Experiment: TSB plate, Mixed culture; Bacillus zanthoxyli TBS_056 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02625 and MPMX20_02626 are separated by 72 nucleotides MPMX20_02626 and MPMX20_02627 are separated by 106 nucleotides
MPMX20_02625: MPMX20_02625 - Nitrate regulatory protein, at 2,769,836 to 2,771,020
_02625
MPMX20_02626: MPMX20_02626 - Protein YchN, at 2,771,093 to 2,771,446
_02626
MPMX20_02627: MPMX20_02627 - Methyl-accepting chemotaxis protein PctC, at 2,771,553 to 2,773,337
_02627
Position (kb)
2771
2772 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2770.132 kb on + strand, within MPMX20_02625 at 2770.173 kb on - strand, within MPMX20_02625 at 2770.210 kb on + strand, within MPMX20_02625 at 2770.210 kb on + strand, within MPMX20_02625 at 2770.210 kb on + strand, within MPMX20_02625 at 2770.218 kb on + strand, within MPMX20_02625 at 2770.218 kb on - strand, within MPMX20_02625 at 2770.254 kb on + strand, within MPMX20_02625 at 2770.262 kb on - strand, within MPMX20_02625 at 2770.262 kb on - strand, within MPMX20_02625 at 2770.262 kb on - strand, within MPMX20_02625 at 2770.262 kb on - strand, within MPMX20_02625 at 2770.272 kb on - strand, within MPMX20_02625 at 2770.324 kb on - strand, within MPMX20_02625 at 2770.387 kb on - strand, within MPMX20_02625 at 2770.406 kb on + strand, within MPMX20_02625 at 2770.599 kb on - strand, within MPMX20_02625 at 2770.633 kb on - strand, within MPMX20_02625 at 2770.683 kb on + strand, within MPMX20_02625 at 2770.723 kb on - strand, within MPMX20_02625 at 2770.739 kb on + strand, within MPMX20_02625 at 2770.747 kb on - strand, within MPMX20_02625 at 2770.747 kb on - strand, within MPMX20_02625 at 2770.785 kb on - strand, within MPMX20_02625 at 2770.791 kb on + strand, within MPMX20_02625 at 2770.825 kb on - strand, within MPMX20_02625 at 2770.835 kb on - strand, within MPMX20_02625 at 2770.835 kb on - strand, within MPMX20_02625 at 2770.835 kb on - strand, within MPMX20_02625 at 2770.840 kb on + strand, within MPMX20_02625 at 2770.841 kb on - strand, within MPMX20_02625 at 2770.841 kb on - strand, within MPMX20_02625 at 2770.848 kb on - strand, within MPMX20_02625 at 2770.865 kb on + strand, within MPMX20_02625 at 2770.900 kb on + strand, within MPMX20_02625 at 2770.908 kb on + strand at 2770.916 kb on - strand at 2770.916 kb on - strand at 2770.916 kb on - strand at 2770.935 kb on + strand at 2770.938 kb on - strand at 2770.938 kb on - strand at 2770.943 kb on + strand at 2770.971 kb on + strand at 2770.971 kb on + strand at 2770.979 kb on - strand at 2771.028 kb on + strand at 2771.028 kb on + strand at 2771.126 kb on + strand at 2771.167 kb on - strand, within MPMX20_02626 at 2771.232 kb on + strand, within MPMX20_02626 at 2771.240 kb on - strand, within MPMX20_02626 at 2771.323 kb on + strand, within MPMX20_02626 at 2771.323 kb on + strand, within MPMX20_02626 at 2771.368 kb on + strand, within MPMX20_02626 at 2771.412 kb on - strand at 2771.511 kb on - strand at 2771.595 kb on + strand at 2771.657 kb on - strand at 2771.687 kb on - strand at 2771.753 kb on - strand, within MPMX20_02627 at 2771.813 kb on + strand, within MPMX20_02627 at 2771.893 kb on + strand, within MPMX20_02627 at 2771.942 kb on - strand, within MPMX20_02627 at 2771.947 kb on - strand, within MPMX20_02627 at 2771.956 kb on - strand, within