Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03073

Experiment: TSB plate, Mixed culture; Bacillus zanthoxyli TBS_056 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03072 and MPMX20_03073 overlap by 4 nucleotidesMPMX20_03073 and MPMX20_03074 overlap by 4 nucleotidesMPMX20_03074 and MPMX20_03075 overlap by 27 nucleotides MPMX20_03072: MPMX20_03072 - Putative nucleoside transporter YegT, at 3,222,036 to 3,223,313 _03072 MPMX20_03073: MPMX20_03073 - hypothetical protein, at 3,223,310 to 3,224,314 _03073 MPMX20_03074: MPMX20_03074 - Ribokinase, at 3,224,311 to 3,225,264 _03074 MPMX20_03075: MPMX20_03075 - HTH-type transcriptional repressor NagR, at 3,225,238 to 3,225,984 _03075 Position (kb) 3223 3224 3225Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7 8at 3222.354 kb on - strand, within MPMX20_03072at 3222.354 kb on - strand, within MPMX20_03072at 3222.358 kb on + strand, within MPMX20_03072at 3222.358 kb on + strand, within MPMX20_03072at 3222.366 kb on - strand, within MPMX20_03072at 3222.384 kb on - strand, within MPMX20_03072at 3222.439 kb on + strand, within MPMX20_03072at 3222.454 kb on + strand, within MPMX20_03072at 3222.459 kb on + strand, within MPMX20_03072at 3222.464 kb on + strand, within MPMX20_03072at 3222.467 kb on - strand, within MPMX20_03072at 3222.544 kb on + strand, within MPMX20_03072at 3222.544 kb on + strand, within MPMX20_03072at 3222.552 kb on - strand, within MPMX20_03072at 3222.552 kb on - strand, within MPMX20_03072at 3222.552 kb on - strand, within MPMX20_03072at 3222.552 kb on - strand, within MPMX20_03072at 3222.552 kb on - strand, within MPMX20_03072at 3222.586 kb on - strand, within MPMX20_03072at 3222.631 kb on + strand, within MPMX20_03072at 3222.639 kb on - strand, within MPMX20_03072at 3222.644 kb on + strand, within MPMX20_03072at 3222.685 kb on + strand, within MPMX20_03072at 3222.705 kb on + strand, within MPMX20_03072at 3222.789 kb on - strand, within MPMX20_03072at 3222.789 kb on - strand, within MPMX20_03072at 3222.872 kb on + strand, within MPMX20_03072at 3222.918 kb on + strand, within MPMX20_03072at 3222.936 kb on + strand, within MPMX20_03072at 3222.952 kb on - strand, within MPMX20_03072at 3222.996 kb on + strand, within MPMX20_03072at 3223.004 kb on - strand, within MPMX20_03072at 3223.008 kb on - strand, within MPMX20_03072at 3223.034 kb on - strand, within MPMX20_03072at 3223.053 kb on - strand, within MPMX20_03072at 3223.076 kb on - strand, within MPMX20_03072at 3223.085 kb on + strand, within MPMX20_03072at 3223.085 kb on + strand, within MPMX20_03072at 3223.093 kb on + strand, within MPMX20_03072at 3223.093 kb on - strand, within MPMX20_03072at 3223.132 kb on + strand, within MPMX20_03072at 3223.158 kb on + strand, within MPMX20_03072at 3223.158 kb on + strand, within MPMX20_03072at 3223.158 kb on + strand, within MPMX20_03072at 3223.158 kb on + strand, within MPMX20_03072at 3223.166 kb on - strand, within MPMX20_03072at 3223.166 kb on - strand, within