb on - strand, within MPMX20_03474at 3665.556 kb on - strand, within MPMX20_03474at 3665.577 kb on - strand, within MPMX20_03474at 3665.590 kb on + strand, within MPMX20_03474at 3665.591 kb on + strand, within MPMX20_03474at 3665.591 kb on + strand, within MPMX20_03474

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, Mixed culture; Bacillus zanthoxyli TBS_056 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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3,663,363 - MPMX20_03472 0.21 -1.0
3,663,378 + MPMX20_03472 0.23 -2.5
3,663,441 + MPMX20_03472 0.28 +0.3
3,663,452 + MPMX20_03472 0.29 +0.1
3,663,559 + MPMX20_03472 0.38 -0.9
3,663,599 - MPMX20_03472 0.41 -1.0
3,663,617 + MPMX20_03472 0.42 -0.2
3,663,624 + MPMX20_03472 0.43 -1.5
3,663,652 + MPMX20_03472 0.45 +0.5
3,663,652 + MPMX20_03472 0.45 +0.1
3,663,652 + MPMX20_03472 0.45 +0.5
3,663,669 + MPMX20_03472 0.47 +0.5
3,663,709 - MPMX20_03472 0.50 +1.9
3,663,709 - MPMX20_03472 0.50 -2.0
3,663,721 + MPMX20_03472 0.51 -1.4
3,663,764 + MPMX20_03472 0.54 +0.5
3,663,774 - MPMX20_03472 0.55 +1.3
3,663,786 + MPMX20_03472 0.56 -0.3
3,663,830 + MPMX20_03472 0.60 +0.9
3,663,830 + MPMX20_03472 0.60 -0.3
3,663,838 - MPMX20_03472 0.60 +0.9
3,663,842 + MPMX20_03472 0.61 -0.7
3,663,863 + MPMX20_03472 0.62 -0.9
3,663,938 + MPMX20_03472 0.69 -1.7
3,663,943 + MPMX20_03472 0.69 +1.9
3,663,943 + MPMX20_03472 0.69 +1.9
3,663,943 + MPMX20_03472 0.69 -1.8
3,663,946 - MPMX20_03472 0.69 +1.1
3,663,990 - MPMX20_03472 0.73 -0.9
3,663,996 + MPMX20_03472 0.73 +0.3
3,663,998 + MPMX20_03472 0.73 -0.5
3,664,005 + MPMX20_03472 0.74 +0.5
3,664,006 - MPMX20_03472 0.74 +0.2
3,664,006 - MPMX20_03472 0.74 +1.3
3,664,006 - MPMX20_03472 0.74 -0.7
3,664,015 + MPMX20_03472 0.75 -0.6
3,664,071 - MPMX20_03472 0.79 -2.3
3,664,097 + MPMX20_03472 0.82 -0.1
3,664,097 + MPMX20_03472 0.82 -1.6
3,664,097 + MPMX20_03472 0.82 -0.3
3,664,099 + MPMX20_03472 0.82 -0.0
3,664,105 - MPMX20_03472 0.82 +2.9
3,664,105 - MPMX20_03472 0.82 -1.2
3,664,107 - MPMX20_03472 0.82 -1.2
3,664,127 + MPMX20_03472 0.84 +0.6
3,664,153 - MPMX20_03472 0.86 +0.1
3,664,212 + +0.3
3,664,212 + +0.5
3,664,212 + +0.3
3,664,212 + -1.3
3,664,220 - -1.5
3,664,226 - +0.0
3,664,231 - -0.0
3,664,231 - -3.1
3,664,252 + -0.7
3,664,278 + +0.9
3,664,357 + +0.5
3,664,360 + +1.3
3,664,374 - +0.9
3,664,393 - MPMX20_03473 0.12 -1.4
3,664,411 + MPMX20_03473 0.16 +0.5
3,664,424 - MPMX20_03473 0.19 -1.2
3,664,424 - MPMX20_03473 0.19 -0.8
3,664,476 + MPMX20_03473 0.29 -0.6
3,664,476 + MPMX20_03473 0.29 -1.3
3,664,486 + MPMX20_03473 0.31 -1.8
3,664,494 - MPMX20_03473 0.33 +2.9
3,664,494 - MPMX20_03473 0.33 -1.2
3,664,546 + MPMX20_03473 0.44 -0.3
3,664,546 + MPMX20_03473 0.44 -1.8
3,664,588 - MPMX20_03473 0.52 -1.2
3,664,756 + MPMX20_03473 0.87 -1.5
3,664,756 + MPMX20_03473 0.87 -0.7
3,664,814 + -0.3
3,664,822 - -0.6
3,664,892 + +0.3
3,664,896 + +0.9
3,664,910 + +2.9
3,664,985 + MPMX20_03474 0.12 +0.5
3,664,998 - MPMX20_03474 0.13 -0.2
3,665,082 + MPMX20_03474 0.19 -0.3
3,665,082 + MPMX20_03474 0.19 -2.0
3,665,082 + MPMX20_03474 0.19 -0.6
3,665,090 - MPMX20_03474 0.20 -0.5
3,665,090 - MPMX20_03474 0.20 -0.3
3,665,090 - MPMX20_03474 0.20 +0.1
3,665,090 - MPMX20_03474 0.20 +0.9
3,665,090 - MPMX20_03474 0.20 +0.2
3,665,203 + MPMX20_03474 0.28 -0.3
3,665,206 - MPMX20_03474 0.28 -0.5
3,665,282 + MPMX20_03474 0.34 -0.7
3,665,282 + MPMX20_03474 0.34 -0.3
3,665,282 + MPMX20_03474 0.34 -0.6
3,665,282 + MPMX20_03474 0.34 -0.8
3,665,282 + MPMX20_03474 0.34 -1.2
3,665,290 - MPMX20_03474 0.34 -1.2
3,665,290 - MPMX20_03474 0.34 +0.5
3,665,290 - MPMX20_03474 0.34 +0.9
3,665,290 - MPMX20_03474 0.34 +0.4
3,665,290 - MPMX20_03474 0.34 -0.1
3,665,290 - MPMX20_03474 0.34 -0.1
3,665,290 - MPMX20_03474 0.34 -1.7
3,665,474 + MPMX20_03474 0.48 -1.5
3,665,474 + MPMX20_03474 0.48 -0.7
3,665,474 + MPMX20_03474 0.48 -0.5
3,665,474 + MPMX20_03474 0.48 -0.3
3,665,482 - MPMX20_03474 0.48 +0.3
3,665,482 - MPMX20_03474 0.48 +0.1
3,665,482 - MPMX20_03474 0.48 +0.1
3,665,482 - MPMX20_03474 0.48 +0.9
3,665,487 + MPMX20_03474 0.49 -0.2
3,665,487 - MPMX20_03474 0.49 -0.5
3,665,495 - MPMX20_03474 0.49 -0.6
3,665,522 - MPMX20_03474 0.51 +1.1
3,665,524 - MPMX20_03474 0.51 -0.7
3,665,556 - MPMX20_03474 0.54 +0.5
3,665,577 - MPMX20_03474 0.55 -0.2
3,665,590 + MPMX20_03474 0.56 -0.6
3,665,591 + MPMX20_03474 0.56 -0.3
3,665,591 + MPMX20_03474 0.56 -0.0

Or see this region's nucleotide sequence