Experiment: TSB plate, Mixed culture; Bacillus zanthoxyli TBS_056 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02043 and MPMX20_02044 are separated by 233 nucleotides MPMX20_02044 and MPMX20_02045 overlap by 17 nucleotides
MPMX20_02043: MPMX20_02043 - Pyridoxine 4-dehydrogenase, at 2,137,155 to 2,138,021
_02043
MPMX20_02044: MPMX20_02044 - Protein UmuD, at 2,138,255 to 2,138,689
_02044
MPMX20_02045: MPMX20_02045 - Protein UmuC, at 2,138,673 to 2,139,935
_02045
Position (kb)
2138
2139 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2137.258 kb on + strand, within MPMX20_02043 at 2137.418 kb on + strand, within MPMX20_02043 at 2137.470 kb on - strand, within MPMX20_02043 at 2137.488 kb on + strand, within MPMX20_02043 at 2137.488 kb on + strand, within MPMX20_02043 at 2137.492 kb on + strand, within MPMX20_02043 at 2137.496 kb on - strand, within MPMX20_02043 at 2137.496 kb on - strand, within MPMX20_02043 at 2137.531 kb on + strand, within MPMX20_02043 at 2137.539 kb on - strand, within MPMX20_02043 at 2137.564 kb on + strand, within MPMX20_02043 at 2137.569 kb on + strand, within MPMX20_02043 at 2137.572 kb on - strand, within MPMX20_02043 at 2137.609 kb on + strand, within MPMX20_02043 at 2137.636 kb on + strand, within MPMX20_02043 at 2137.644 kb on - strand, within MPMX20_02043 at 2137.646 kb on + strand, within MPMX20_02043 at 2137.649 kb on - strand, within MPMX20_02043 at 2137.649 kb on - strand, within MPMX20_02043 at 2137.667 kb on + strand, within MPMX20_02043 at 2137.688 kb on + strand, within MPMX20_02043 at 2137.689 kb on + strand, within MPMX20_02043 at 2137.694 kb on + strand, within MPMX20_02043 at 2137.712 kb on - strand, within MPMX20_02043 at 2137.812 kb on + strand, within MPMX20_02043 at 2137.897 kb on + strand, within MPMX20_02043 at 2137.935 kb on - strand at 2137.999 kb on + strand at 2138.030 kb on + strand at 2138.037 kb on + strand at 2138.050 kb on - strand at 2138.104 kb on - strand at 2138.129 kb on + strand at 2138.137 kb on - strand at 2138.157 kb on + strand at 2138.173 kb on - strand at 2138.188 kb on - strand at 2138.355 kb on - strand, within MPMX20_02044 at 2138.355 kb on - strand, within MPMX20_02044 at 2138.427 kb on - strand, within MPMX20_02044 at 2138.548 kb on + strand, within MPMX20_02044 at 2138.557 kb on - strand, within MPMX20_02044 at 2138.564 kb on + strand, within MPMX20_02044 at 2138.564 kb on + strand, within MPMX20_02044 at 2138.564 kb on + strand, within MPMX20_02044 at 2138.564 kb on + strand, within MPMX20_02044 at 2138.564 kb on + strand, within MPMX20_02044 at 2138.564 kb on + strand, within MPMX20_02044 at 2138.572 kb on - strand, within MPMX20_02044 at 2138.572 kb on - strand, within MPMX20_02044 at 2138.572 kb on - strand, within MPMX20_02044 at 2138.572 kb on - strand, within MPMX20_02044 at 2138.579 kb on - strand, within MPMX20_02044 at 2138.642 kb on + strand, within MPMX20_02044 at 2138.684 kb on + strand at 2138.754 kb on - strand at 2138.800 kb on + strand, within MPMX20_02045 at 2138.800 kb on + strand, within MPMX20_02045 at 2138.808 kb on - strand, within MPMX20_02045 at 2138.878 kb on - strand, within MPMX20_02045 at 2138.936 kb on + strand, within MPMX20_02045 at 2138.941 kb on + strand, within MPMX20_02045 at 2139.016 kb on + strand, within MPMX20_02045 at 2139.073 kb on + strand, within MPMX20_02045 at 2139.075 kb on - strand, within MPMX20_02045 at 2139.116 kb on + strand, within MPMX20_02045 at 2139.192 kb on + strand, within MPMX20_02045 at 2139.213 kb on + strand, within MPMX20_02045 at 2139.218 kb on + strand, within MPMX20_02045 at 2139.287 kb on + strand, within MPMX20_02045 at 2139.295 kb on - strand, within MPMX20_02045 at 2139.338 kb on - strand, within MPMX20_02045 at 2139.338 kb on - strand, within MPMX20_02045 at 2139.338 kb on - strand, within MPMX20_02045 at 2139.365 kb on + strand, within MPMX20_02045 at 2139.370 kb on + strand, within MPMX20_02045 at 2139.378 kb on - strand, within MPMX20_02045 at 2139.378 kb on - strand, within MPMX20_02045 