Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02044

Experiment: TSB plate, Mixed culture; Bacillus zanthoxyli TBS_056 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_02043 and MPMX20_02044 are separated by 233 nucleotidesMPMX20_02044 and MPMX20_02045 overlap by 17 nucleotides MPMX20_02043: MPMX20_02043 - Pyridoxine 4-dehydrogenase, at 2,137,155 to 2,138,021 _02043 MPMX20_02044: MPMX20_02044 - Protein UmuD, at 2,138,255 to 2,138,689 _02044 MPMX20_02045: MPMX20_02045 - Protein UmuC, at 2,138,673 to 2,139,935 _02045 Position (kb) 2138 2139Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2137.258 kb on + strand, within MPMX20_02043at 2137.418 kb on + strand, within MPMX20_02043at 2137.470 kb on - strand, within MPMX20_02043at 2137.488 kb on + strand, within MPMX20_02043at 2137.488 kb on + strand, within MPMX20_02043at 2137.492 kb on + strand, within MPMX20_02043at 2137.496 kb on - strand, within MPMX20_02043at 2137.496 kb on - strand, within MPMX20_02043at 2137.531 kb on + strand, within MPMX20_02043at 2137.539 kb on - strand, within MPMX20_02043at 2137.564 kb on + strand, within MPMX20_02043at 2137.569 kb on + strand, within MPMX20_02043at 2137.572 kb on - strand, within MPMX20_02043at 2137.609 kb on + strand, within MPMX20_02043at 2137.636 kb on + strand, within MPMX20_02043at 2137.644 kb on - strand, within MPMX20_02043at 2137.646 kb on + strand, within MPMX20_02043at 2137.649 kb on - strand, within MPMX20_02043at 2137.649 kb on - strand, within MPMX20_02043at 2137.667 kb on + strand, within MPMX20_02043at 2137.688 kb on + strand, within MPMX20_02043at 2137.689 kb on + strand, within MPMX20_02043at 2137.694 kb on + strand, within MPMX20_02043at 2137.712 kb on - strand, within MPMX20_02043at 2137.812 kb on + strand, within MPMX20_02043at 2137.897 kb on + strand, within MPMX20_02043at 2137.935 kb on - strandat 2137.999 kb on + strandat 2138.030 kb on + strandat 2138.037 kb on + strandat 2138.050 kb on - strandat 2138.104 kb on - strandat 2138.129 kb on + strandat 2138.137 kb on - strandat 2138.157 kb on + strandat 2138.173 kb on - strandat 2138.188 kb on - strandat 2138.355 kb on - strand, within MPMX20_02044at 2138.355 kb on - strand, within MPMX20_02044at 2138.427 kb on - strand, within MPMX20_02044at 2138.548 kb on + strand, within MPMX20_02044at 2138.557 kb on - strand, within MPMX20_02044at 2138.564 kb on + strand, within MPMX20_02044at 2138.564 kb on + strand, within MPMX20_02044at 2138.564 kb on + strand, within MPMX20_02044at 2138.564 kb on + strand, within MPMX20_02044at 2138.564 kb on + strand, within MPMX20_02044at 2138.564 kb on + strand, within MPMX20_02044at 2138.572 kb on - strand, within MPMX20_02044at 2138.572 kb on - strand, within MPMX20_02044at 2138.572 kb on - strand, within MPMX20_02044at 2138.572 kb on - strand, within MPMX20_02044at 2138.579 kb on - strand, within MPMX20_02044at 2138.642 kb on + strand, within MPMX20_02044at 2138.684 kb on + strandat 2138.754 kb on - strandat 2138.800 kb on + strand, within MPMX20_02045at 2138.800 kb on + strand, within MPMX20_02045at 2138.808 kb on - strand, within MPMX20_02045at 2138.878 kb on - strand, within MPMX20_02045at 2138.936 kb on + strand, within MPMX20_02045at 2138.941 kb on + strand, within MPMX20_02045at 2139.016 kb on + strand, within MPMX20_02045at 2139.073 kb on + strand, within MPMX20_02045at 2139.075 kb on - strand, within MPMX20_02045at 2139.116 kb on + strand, within MPMX20_02045at 2139.192 kb on + strand, within MPMX20_02045at 2139.213 kb on + strand, within MPMX20_02045at 2139.218 kb on + strand, within MPMX20_02045at 2139.287 kb on + strand, within MPMX20_02045at 2139.295 kb on - strand, within MPMX20_02045at 2139.338 kb on - strand, within MPMX20_02045at 2139.338 kb on - strand, within MPMX20_02045at 2139.338 kb on - strand, within MPMX20_02045at 2139.365 kb on + strand, within MPMX20_02045at 2139.370 kb on + strand, within MPMX20_02045at 2139.378 kb on - strand, within MPMX20_02045at 2139.378 kb on - strand, within MPMX20_02045at 2139.424 kb on + strand, within MPMX20_02045at 2139.424 kb on + strand, within MPMX20_02045at 2139.424 kb on + strand, within MPMX20_02045at 2139.436 kb on + strand, within MPMX20_02045at 2139.436 kb on + strand, within MPMX20_02045at 2139.436 kb on + strand, within MPMX20_02045at 2139.454 kb on - strand, within MPMX20_02045at 2139.466 kb on - strand, within MPMX20_02045at 2139.467 kb on - strand, within MPMX20_02045at 2139.478 kb on + strand, within MPMX20_02045at 2139.481 kb on - strand, within MPMX20_02045at 2139.533 kb on - strand, within MPMX20_02045at 2139.539 kb on + strand, within MPMX20_02045at 2139.614 kb on + strand, within MPMX20_02045at 2139.649 kb on + strand, within MPMX20_02045at 2139.679 kb on - strand, within MPMX20_02045

