Experiment: TSB plate, Mixed culture; Bacillus zanthoxyli TBS_056 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03112 and MPMX20_03113 are separated by 194 nucleotides MPMX20_03113 and MPMX20_03114 overlap by 4 nucleotides MPMX20_03114 and MPMX20_03115 are separated by 129 nucleotides
MPMX20_03112: MPMX20_03112 - tRNA-dihydrouridine(16) synthase, at 3,268,334 to 3,269,266
_03112
MPMX20_03113: MPMX20_03113 - hypothetical protein, at 3,269,461 to 3,269,859
_03113
MPMX20_03114: MPMX20_03114 - Inner membrane protein YohK, at 3,269,856 to 3,270,551
_03114
MPMX20_03115: MPMX20_03115 - Cytidine deaminase, at 3,270,681 to 3,271,565
_03115
Position (kb)
3269
3270
3271 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 3268.857 kb on - strand, within MPMX20_03112 at 3268.857 kb on - strand, within MPMX20_03112 at 3268.857 kb on - strand, within MPMX20_03112 at 3268.857 kb on - strand, within MPMX20_03112 at 3268.857 kb on - strand, within MPMX20_03112 at 3268.857 kb on - strand, within MPMX20_03112 at 3268.881 kb on + strand, within MPMX20_03112 at 3268.905 kb on + strand, within MPMX20_03112 at 3268.913 kb on - strand, within MPMX20_03112 at 3268.913 kb on - strand, within MPMX20_03112 at 3268.990 kb on - strand, within MPMX20_03112 at 3269.001 kb on + strand, within MPMX20_03112 at 3269.008 kb on + strand, within MPMX20_03112 at 3269.081 kb on + strand, within MPMX20_03112 at 3269.096 kb on + strand, within MPMX20_03112 at 3269.096 kb on + strand, within MPMX20_03112 at 3269.110 kb on + strand, within MPMX20_03112 at 3269.221 kb on + strand at 3269.246 kb on - strand at 3269.250 kb on - strand at 3269.323 kb on + strand at 3269.324 kb on - strand at 3269.349 kb on + strand at 3269.351 kb on - strand at 3269.352 kb on - strand at 3269.371 kb on + strand at 3269.379 kb on - strand at 3269.494 kb on - strand at 3269.501 kb on + strand, within MPMX20_03113 at 3269.511 kb on + strand, within MPMX20_03113 at 3269.511 kb on + strand, within MPMX20_03113 at 3269.581 kb on + strand, within MPMX20_03113 at 3269.637 kb on + strand, within MPMX20_03113 at 3269.637 kb on + strand, within MPMX20_03113 at 3269.645 kb on - strand, within MPMX20_03113 at 3269.645 kb on - strand, within MPMX20_03113 at 3269.645 kb on - strand, within MPMX20_03113 at 3269.645 kb on - strand, within MPMX20_03113 at 3269.645 kb on - strand, within MPMX20_03113 at 3269.650 kb on - strand, within MPMX20_03113 at 3269.651 kb on + strand, within MPMX20_03113 at 3269.659 kb on - strand, within MPMX20_03113 at 3269.696 kb on + strand, within MPMX20_03113 at 3269.704 kb on - strand, within MPMX20_03113 at 3269.704 kb on - strand, within MPMX20_03113 at 3269.766 kb on - strand, within MPMX20_03113 at 3269.900 kb on + strand at 3269.908 kb on - strand at 3269.908 kb on - strand at 3269.978 kb on - strand, within MPMX20_03114 at 3270.077 kb on - strand, within MPMX20_03114 at 3270.188 kb on + strand, within MPMX20_03114 at 3270.188 kb on + strand, within MPMX20_03114 at 3270.191 kb on - strand, within MPMX20_03114 at 3270.196 kb on - strand, within MPMX20_03114 at 3270.235 kb on - strand, within MPMX20_03114 at 3270.283 kb on - strand, within MPMX20_03114 at 3270.379 kb on - strand, within MPMX20_03114 at 3270.414 kb on + strand, within MPMX20_03114 at 3270.414 kb on + strand, within MPMX20_03114 at 3270.422 kb on - strand, within MPMX20_03114 at 3270.422 kb on - strand, within MPMX20_03114 at 3270.438 kb on + strand, within MPMX20_03114 at 3270.648 kb on - strand at 3270.655 kb on + strand at 3270.740 kb on + strand at 3270.784 kb on - strand, within MPMX20_03115 at 3270.784 kb on - strand, within MPMX20_03115 at 3270.789 kb on - strand, within MPMX20_03115 at 3270.816 kb on + strand, within MPMX20_03115 at 3270.816 kb on + strand, within MPMX20_03115 at 3270.816 kb on + strand, within MPMX20_03115 at 3270.856 kb on - strand, within MPMX20_03115 at 3270.933 kb on - strand, within