MPMX20_03072at 3223.199 kb on - strandat 3223.271 kb on + strandat 3223.272 kb on + strandat 3223.279 kb on - strandat 3223.342 kb on - strandat 3223.349 kb on + strandat 3223.349 kb on + strandat 3223.349 kb on + strandat 3223.349 kb on + strandat 3223.349 kb on + strandat 3223.349 kb on + strandat 3223.357 kb on - strandat 3223.357 kb on - strandat 3223.357 kb on - strandat 3223.357 kb on - strandat 3223.357 kb on - strandat 3223.357 kb on - strandat 3223.374 kb on + strandat 3223.374 kb on + strandat 3223.453 kb on - strand, within MPMX20_03073at 3223.492 kb on + strand, within MPMX20_03073at 3223.505 kb on - strand, within MPMX20_03073at 3223.574 kb on + strand, within MPMX20_03073at 3223.577 kb on - strand, within MPMX20_03073at 3223.579 kb on + strand, within MPMX20_03073at 3223.582 kb on - strand, within MPMX20_03073at 3223.584 kb on + strand, within MPMX20_03073at 3223.584 kb on + strand, within MPMX20_03073at 3223.584 kb on + strand, within MPMX20_03073at 3223.584 kb on + strand, within MPMX20_03073at 3223.592 kb on - strand, within MPMX20_03073at 3223.592 kb on - strand, within MPMX20_03073at 3223.719 kb on + strand, within MPMX20_03073at 3223.719 kb on + strand, within MPMX20_03073at 3223.727 kb on - strand, within MPMX20_03073at 3223.738 kb on + strand, within MPMX20_03073at 3223.742 kb on - strand, within MPMX20_03073at 3223.773 kb on + strand, within MPMX20_03073at 3223.785 kb on + strand, within MPMX20_03073at 3223.842 kb on + strand, within MPMX20_03073at 3223.842 kb on + strand, within MPMX20_03073at 3223.845 kb on - strand, within MPMX20_03073at 3223.845 kb on - strand, within MPMX20_03073at 3223.855 kb on - strand, within MPMX20_03073at 3223.897 kb on + strand, within MPMX20_03073at 3223.902 kb on + strand, within MPMX20_03073at 3223.902 kb on + strand, within MPMX20_03073at 3223.922 kb on - strand, within MPMX20_03073at 3223.939 kb on + strand, within MPMX20_03073at 3223.947 kb on - strand, within MPMX20_03073at 3224.063 kb on - strand, within MPMX20_03073at 3224.108 kb on - strand, within MPMX20_03073at 3224.184 kb on + strand, within MPMX20_03073at 3224.197 kb on - strand, within MPMX20_03073at 3224.207 kb on - strand, within MPMX20_03073at 3224.241 kb on + strandat 3224.258 kb on - strandat 3224.307 kb on + strandat 3224.339 kb on - strandat 3224.339 kb on - strandat 3224.339 kb on - strandat 3224.339 kb on - strandat 3224.339 kb on - strandat 3224.365 kb on + strandat 3224.367 kb on + strandat 3224.375 kb on - strandat 3224.402 kb on + strandat 3224.402 kb on + strandat 3224.402 kb on + strandat 3224.402 kb on + strandat 3224.410 kb on - strand, within MPMX20_03074at 3224.410 kb on - strand, within MPMX20_03074at 3224.410 kb on - strand, within MPMX20_03074at 3224.410 kb on - strand, within MPMX20_03074at 3224.412 kb on + strand, within MPMX20_03074at 3224.412 kb on + strand, within MPMX20_03074at 3224.542 kb on - strand, within MPMX20_03074at 3224.554 kb on - strand, within MPMX20_03074at 3224.589 kb on - strand, within MPMX20_03074at 3224.589 kb on - strand, within MPMX20_03074at 3224.627 kb on + strand, within MPMX20_03074at 3224.660 kb on + strand, within MPMX20_03074at 3224.660 kb on + strand, within MPMX20_03074at 3224.668 kb on - strand, within MPMX20_03074at 3224.705 kb on + strand, within MPMX20_03074at 3224.713 kb on - strand, within MPMX20_03074at 3224.772 kb on - strand, within MPMX20_03074at 3224.789 kb on - strand, within MPMX20_03074at 3224.831 kb on + strand, within MPMX20_03074at 3224.831 kb on + strand, within MPMX20_03074at 3224.885 kb on - strand, within MPMX20_03074at 3224.983 kb on - strand, within MPMX20_03074at 3225.026 kb on - strand, within MPMX20_03074at 3225.033 kb on + strand, within MPMX20_03074at 3225.041 kb on - strand, within MPMX20_03074at 3225.041 kb on - strand, within MPMX20_03074at 3225.100 kb on + strand, within MPMX20_03074at 3225.161 kb on + strand, within MPMX20_03074at 3225.169 kb on - strandat 3225.235 kb on + strandat 3225.235 kb on + strandat 3225.235 kb on + strandat 3225.235 kb on + strandat 3225.243 kb on - strandat 3225.258 kb on - strandat 3225.274 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, Mixed culture; Bacillus zanthoxyli TBS_056 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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3,222,354 - MPMX20_03072 0.25 -1.6
3,222,354 - MPMX20_03072 0.25 -1.6
3,222,358 + MPMX20_03072 0.25 +0.2
3,222,358 + MPMX20_03072 0.25 -0.1
3,222,366 - MPMX20_03072 0.26 -0.8
3,222,384 - MPMX20_03072 0.27 +1.3
3,222,439 + MPMX20_03072 0.32 -0.7
3,222,454 + MPMX20_03072 0.33 -0.3
3,222,459 + MPMX20_03072 0.33 -3.6
3,222,464 + MPMX20_03072 0.33 +0.5
3,222,467 - MPMX20_03072 0.34 +0.6
3,222,544 + MPMX20_03072 0.40 -0.5
3,222,544 + MPMX20_03072 0.40 +1.1
3,222,552 - MPMX20_03072 0.40 -0.1
3,222,552 - MPMX20_03072 0.40 -0.1
3,222,552 - MPMX20_03072 0.40 -0.7
3,222,552 - MPMX20_03072 0.40 -1.3
3,222,552 - MPMX20_03072 0.40 -1.0
3,222,586 - MPMX20_03072 0.43 -0.8
3,222,631 + MPMX20_03072 0.47 -2.3
3,222,639 - MPMX20_03072 0.47 -0.9
3,222,644 + MPMX20_03072 0.48 -0.5
3,222,685 + MPMX20_03072 0.51 +0.7
3,222,705 + MPMX20_03072 0.52 -0.5
3,222,789 - MPMX20_03072 0.59 -0.8
3,222,789 - MPMX20_03072 0.59 -0.6
3,222,872 + MPMX20_03072 0.65 -0.3
3,222,918 + MPMX20_03072 0.69 -3.1
3,222,936 + MPMX20_03072 0.70 -3.4
3,222,952 - MPMX20_03072 0.72 -0.3
3,222,996 + MPMX20_03072 0.75 +1.1
3,223,004 - MPMX20_03072 0.76 -1.6
3,223,008 - MPMX20_03072 0.76 +0.5
3,223,034 - MPMX20_03072 0.78 -1.2
3,223,053 - MPMX20_03072 0.80 -1.1
3,223,076 - MPMX20_03072 0.81 -0.9
3,223,085 + MPMX20_03072 0.82 -1.1
3,223,085 + MPMX20_03072 0.82 -0.8
3,223,093 + MPMX20_03072 0.83 -1.1
3,223,093 - MPMX20_03072 0.83 -0.8
3,223,132 + MPMX20_03072 0.86 +0.9
3,223,158 + MPMX20_03072 0.88 -1.6
3,223,158 + MPMX20_03072 0.88 -1.1
3,223,158 + MPMX20_03072 0.88 -1.6
3,223,158 + MPMX20_03072 0.88 -2.3
3,223,166 - MPMX20_03072 0.88 +1.3
3,223,166 - MPMX20_03072 0.88 -0.7
3,223,199 - -2.5