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, Mixed culture; Bacillus zanthoxyli TBS_056 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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2,137,258 + MPMX20_02043 0.12 -2.3
2,137,418 + MPMX20_02043 0.30 -1.6
2,137,470 - MPMX20_02043 0.36 +0.9
2,137,488 + MPMX20_02043 0.38 -0.7
2,137,488 + MPMX20_02043 0.38 +0.4
2,137,492 + MPMX20_02043 0.39 +2.9
2,137,496 - MPMX20_02043 0.39 -0.3
2,137,496 - MPMX20_02043 0.39 +0.6
2,137,531 + MPMX20_02043 0.43 -0.3
2,137,539 - MPMX20_02043 0.44 -0.4
2,137,564 + MPMX20_02043 0.47 -0.1
2,137,569 + MPMX20_02043 0.48 -1.0
2,137,572 - MPMX20_02043 0.48 -1.3
2,137,609 + MPMX20_02043 0.52 -1.6
2,137,636 + MPMX20_02043 0.55 -0.1
2,137,644 - MPMX20_02043 0.56 +0.9
2,137,646 + MPMX20_02043 0.57 -0.1
2,137,649 - MPMX20_02043 0.57 +0.1
2,137,649 - MPMX20_02043 0.57 +0.3
2,137,667 + MPMX20_02043 0.59 -1.4
2,137,688 + MPMX20_02043 0.61 -1.0
2,137,689 + MPMX20_02043 0.62 -0.4
2,137,694 + MPMX20_02043 0.62 -0.7
2,137,712 - MPMX20_02043 0.64 +0.9
2,137,812 + MPMX20_02043 0.76 -1.9
2,137,897 + MPMX20_02043 0.86 +0.1
2,137,935 - +0.2
2,137,999 + -0.5
2,138,030 + +3.9
2,138,037 + -0.6
2,138,050 - -1.9
2,138,104 - -0.8
2,138,129 + -0.7
2,138,137 - -0.2
2,138,157 + -1.9
2,138,173 - -0.9
2,138,188 - +0.1
2,138,355 - MPMX20_02044 0.23 -1.7
2,138,355 - MPMX20_02044 0.23 -0.9
2,138,427 - MPMX20_02044 0.40 +1.3
2,138,548 + MPMX20_02044 0.67 +1.9
2,138,557 - MPMX20_02044 0.69 -0.7
2,138,564 + MPMX20_02044 0.71 -1.6
2,138,564 + MPMX20_02044 0.71 -1.5
2,138,564 + MPMX20_02044 0.71 -0.3
2,138,564 + MPMX20_02044 0.71 -1.5
2,138,564 + MPMX20_02044 0.71 -0.8
2,138,564 + MPMX20_02044 0.71 -1.9
2,138,572 - MPMX20_02044 0.73 -2.3
2,138,572 - MPMX20_02044 0.73 -2.0
2,138,572 - MPMX20_02044 0.73 +0.3
2,138,572 - MPMX20_02044 0.73 +0.7
2,138,579 - MPMX20_02044 0.74 +0.6
2,138,642 + MPMX20_02044 0.89 -0.8
2,138,684 + -0.6
2,138,754 - -0.8
2,138,800 + MPMX20_02045 0.10 +0.7
2,138,800 + MPMX20_02045 0.10 +0.6
2,138,808 - MPMX20_02045 0.11 -2.8
2,138,878 - MPMX20_02045 0.16 +0.1
2,138,936 + MPMX20_02045 0.21 -0.9
2,138,941 + MPMX20_02045 0.21 -0.8
2,139,016 + MPMX20_02045 0.27 -0.5
2,139,073 + MPMX20_02045 0.32 -0.4
2,139,075 - MPMX20_02045 0.32 -0.3
2,139,116 + MPMX20_02045 0.35 -1.1
2,139,192 + MPMX20_02045 0.41 -0.1
2,139,213 + MPMX20_02045 0.43 +0.3
2,139,218 + MPMX20_02045 0.43 +0.3
2,139,287 + MPMX20_02045 0.49 +0.6
2,139,295 - MPMX20_02045 0.49 -0.8
2,139,338 - MPMX20_02045 0.53 -1.3
2,139,338 - MPMX20_02045 0.53 +2.9
2,139,338 - MPMX20_02045 0.53 +0.9
2,139,365 + MPMX20_02045 0.55 -1.1
2,139,370 + MPMX20_02045 0.55 -0.4
2,139,378 - MPMX20_02045 0.56 -0.6
2,139,378 - MPMX20_02045 0.56 +0.6
2,139,424 + MPMX20_02045 0.59 -1.2
2,139,424 + MPMX20_02045 0.59 -0.7
2,139,424 + MPMX20_02045 0.59 -0.9
2,139,436 + MPMX20_02045 0.60 +0.3
2,139,436 + MPMX20_02045 0.60 -0.4
2,139,436 + MPMX20_02045 0.60 +0.1
2,139,454 - MPMX20_02045 0.62 +0.1
2,139,466 - MPMX20_02045 0.63 -0.3
2,139,467 - MPMX20_02045 0.63 +1.0
2,139,478 + MPMX20_02045 0.64 -0.9
2,139,481 - MPMX20_02045 0.64 -1.9
2,139,533 - MPMX20_02045 0.68 +3.3
2,139,539 + MPMX20_02045 0.69 -0.4
2,139,614 + MPMX20_02045 0.75 -1.1
2,139,649 + MPMX20_02045 0.77 -0.6
2,139,679 - MPMX20_02045 0.80 +0.3

Or see this region's nucleotide sequence