MPMX20_03115 at 3270.967 kb on + strand, within MPMX20_03115 at 3270.998 kb on - strand, within MPMX20_03115 at 3271.013 kb on - strand, within MPMX20_03115 at 3271.075 kb on + strand, within MPMX20_03115 at 3271.100 kb on - strand, within MPMX20_03115 at 3271.148 kb on - strand, within MPMX20_03115 at 3271.243 kb on + strand, within MPMX20_03115 at 3271.281 kb on - strand, within MPMX20_03115 at 3271.283 kb on + strand, within MPMX20_03115 at 3271.301 kb on - strand, within MPMX20_03115 at 3271.330 kb on + strand, within MPMX20_03115 at 3271.370 kb on - strand, within MPMX20_03115 at 3271.398 kb on + strand, within MPMX20_03115 at 3271.406 kb on - strand, within MPMX20_03115 at 3271.431 kb on + strand, within MPMX20_03115 at 3271.431 kb on - strand, within MPMX20_03115 at 3271.439 kb on - strand, within MPMX20_03115
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, Mixed culture; Bacillus zanthoxyli TBS_056 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 3,268,857 - MPMX20_03112 0.56 -0.3 3,268,857 - MPMX20_03112 0.56 +0.1 3,268,857 - MPMX20_03112 0.56 +0.2 3,268,857 - MPMX20_03112 0.56 +0.0 3,268,857 - MPMX20_03112 0.56 -1.3 3,268,857 - MPMX20_03112 0.56 -1.9 3,268,881 + MPMX20_03112 0.59 -1.0 3,268,905 + MPMX20_03112 0.61 -0.4 3,268,913 - MPMX20_03112 0.62 -0.2 3,268,913 - MPMX20_03112 0.62 -2.3 3,268,990 - MPMX20_03112 0.70 -0.7 3,269,001 + MPMX20_03112 0.71 -0.8 3,269,008 + MPMX20_03112 0.72 -1.3 3,269,081 + MPMX20_03112 0.80 -1.5 3,269,096 + MPMX20_03112 0.82 -0.4 3,269,096 + MPMX20_03112 0.82 +0.9 3,269,110 + MPMX20_03112 0.83 -0.4 3,269,221 + -0.3 3,269,246 - -0.1 3,269,250 - +2.6 3,269,323 + -0.2 3,269,324 - +0.2 3,269,349 + +1.9 3,269,351 - +0.4 3,269,352 - +1.9 3,269,371 + +0.3 3,269,379 - +0.3 3,269,494 - +0.6 3,269,501 + MPMX20_03113 0.10 -0.6 3,269,511 + MPMX20_03113 0.13 +0.3 3,269,511 + MPMX20_03113 0.13 -1.3 3,269,581 + MPMX20_03113 0.30 -0.9 3,269,637 + MPMX20_03113 0.44 -0.4 3,269,637 + MPMX20_03113 0.44 -0.4 3,269,645 - MPMX20_03113 0.46 +1.5 3,269,645 - MPMX20_03113 0.46 -1.5 3,269,645 - MPMX20_03113 0.46 +1.3 3,269,645 - MPMX20_03113 0.46 -2.1 3,269,645 - MPMX20_03113 0.46 +0.5 3,269,650 - MPMX20_03113 0.47 -0.7 3,269,651 + MPMX20_03113 0.48 -0.1 3,269,659 - MPMX20_03113 0.50 +0.6 3,269,696 + MPMX20_03113 0.59 -0.4 3,269,704 - MPMX20_03113 0.61 +0.6 3,269,704 - MPMX20_03113 0.61 -1.9 3,269,766 - MPMX20_03113 0.76 +0.3 3,269,900 + +1.2 3,269,908 - -2.1 3,269,908 - -1.0 3,269,978 - MPMX20_03114 0.18 -0.8 3,270,077 - MPMX20_03114 0.32 +3.8 3,270,188 + MPMX20_03114 0.48 -1.9 3,270,188 + MPMX20_03114 0.48 +0.1 3,270,191 - MPMX20_03114 0.48 +4.0 3,270,196 - MPMX20_03114 0.49 -0.6 3,270,235 - MPMX20_03114 0.54 +0.6 3,270,283 - MPMX20_03114 0.61 +1.5 3,270,379 - MPMX20_03114 0.75 +0.6 3,270,414 + MPMX20_03114 0.80 -0.0 3,270,414 + MPMX20_03114 0.80 +0.1 3,270,422 - MPMX20_03114 0.81 -0.4 3,270,422 - MPMX20_03114 0.81 -0.5 3,270,438 + MPMX20_03114 0.84 -1.4 3,270,648 - +0.1 3,270,655 + +0.9 3,270,740 + +0.2 3,270,784 - MPMX20_03115 0.12 -1.1 3,270,784 - MPMX20_03115 0.12 -1.1 3,270,789 - MPMX20_03115 0.12 -0.6 3,270,816 + MPMX20_03115 0.15 -1.2 3,270,816 + MPMX20_03115 0.15 -1.0 3,270,816 + MPMX20_03115 0.15 -1.8 3,270,856 - MPMX20_03115 0.20 -0.8 3,270,933 - MPMX20_03115 0.28 -1.3 3,270,967 + MPMX20_03115 0.32 -0.1 3,270,998 - MPMX20_03115 0.36 -0.4 3,271,013 - MPMX20_03115 0.38 +0.3 3,271,075 + MPMX20_03115 0.45 +0.3 3,271,100 - MPMX20_03115 0.47 -1.1 3,271,148 - MPMX20_03115 0.53 -2.5 3,271,243 + MPMX20_03115 0.64 +1.3 3,271,281 - MPMX20_03115 0.68 -0.1 3,271,283 + MPMX20_03115 0.68 -0.7 3,271,301 - MPMX20_03115 0.70 -0.1 3,271,330 + MPMX20_03115 0.73 -0.3 3,271,370 - MPMX20_03115 0.78 -2.5 3,271,398 + MPMX20_03115 0.81 -2.1 3,271,406 - MPMX20_03115 0.82 +1.1 3,271,431 + MPMX20_03115 0.85 +0.8 3,271,431 - MPMX20_03115 0.85 -0.1 3,271,439 - MPMX20_03115 0.86 -1.1
Or see this region's nucleotide sequence