at 2139.424 kb on + strand, within MPMX20_02045 at 2139.424 kb on + strand, within MPMX20_02045 at 2139.424 kb on + strand, within MPMX20_02045 at 2139.436 kb on + strand, within MPMX20_02045 at 2139.436 kb on + strand, within MPMX20_02045 at 2139.436 kb on + strand, within MPMX20_02045 at 2139.454 kb on - strand, within MPMX20_02045 at 2139.466 kb on - strand, within MPMX20_02045 at 2139.467 kb on - strand, within MPMX20_02045 at 2139.478 kb on + strand, within MPMX20_02045 at 2139.481 kb on - strand, within MPMX20_02045 at 2139.533 kb on - strand, within MPMX20_02045 at 2139.539 kb on + strand, within MPMX20_02045 at 2139.614 kb on + strand, within MPMX20_02045 at 2139.649 kb on + strand, within MPMX20_02045 at 2139.679 kb on - strand, within MPMX20_02045
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, Mixed culture; Bacillus zanthoxyli TBS_056 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 2,137,258 + MPMX20_02043 0.12 -2.3 2,137,418 + MPMX20_02043 0.30 -1.6 2,137,470 - MPMX20_02043 0.36 +0.9 2,137,488 + MPMX20_02043 0.38 -0.7 2,137,488 + MPMX20_02043 0.38 +0.4 2,137,492 + MPMX20_02043 0.39 +2.9 2,137,496 - MPMX20_02043 0.39 -0.3 2,137,496 - MPMX20_02043 0.39 +0.6 2,137,531 + MPMX20_02043 0.43 -0.3 2,137,539 - MPMX20_02043 0.44 -0.4 2,137,564 + MPMX20_02043 0.47 -0.1 2,137,569 + MPMX20_02043 0.48 -1.0 2,137,572 - MPMX20_02043 0.48 -1.3 2,137,609 + MPMX20_02043 0.52 -1.6 2,137,636 + MPMX20_02043 0.55 -0.1 2,137,644 - MPMX20_02043 0.56 +0.9 2,137,646 + MPMX20_02043 0.57 -0.1 2,137,649 - MPMX20_02043 0.57 +0.1 2,137,649 - MPMX20_02043 0.57 +0.3 2,137,667 + MPMX20_02043 0.59 -1.4 2,137,688 + MPMX20_02043 0.61 -1.0 2,137,689 + MPMX20_02043 0.62 -0.4 2,137,694 + MPMX20_02043 0.62 -0.7 2,137,712 - MPMX20_02043 0.64 +0.9 2,137,812 + MPMX20_02043 0.76 -1.9 2,137,897 + MPMX20_02043 0.86 +0.1 2,137,935 - +0.2 2,137,999 + -0.5 2,138,030 + +3.9 2,138,037 + -0.6 2,138,050 - -1.9 2,138,104 - -0.8 2,138,129 + -0.7 2,138,137 - -0.2 2,138,157 + -1.9 2,138,173 - -0.9 2,138,188 - +0.1 2,138,355 - MPMX20_02044 0.23 -1.7 2,138,355 - MPMX20_02044 0.23 -0.9 2,138,427 - MPMX20_02044 0.40 +1.3 2,138,548 + MPMX20_02044 0.67 +1.9 2,138,557 - MPMX20_02044 0.69 -0.7 2,138,564 + MPMX20_02044 0.71 -1.6 2,138,564 + MPMX20_02044 0.71 -1.5 2,138,564 + MPMX20_02044 0.71 -0.3 2,138,564 + MPMX20_02044 0.71 -1.5 2,138,564 + MPMX20_02044 0.71 -0.8 2,138,564 + MPMX20_02044 0.71 -1.9 2,138,572 - MPMX20_02044 0.73 -2.3 2,138,572 - MPMX20_02044 0.73 -2.0 2,138,572 - MPMX20_02044 0.73 +0.3 2,138,572 - MPMX20_02044 0.73 +0.7 2,138,579 - MPMX20_02044 0.74 +0.6 2,138,642 + MPMX20_02044 0.89 -0.8 2,138,684 + -0.6 2,138,754 - -0.8 2,138,800 + MPMX20_02045 0.10 +0.7 2,138,800 + MPMX20_02045 0.10 +0.6 2,138,808 - MPMX20_02045 0.11 -2.8 2,138,878 - MPMX20_02045 0.16 +0.1 2,138,936 + MPMX20_02045 0.21 -0.9 2,138,941 + MPMX20_02045 0.21 -0.8 2,139,016 + MPMX20_02045 0.27 -0.5 2,139,073 + MPMX20_02045 0.32 -0.4 2,139,075 - MPMX20_02045 0.32 -0.3 2,139,116 + MPMX20_02045 0.35 -1.1 2,139,192 + MPMX20_02045 0.41 -0.1 2,139,213 + MPMX20_02045 0.43 +0.3 2,139,218 + MPMX20_02045 0.43 +0.3 2,139,287 + MPMX20_02045 0.49 +0.6 2,139,295 - MPMX20_02045 0.49 -0.8 2,139,338 - MPMX20_02045 0.53 -1.3 2,139,338 - MPMX20_02045 0.53 +2.9 2,139,338 - MPMX20_02045 0.53 +0.9 2,139,365 + MPMX20_02045 0.55 -1.1 2,139,370 + MPMX20_02045 0.55 -0.4 2,139,378 - MPMX20_02045 0.56 -0.6 2,139,378 - MPMX20_02045 0.56 +0.6 2,139,424 + MPMX20_02045 0.59 -1.2 2,139,424 + MPMX20_02045 0.59 -0.7 2,139,424 + MPMX20_02045 0.59 -0.9 2,139,436 + MPMX20_02045 0.60 +0.3 2,139,436 + MPMX20_02045 0.60 -0.4 2,139,436 + MPMX20_02045 0.60 +0.1 2,139,454 - MPMX20_02045 0.62 +0.1 2,139,466 - MPMX20_02045 0.63 -0.3 2,139,467 - MPMX20_02045 0.63 +1.0 2,139,478 + MPMX20_02045 0.64 -0.9 2,139,481 - MPMX20_02045 0.64 -1.9 2,139,533 - MPMX20_02045 0.68 +3.3 2,139,539 + MPMX20_02045 0.69 -0.4 2,139,614 + MPMX20_02045 0.75 -1.1 2,139,649 + MPMX20_02045 0.77 -0.6 2,139,679 - MPMX20_02045 0.80 +0.3
Or see this region's nucleotide sequence