MPMX20_02627 at 2772.029 kb on + strand, within MPMX20_02627 at 2772.057 kb on + strand, within MPMX20_02627 at 2772.065 kb on - strand, within MPMX20_02627 at 2772.075 kb on - strand, within MPMX20_02627 at 2772.157 kb on + strand, within MPMX20_02627 at 2772.169 kb on + strand, within MPMX20_02627 at 2772.177 kb on - strand, within MPMX20_02627 at 2772.199 kb on - strand, within MPMX20_02627 at 2772.317 kb on + strand, within MPMX20_02627 at 2772.320 kb on - strand, within MPMX20_02627 at 2772.320 kb on - strand, within MPMX20_02627 at 2772.389 kb on - strand, within MPMX20_02627 at 2772.395 kb on - strand, within MPMX20_02627 at 2772.431 kb on + strand, within MPMX20_02627
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, Mixed culture; Bacillus zanthoxyli TBS_056 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 2,770,132 + MPMX20_02625 0.25 +0.6 2,770,173 - MPMX20_02625 0.28 -0.7 2,770,210 + MPMX20_02625 0.32 -0.0 2,770,210 + MPMX20_02625 0.32 -0.2 2,770,210 + MPMX20_02625 0.32 -1.0 2,770,218 + MPMX20_02625 0.32 +0.6 2,770,218 - MPMX20_02625 0.32 -0.2 2,770,254 + MPMX20_02625 0.35 -0.3 2,770,262 - MPMX20_02625 0.36 -0.3 2,770,262 - MPMX20_02625 0.36 +0.6 2,770,262 - MPMX20_02625 0.36 -1.1 2,770,262 - MPMX20_02625 0.36 +1.3 2,770,272 - MPMX20_02625 0.37 -1.6 2,770,324 - MPMX20_02625 0.41 +0.3 2,770,387 - MPMX20_02625 0.46 -1.6 2,770,406 + MPMX20_02625 0.48 -1.2 2,770,599 - MPMX20_02625 0.64 -0.8 2,770,633 - MPMX20_02625 0.67 -0.8 2,770,683 + MPMX20_02625 0.71 -0.1 2,770,723 - MPMX20_02625 0.75 +0.9 2,770,739 + MPMX20_02625 0.76 -0.2 2,770,747 - MPMX20_02625 0.77 -2.0 2,770,747 - MPMX20_02625 0.77 +0.3 2,770,785 - MPMX20_02625 0.80 -0.1 2,770,791 + MPMX20_02625 0.81 -0.8 2,770,825 - MPMX20_02625 0.83 -0.6 2,770,835 - MPMX20_02625 0.84 +0.3 2,770,835 - MPMX20_02625 0.84 -0.9 2,770,835 - MPMX20_02625 0.84 -1.7 2,770,840 + MPMX20_02625 0.85 +1.9 2,770,841 - MPMX20_02625 0.85 -1.6 2,770,841 - MPMX20_02625 0.85 +0.7 2,770,848 - MPMX20_02625 0.85 +0.7 2,770,865 + MPMX20_02625 0.87 -1.0 2,770,900 + MPMX20_02625 0.90 +1.3 2,770,908 + -0.0 2,770,916 - -0.7 2,770,916 - -0.1 2,770,916 - +0.5 2,770,935 + -0.4 2,770,938 - +0.2 2,770,938 - -0.9 2,770,943 + -1.2 2,770,971 + -1.9 2,770,971 + +0.3 2,770,979 - -0.3 2,771,028 + -0.6 2,771,028 + +1.3 2,771,126 + -0.5 2,771,167 - MPMX20_02626 0.21 -1.0 2,771,232 + MPMX20_02626 0.39 -2.4 2,771,240 - MPMX20_02626 0.42 +0.3 2,771,323 + MPMX20_02626 0.65 -0.6 2,771,323 + MPMX20_02626 0.65 +0.6 2,771,368 + MPMX20_02626 0.78 -2.3 2,771,412 - -0.1 2,771,511 - +0.1 2,771,595 + -0.6 2,771,657 - -0.8 2,771,687 - -1.1 2,771,753 - MPMX20_02627 0.11 -0.3 2,771,813 + MPMX20_02627 0.15 +0.9 2,771,893 + MPMX20_02627 0.19 +0.1 2,771,942 - MPMX20_02627 0.22 +2.4 2,771,947 - MPMX20_02627 0.22 -0.6 2,771,956 - MPMX20_02627 0.23 -1.4 2,772,029 + MPMX20_02627 0.27 +0.1 2,772,057 + MPMX20_02627 0.28 +0.1 2,772,065 - MPMX20_02627 0.29 +0.6 2,772,075 - MPMX20_02627 0.29 -0.7 2,772,157 + MPMX20_02627 0.34 +0.7 2,772,169 + MPMX20_02627 0.35 -1.5 2,772,177 - MPMX20_02627 0.35 -0.9 2,772,199 - MPMX20_02627 0.36 -0.3 2,772,317 + MPMX20_02627 0.43 -1.6 2,772,320 - MPMX20_02627 0.43 -0.8 2,772,320 - MPMX20_02627 0.43 -1.5 2,772,389 - MPMX20_02627 0.47 -0.5 2,772,395 - MPMX20_02627 0.47 -2.2 2,772,431 + MPMX20_02627 0.49 +0.3
Or see this region's nucleotide sequence