Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01787

Experiment: TSB plate, Mixed culture; Bacillus zanthoxyli TBS_056 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01785 and MPMX20_01786 are separated by 10 nucleotidesMPMX20_01786 and MPMX20_01787 overlap by 20 nucleotidesMPMX20_01787 and MPMX20_01788 are separated by 11 nucleotides MPMX20_01785: MPMX20_01785 - hypothetical protein, at 1,877,334 to 1,877,708 _01785 MPMX20_01786: MPMX20_01786 - Penicillin-binding protein activator LpoB, at 1,877,719 to 1,878,366 _01786 MPMX20_01787: MPMX20_01787 - Thiamine kinase, at 1,878,347 to 1,879,171 _01787 MPMX20_01788: MPMX20_01788 - Beta-hexosaminidase, at 1,879,183 to 1,880,208 _01788 Position (kb) 1878 1879 1880Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1877.350 kb on + strandat 1877.355 kb on - strandat 1877.426 kb on - strand, within MPMX20_01785at 1877.430 kb on + strand, within MPMX20_01785at 1877.440 kb on + strand, within MPMX20_01785at 1877.495 kb on + strand, within MPMX20_01785at 1877.647 kb on + strand, within MPMX20_01785at 1877.649 kb on + strand, within MPMX20_01785at 1877.676 kb on - strandat 1877.679 kb on + strandat 1877.689 kb on + strandat 1877.698 kb on - strandat 1877.710 kb on + strandat 1877.711 kb on + strandat 1877.718 kb on - strandat 1877.766 kb on + strandat 1877.774 kb on - strandat 1877.780 kb on + strandat 1877.797 kb on - strand, within MPMX20_01786at 1877.797 kb on - strand, within MPMX20_01786at 1877.807 kb on - strand, within MPMX20_01786at 1877.977 kb on - strand, within MPMX20_01786at 1878.003 kb on + strand, within MPMX20_01786at 1878.003 kb on + strand, within MPMX20_01786at 1878.011 kb on - strand, within MPMX20_01786at 1878.026 kb on + strand, within MPMX20_01786at 1878.026 kb on + strand, within MPMX20_01786at 1878.106 kb on + strand, within MPMX20_01786at 1878.133 kb on - strand, within MPMX20_01786at 1878.143 kb on - strand, within MPMX20_01786at 1878.194 kb on + strand, within MPMX20_01786at 1878.194 kb on + strand, within MPMX20_01786at 1878.197 kb on - strand, within MPMX20_01786at 1878.252 kb on + strand, within MPMX20_01786at 1878.312 kb on + strandat 1878.355 kb on + strandat 1878.427 kb on + strandat 1878.488 kb on - strand, within MPMX20_01787at 1878.488 kb on - strand, within MPMX20_01787at 1878.506 kb on + strand, within MPMX20_01787at 1878.506 kb on + strand, within MPMX20_01787at 1878.506 kb on + strand, within MPMX20_01787at 1878.608 kb on + strand, within MPMX20_01787at 1878.616 kb on + strand, within MPMX20_01787at 1878.616 kb on - strand, within MPMX20_01787at 1878.616 kb on - strand, within MPMX20_01787at 1878.661 kb on + strand, within MPMX20_01787at 1878.681 kb on - strand, within MPMX20_01787at 1878.698 kb on + strand, within MPMX20_01787at 1878.719 kb on - strand, within MPMX20_01787at 1878.765 kb on + strand, within MPMX20_01787at 1878.765 kb on + strand, within MPMX20_01787at 1878.780 kb on + strand, within MPMX20_01787at 1878.780 kb on + strand, within MPMX20_01787at 1878.827 kb on + strand, within MPMX20_01787at 1878.844 kb on + strand, within MPMX20_01787at 1878.852 kb on - strand, within MPMX20_01787at 1878.896 kb on - strand, within MPMX20_01787at 1878.932 kb on + strand, within MPMX20_01787at 1878.961 kb on + strand, within MPMX20_01787at 1879.140 kb on - strandat 1879.174 kb on - strandat 1879.174 kb on - strandat 