Experiment: TSB plate, Mixed culture; Bacillus zanthoxyli TBS_056 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03324 and MPMX20_03325 are separated by 290 nucleotides MPMX20_03325 and MPMX20_03326 are separated by 19 nucleotides
MPMX20_03324: MPMX20_03324 - NADP-dependent malic enzyme, at 3,491,422 to 3,493,701
_03324
MPMX20_03325: MPMX20_03325 - Transaldolase, at 3,493,992 to 3,494,942
_03325
MPMX20_03326: MPMX20_03326 - Transketolase 2, at 3,494,962 to 3,496,950
_03326
Position (kb)
3493
3494
3495 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 3493.063 kb on - strand, within MPMX20_03324 at 3493.063 kb on - strand, within MPMX20_03324 at 3493.089 kb on + strand, within MPMX20_03324 at 3493.164 kb on + strand, within MPMX20_03324 at 3493.168 kb on - strand, within MPMX20_03324 at 3493.213 kb on - strand, within MPMX20_03324 at 3493.237 kb on + strand, within MPMX20_03324 at 3493.245 kb on - strand, within MPMX20_03324 at 3493.301 kb on - strand, within MPMX20_03324 at 3493.306 kb on - strand, within MPMX20_03324 at 3493.583 kb on + strand at 3493.593 kb on + strand at 3493.732 kb on - strand at 3493.766 kb on - strand at 3493.779 kb on - strand at 3493.801 kb on + strand at 3493.825 kb on - strand at 3493.858 kb on - strand at 3493.863 kb on + strand at 3493.947 kb on - strand at 3493.948 kb on - strand at 3494.080 kb on - strand at 3494.080 kb on - strand at 3494.095 kb on + strand, within MPMX20_03325 at 3494.105 kb on + strand, within MPMX20_03325 at 3494.105 kb on + strand, within MPMX20_03325 at 3494.161 kb on + strand, within MPMX20_03325 at 3494.161 kb on + strand, within MPMX20_03325 at 3494.161 kb on + strand, within MPMX20_03325 at 3494.169 kb on - strand, within MPMX20_03325 at 3494.169 kb on - strand, within MPMX20_03325 at 3494.179 kb on - strand, within MPMX20_03325 at 3494.184 kb on - strand, within MPMX20_03325 at 3494.303 kb on + strand, within MPMX20_03325 at 3494.386 kb on - strand, within MPMX20_03325 at 3494.388 kb on + strand, within MPMX20_03325 at 3494.462 kb on + strand, within MPMX20_03325 at 3494.478 kb on + strand, within MPMX20_03325 at 3494.483 kb on + strand, within MPMX20_03325 at 3494.485 kb on - strand, within MPMX20_03325 at 3494.547 kb on - strand, within MPMX20_03325 at 3494.623 kb on + strand, within MPMX20_03325 at 3494.628 kb on + strand, within MPMX20_03325 at 3494.631 kb on - strand, within MPMX20_03325 at 3494.657 kb on - strand, within MPMX20_03325 at 3494.704 kb on + strand, within MPMX20_03325 at 3494.709 kb on - strand, within MPMX20_03325 at 3494.722 kb on + strand, within MPMX20_03325 at 3494.722 kb on + strand, within MPMX20_03325 at 3494.722 kb on + strand, within MPMX20_03325 at 3494.722 kb on + strand, within MPMX20_03325 at 3494.722 kb on + strand, within MPMX20_03325 at 3494.722 kb on + strand, within MPMX20_03325 at 3494.722 kb on + strand, within MPMX20_03325 at 3494.722 kb on + strand, within MPMX20_03325 at 3494.722 kb on + strand, within MPMX20_03325 at 3494.722 kb on + strand, within