3,223,271 + -1.6
3,223,272 + -1.7
3,223,279 - -0.2
3,223,342 - -0.7
3,223,349 + -0.1
3,223,349 + -2.1
3,223,349 + -1.3
3,223,349 + +0.8
3,223,349 + -1.1
3,223,349 + -1.0
3,223,357 - -0.5
3,223,357 - -1.6
3,223,357 - -0.7
3,223,357 - +1.9
3,223,357 - +0.4
3,223,357 - -1.1
3,223,374 + -1.5
3,223,374 + -0.4
3,223,453 - MPMX20_03073 0.14 +4.2
3,223,492 + MPMX20_03073 0.18 -1.5
3,223,505 - MPMX20_03073 0.19 -1.3
3,223,574 + MPMX20_03073 0.26 +3.4
3,223,577 - MPMX20_03073 0.27 +1.3
3,223,579 + MPMX20_03073 0.27 +0.9
3,223,582 - MPMX20_03073 0.27 -1.2
3,223,584 + MPMX20_03073 0.27 +0.3
3,223,584 + MPMX20_03073 0.27 +3.9
3,223,584 + MPMX20_03073 0.27 -0.6
3,223,584 + MPMX20_03073 0.27 +1.2
3,223,592 - MPMX20_03073 0.28 +0.7
3,223,592 - MPMX20_03073 0.28 +1.4
3,223,719 + MPMX20_03073 0.41 -1.1
3,223,719 + MPMX20_03073 0.41 -1.3
3,223,727 - MPMX20_03073 0.41 +0.5
3,223,738 + MPMX20_03073 0.43 +1.3
3,223,742 - MPMX20_03073 0.43 -0.5
3,223,773 + MPMX20_03073 0.46 -1.8
3,223,785 + MPMX20_03073 0.47 -0.5
3,223,842 + MPMX20_03073 0.53 -0.1
3,223,842 + MPMX20_03073 0.53 -0.8
3,223,845 - MPMX20_03073 0.53 -0.1
3,223,845 - MPMX20_03073 0.53 -0.3
3,223,855 - MPMX20_03073 0.54 -0.3
3,223,897 + MPMX20_03073 0.58 +0.7
3,223,902 + MPMX20_03073 0.59 +0.7
3,223,902 + MPMX20_03073 0.59 +2.9
3,223,922 - MPMX20_03073 0.61 -1.9
3,223,939 + MPMX20_03073 0.63 -2.5
3,223,947 - MPMX20_03073 0.63 -0.4
3,224,063 - MPMX20_03073 0.75 +0.2
3,224,108 - MPMX20_03073 0.79 +2.9
3,224,184 + MPMX20_03073 0.87 -0.6
3,224,197 - MPMX20_03073 0.88 -0.1
3,224,207 - MPMX20_03073 0.89 +1.6
3,224,241 + -0.3
3,224,258 - -1.3
3,224,307 + +1.0
3,224,339 - -0.6
3,224,339 - +1.0
3,224,339 - -1.1
3,224,339 - -0.5
3,224,339 - +8.0
3,224,365 + -1.6
3,224,367 + -0.1
3,224,375 - -0.5
3,224,402 + -0.7
3,224,402 + -1.2
3,224,402 + -0.3
3,224,402 + -1.3
3,224,410 - MPMX20_03074 0.10 -0.8
3,224,410 - MPMX20_03074 0.10 -0.8
3,224,410 - MPMX20_03074 0.10 -0.9
3,224,410 - MPMX20_03074 0.10 +0.9
3,224,412 + MPMX20_03074 0.11 +0.4
3,224,412 + MPMX20_03074 0.11 -1.3
3,224,542 - MPMX20_03074 0.24 +0.8
3,224,554 - MPMX20_03074 0.25 -1.9
3,224,589 - MPMX20_03074 0.29 -1.4
3,224,589 - MPMX20_03074 0.29 -0.3
3,224,627 + MPMX20_03074 0.33 +0.9
3,224,660 + MPMX20_03074 0.37 -0.5
3,224,660 + MPMX20_03074 0.37 +2.9
3,224,668 - MPMX20_03074 0.37 -1.0
3,224,705 + MPMX20_03074 0.41 -1.0
3,224,713 - MPMX20_03074 0.42 -1.1
3,224,772 - MPMX20_03074 0.48 -1.3
3,224,789 - MPMX20_03074 0.50 -0.8
3,224,831 + MPMX20_03074 0.55 +0.5
3,224,831 + MPMX20_03074 0.55 -1.0
3,224,885 - MPMX20_03074 0.60 -0.0
3,224,983 - MPMX20_03074 0.70 +1.9
3,225,026 - MPMX20_03074 0.75 -1.2
3,225,033 + MPMX20_03074 0.76 -0.2
3,225,041 - MPMX20_03074 0.77 +0.2
3,225,041 - MPMX20_03074 0.77 +0.2
3,225,100 + MPMX20_03074 0.83 +0.0
3,225,161 + MPMX20_03074 0.89 +0.2
3,225,169 - -2.3
3,225,235 + -1.4
3,225,235 + -2.5
3,225,235 + -2.1
3,225,235 + +0.1
3,225,243 - +2.3
3,225,258 - -0.7
3,225,274 + -1.6

Or see this region's nucleotide sequence