1879.176 kb on + strandat 1879.180 kb on + strandat 1879.211 kb on + strandat 1879.219 kb on - strandat 1879.231 kb on - strandat 1879.233 kb on + strandat 1879.320 kb on - strand, within MPMX20_01788at 1879.326 kb on + strand, within MPMX20_01788at 1879.391 kb on - strand, within MPMX20_01788at 1879.402 kb on + strand, within MPMX20_01788at 1879.410 kb on - strand, within MPMX20_01788at 1879.548 kb on - strand, within MPMX20_01788at 1879.552 kb on + strand, within MPMX20_01788at 1879.560 kb on - strand, within MPMX20_01788at 1879.579 kb on + strand, within MPMX20_01788at 1879.749 kb on - strand, within MPMX20_01788at 1880.084 kb on - strand, within MPMX20_01788at 1880.160 kb on + strandat 1880.168 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, Mixed culture; Bacillus zanthoxyli TBS_056 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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1,877,350 + +0.1
1,877,355 - +0.2
1,877,426 - MPMX20_01785 0.25 -0.1
1,877,430 + MPMX20_01785 0.26 +0.8
1,877,440 + MPMX20_01785 0.28 -0.7
1,877,495 + MPMX20_01785 0.43 -0.4
1,877,647 + MPMX20_01785 0.83 -1.8
1,877,649 + MPMX20_01785 0.84 -1.1
1,877,676 - -0.9
1,877,679 + -0.8
1,877,689 + +2.1
1,877,698 - +0.3
1,877,710 + +0.1
1,877,711 + -0.2
1,877,718 - -1.1
1,877,766 + -0.5
1,877,774 - -1.2
1,877,780 + -0.5
1,877,797 - MPMX20_01786 0.12 +0.3
1,877,797 - MPMX20_01786 0.12 -0.0
1,877,807 - MPMX20_01786 0.14 +0.8
1,877,977 - MPMX20_01786 0.40 +1.1
1,878,003 + MPMX20_01786 0.44 +0.4
1,878,003 + MPMX20_01786 0.44 +0.7
1,878,011 - MPMX20_01786 0.45 -2.3
1,878,026 + MPMX20_01786 0.47 +0.5
1,878,026 + MPMX20_01786 0.47 -0.9
1,878,106 + MPMX20_01786 0.60 -0.5
1,878,133 - MPMX20_01786 0.64 -0.9
1,878,143 - MPMX20_01786 0.65 +3.3
1,878,194 + MPMX20_01786 0.73 -0.7
1,878,194 + MPMX20_01786 0.73 -1.2
1,878,197 - MPMX20_01786 0.74 +0.7
1,878,252 + MPMX20_01786 0.82 -1.9
1,878,312 + -1.1
1,878,355 + -1.7
1,878,427 + +1.6
1,878,488 - MPMX20_01787 0.17 -1.0
1,878,488 - MPMX20_01787 0.17 +0.0
1,878,506 + MPMX20_01787 0.19 -1.5
1,878,506 + MPMX20_01787 0.19 -0.3
1,878,506 + MPMX20_01787 0.19 -0.8
1,878,608 + MPMX20_01787 0.32 -1.5
1,878,616 + MPMX20_01787 0.33 -1.3
1,878,616 - MPMX20_01787 0.33 -0.8
1,878,616 - MPMX20_01787 0.33 +1.3
1,878,661 + MPMX20_01787 0.38 -0.9
1,878,681 - MPMX20_01787 0.40 -1.7
1,878,698 + MPMX20_01787 0.43 +1.3
1,878,719 - MPMX20_01787 0.45 -1.0
1,878,765 + MPMX20_01787 0.51 -0.4
1,878,765 + MPMX20_01787 0.51 -3.2
1,878,780 + MPMX20_01787 0.52 -0.2
1,878,780 + MPMX20_01787 0.52 -1.0
1,878,827 + MPMX20_01787 0.58 -0.5
1,878,844 + MPMX20_01787 0.60 -0.1
1,878,852 - MPMX20_01787 0.61 +0.0
1,878,896 - MPMX20_01787 0.67 -0.9
1,878,932 + MPMX20_01787 0.71 -0.5
1,878,961 + MPMX20_01787 0.74 -0.5
1,879,140 - +0.5
1,879,174 - +0.8
1,879,174 - -0.2
1,879,176 + -0.4
1,879,180 + -0.2
1,879,211 + -0.6
1,879,219 - -0.7
1,879,231 - +0.8
1,879,233 + -1.3
1,879,320 - MPMX20_01788 0.13 -1.4
1,879,326 + MPMX20_01788 0.14 +1.0
1,879,391 - MPMX20_01788 0.20 -2.1
1,879,402 + MPMX20_01788 0.21 -2.2
1,879,410 - MPMX20_01788 0.22 -1.5
1,879,548 - MPMX20_01788 0.36 +1.3
1,879,552 + MPMX20_01788 0.36 +0.3
1,879,560 - MPMX20_01788 0.37 -0.7
1,879,579 + MPMX20_01788 0.39 -0.6
1,879,749 - MPMX20_01788 0.55 -1.0
1,880,084 - MPMX20_01788 0.88 -2.4
1,880,160 + -0.6
1,880,168 - +1.3

Or see this region's nucleotide sequence