MPMX20_03325 at 3494.722 kb on + strand, within MPMX20_03325 at 3494.730 kb on - strand, within MPMX20_03325 at 3494.730 kb on - strand, within MPMX20_03325 at 3494.730 kb on - strand, within MPMX20_03325 at 3494.730 kb on - strand, within MPMX20_03325 at 3494.730 kb on - strand, within MPMX20_03325 at 3494.730 kb on - strand, within MPMX20_03325 at 3494.785 kb on + strand, within MPMX20_03325 at 3494.793 kb on - strand, within MPMX20_03325 at 3494.804 kb on + strand, within MPMX20_03325 at 3494.812 kb on - strand, within MPMX20_03325 at 3494.899 kb on - strand at 3494.944 kb on - strand at 3494.969 kb on + strand at 3494.974 kb on + strand at 3494.974 kb on + strand at 3494.974 kb on - strand at 3495.036 kb on + strand at 3495.128 kb on - strand at 3495.134 kb on + strand at 3495.142 kb on - strand at 3495.142 kb on - strand at 3495.158 kb on + strand at 3495.158 kb on + strand at 3495.158 kb on + strand at 3495.158 kb on + strand at 3495.166 kb on - strand, within MPMX20_03326 at 3495.166 kb on - strand, within MPMX20_03326 at 3495.166 kb on - strand, within MPMX20_03326 at 3495.166 kb on - strand, within MPMX20_03326 at 3495.168 kb on + strand, within MPMX20_03326 at 3495.168 kb on + strand, within MPMX20_03326 at 3495.176 kb on - strand, within MPMX20_03326 at 3495.176 kb on - strand, within MPMX20_03326 at 3495.186 kb on - strand, within MPMX20_03326 at 3495.269 kb on + strand, within MPMX20_03326 at 3495.307 kb on + strand, within MPMX20_03326 at 3495.313 kb on + strand, within MPMX20_03326 at 3495.313 kb on + strand, within MPMX20_03326 at 3495.313 kb on + strand, within MPMX20_03326 at 3495.340 kb on - strand, within MPMX20_03326 at 3495.411 kb on + strand, within MPMX20_03326 at 3495.428 kb on + strand, within MPMX20_03326 at 3495.473 kb on + strand, within MPMX20_03326 at 3495.481 kb on - strand, within MPMX20_03326 at 3495.481 kb on - strand, within MPMX20_03326 at 3495.481 kb on - strand, within MPMX20_03326 at 3495.483 kb on + strand, within MPMX20_03326 at 3495.507 kb on + strand, within MPMX20_03326 at 3495.562 kb on + strand, within MPMX20_03326 at 3495.751 kb on - strand, within MPMX20_03326 at 3495.756 kb on - strand, within MPMX20_03326 at 3495.769 kb on + strand, within MPMX20_03326 at 3495.777 kb on - strand, within MPMX20_03326 at 3495.833 kb on - strand, within MPMX20_03326 at 3495.853 kb on - strand, within MPMX20_03326
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, Mixed culture; Bacillus zanthoxyli TBS_056 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 3,493,063 - MPMX20_03324 0.72 +0.1 3,493,063 - MPMX20_03324 0.72 -1.1 3,493,089 + MPMX20_03324 0.73 -0.1 3,493,164 + MPMX20_03324 0.76 -0.5 3,493,168 - MPMX20_03324 0.77 +0.1 3,493,213 - MPMX20_03324 0.79 +0.5 3,493,237 + MPMX20_03324 0.80 -1.1 3,493,245 - MPMX20_03324 0.80 +4.6 3,493,301 - MPMX20_03324 0.82 -0.5 3,493,306 - MPMX20_03324 0.83 -0.9 3,493,583 + -1.5 3,493,593 + +4.0 3,493,732 - +0.6 3,493,766 - -1.7 3,493,779 - -1.0 3,493,801 + +0.5 3,493,825 - +1.2 3,493,858 - +1.0 3,493,863 + -0.2 3,493,947 - +1.0 3,493,948 - +1.0 3,494,080 - -1.0 3,494,080 - -0.6 3,494,095 + MPMX20_03325 0.11 -1.0 3,494,105 + MPMX20_03325 0.12 +0.5 3,494,105 + MPMX20_03325 0.12 -0.9 3,494,161 + MPMX20_03325 0.18 -0.6 3,494,161 + MPMX20_03325 0.18 -1.6 3,494,161 + MPMX20_03325 0.18 -0.1 3,494,169 - MPMX20_03325 0.19 +0.2 3,494,169 - MPMX20_03325 0.19 -0.8 3,494,179 - MPMX20_03325 0.20 -0.2 3,494,184 - MPMX20_03325 0.20 +0.2 3,494,303 + MPMX20_03325 0.33 +1.2 3,494,386 - MPMX20_03325 0.41 -0.7 3,494,388 + MPMX20_03325 0.42 +1.4 3,494,462 + MPMX20_03325 0.49 -0.2 3,494,478 + MPMX20_03325 0.51 -0.3 3,494,483 + MPMX20_03325 0.52 -0.9 3,494,485 - MPMX20_03325 0.52 -0.6 3,494,547 - MPMX20_03325 0.58 +0.2 3,494,623 + MPMX20_03325 0.66 -2.7 3,494,628 + MPMX20_03325 0.67 +0.6 3,494,631 - MPMX20_03325 0.67 -1.7 3,494,657 - MPMX20_03325 0.70 -1.4 3,494,704 + MPMX20_03325 0.75 -2.1 3,494,709 - MPMX20_03325 0.75 +0.4 3,494,722 + MPMX20_03325 0.77 -1.2 3,494,722 + MPMX20_03325 0.77 -0.2 3,494,722 + MPMX20_03325 0.77 -1.0 3,494,722 + MPMX20_03325 0.77 -2.7 3,494,722 + MPMX20_03325 0.77 -2.3 3,494,722 + MPMX20_03325 0.77 -2.2 3,494,722 + MPMX20_03325 0.77 +0.6 3,494,722 + MPMX20_03325 0.77 +0.2 3,494,722 + MPMX20_03325 0.77 -0.6 3,494,722 + MPMX20_03325 0.77 +0.2 3,494,722 + MPMX20_03325 0.77 +0.4 3,494,730 - MPMX20_03325 0.78 +0.6 3,494,730 - MPMX20_03325 0.78 +0.5 3,494,730 - MPMX20_03325 0.78 +2.0 3,494,730 - MPMX20_03325 0.78 +0.9 3,494,730 - MPMX20_03325 0.78 -0.2 3,494,730 - MPMX20_03325 0.78 +0.1 3,494,785 + MPMX20_03325 0.83 -1.1 3,494,793 - MPMX20_03325 0.84 -1.2 3,494,804 + MPMX20_03325 0.85 +2.2 3,494,812 - MPMX20_03325 0.86 -1.2 3,494,899 - -0.2 3,494,944 - +0.3 3,494,969 + -1.6 3,494,974 + +0.6 3,494,974 + +2.4 3,494,974 - -0.0 3,495,036 + -0.4 3,495,128 - +0.2 3,495,134 + -1.5 3,495,142 - +0.6 3,495,142 - -0.5 3,495,158 + -0.4 3,495,158 + -0.9 3,495,158 + -0.1 3,495,158 + -0.8 3,495,166 - MPMX20_03326 0.10 -0.9 3,495,166 - MPMX20_03326 0.10 +2.0 3,495,166 - MPMX20_03326 0.10 +0.2 3,495,166 - MPMX20_03326 0.10 +1.6 3,495,168 + MPMX20_03326 0.10 +0.2 3,495,168 + MPMX20_03326 0.10 +0.6 3,495,176 - MPMX20_03326 0.11 -2.7 3,495,176 - MPMX20_03326 0.11 -2.3 3,495,186 - MPMX20_03326 0.11 -1.4 3,495,269 + MPMX20_03326 0.15 -0.0 3,495,307 + MPMX20_03326 0.17 -0.2 3,495,313 + MPMX20_03326 0.18 +1.4 3,495,313 + MPMX20_03326 0.18 +0.6 3,495,313 + MPMX20_03326 0.18 -1.5 3,495,340 - MPMX20_03326 0.19 +0.3 3,495,411 + MPMX20_03326 0.23 +1.4 3,495,428 + MPMX20_03326 0.23 -1.7 3,495,473 + MPMX20_03326 0.26 +0.6 3,495,481 - MPMX20_03326 0.26 +0.3 3,495,481 - MPMX20_03326 0.26 -0.5 3,495,481 - MPMX20_03326 0.26 -0.2 3,495,483 + MPMX20_03326 0.26 +0.1 3,495,507 + MPMX20_03326 0.27 -1.5 3,495,562 + MPMX20_03326 0.30 -1.8 3,495,751 - MPMX20_03326 0.40 +0.2 3,495,756 - MPMX20_03326 0.40 -0.8 3,495,769 + MPMX20_03326 0.41 -1.0 3,495,777 - MPMX20_03326 0.41 -0.7 3,495,833 - MPMX20_03326 0.44 -1.1 3,495,853 - MPMX20_03326 0.45 -2.3
Or see this region's nucleotide sequence