Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00623

Experiment: TSB plate, Mixed culture; Bacillus zanthoxyli TBS_056 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00622 and MPMX20_00623 are separated by 3 nucleotidesMPMX20_00623 and MPMX20_00624 are separated by 39 nucleotidesMPMX20_00624 and MPMX20_00625 are separated by 154 nucleotides MPMX20_00622: MPMX20_00622 - hypothetical protein, at 646,774 to 648,045 _00622 MPMX20_00623: MPMX20_00623 - Threonine efflux protein, at 648,049 to 648,702 _00623 MPMX20_00624: MPMX20_00624 - HTH-type transcriptional activator RhaS, at 648,742 to 649,494 _00624 MPMX20_00625: MPMX20_00625 - Succinate-semialdehyde dehydrogenase [NADP(+)] 1, at 649,649 to 651,019 _00625 Position (kb) 648 649Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 647.082 kb on - strand, within MPMX20_00622at 647.135 kb on + strand, within MPMX20_00622at 647.143 kb on - strand, within MPMX20_00622at 647.143 kb on - strand, within MPMX20_00622at 647.384 kb on - strand, within MPMX20_00622at 647.454 kb on + strand, within MPMX20_00622at 647.462 kb on - strand, within MPMX20_00622at 647.488 kb on - strand, within MPMX20_00622at 647.491 kb on - strand, within MPMX20_00622at 647.504 kb on - strand, within MPMX20_00622at 647.563 kb on + strand, within MPMX20_00622at 647.650 kb on - strand, within MPMX20_00622at 647.693 kb on - strand, within MPMX20_00622at 647.712 kb on - strand, within MPMX20_00622at 647.782 kb on - strand, within MPMX20_00622at 647.873 kb on - strand, within MPMX20_00622at 647.890 kb on - strand, within MPMX20_00622at 647.922 kb on + strandat 647.922 kb on + strandat 647.930 kb on - strandat 647.945 kb on - strandat 647.945 kb on - strandat 648.005 kb on + strandat 648.020 kb on - strandat 648.061 kb on - strandat 648.152 kb on - strand, within MPMX20_00623at 648.209 kb on + strand, within MPMX20_00623at 648.209 kb on + strand, within MPMX20_00623at 648.217 kb on - strand, within MPMX20_00623at 648.341 kb on - strand, within MPMX20_00623at 648.387 kb on - strand, within MPMX20_00623at 648.387 kb on - strand, within MPMX20_00623at 648.393 kb on + strand, within MPMX20_00623at 648.426 kb on - strand, within MPMX20_00623at 648.435 kb on + strand, within MPMX20_00623at 648.443 kb on - strand, within MPMX20_00623at 648.444 kb on + strand, within MPMX20_00623at 648.456 kb on - strand, within MPMX20_00623at 648.484 kb on - strand, within MPMX20_00623at 648.489 kb on - strand, within MPMX20_00623at 648.494 kb on - strand, within MPMX20_00623at 648.536 kb on - strand, within MPMX20_00623at 648.550 kb on - strand, within MPMX20_00623at 648.555 kb on - strand, within MPMX20_00623at 648.570 kb on + strand, within MPMX20_00623at 648.588 kb on + strand, within MPMX20_00623at 648.635 kb on + strand, within MPMX20_00623at 648.643 kb on - strandat 648.643 kb on - strandat 648.643 kb on - strandat 648.643 kb on - strandat 648.643 kb on - strandat 648.643 kb on - strandat 648.671 kb on - strandat 648.686 kb on + strandat 648.694 kb on - strandat 648.704 kb on - strandat 648.732 kb on + strandat 648.732 kb on + strandat 648.740 kb on - strandat 648.760 kb on + strandat 648.795 kb on + strandat 648.797 kb on - strandat 648.892 kb on + strand, within MPMX20_00624at 648.904 kb on + strand, within MPMX20_00624at 648.908 kb on - strand, within MPMX20_00624at 648.912 kb on - strand, within MPMX20_00624at 648.960 kb on + strand, within MPMX20_00624at 648.968 kb on - strand, within MPMX20_00624at 648.968 kb on - strand, within MPMX20_00624at 648.968 kb on - strand, within MPMX20_00624at 648.968 kb on - strand, within MPMX20_00624at 648.968 kb on - strand, within MPMX20_00624at 648.968 kb on - strand, within MPMX20_00624at 649.027 kb on - strand, within MPMX20_00624at 649.044 kb on + strand, within MPMX20_00624at 649.081 kb on + strand, within MPMX20_00624at 649.084 kb on - strand, within MPMX20_00624at 649.089 kb on - strand, within MPMX20_00624at 649.103 kb on - strand, within MPMX20_00624at 649.115 kb on + strand, within MPMX20_00624at 649.115 kb on + strand, within MPMX20_00624at 649.115 kb on + strand, within MPMX20_00624at 649.161 kb on + strand, within MPMX20_00624at 649.229 kb on + strand, within MPMX20_00624at 649.244 kb on - strand, within MPMX20_00624at 649.255 kb on - strand, within MPMX20_00624at 649.269 kb on + strand, within MPMX20_00624at 649.271 kb on - strand, within MPMX20_00624at 649.319 kb on - strand, within MPMX20_00624at 649.336 kb on + strand, within MPMX20_00624at 649.336 kb on + strand, within MPMX20_00624at 649.336 kb on + strand, within MPMX20_00624at 649.336 kb on + strand, within MPMX20_00624at 649.336 kb on + strand, within MPMX20_00624at 649.336 kb on + strand, within MPMX20_00624at 649.336 kb on + strand, within MPMX20_00624at 649.337 kb on - strand, within MPMX20_00624at 649.344 kb on - strand, within MPMX20_00624at 649.344 kb on - strand, within MPMX20_00624at 649.344 kb on - strand, within MPMX20_00624at 649.344 kb on - strand, within MPMX20_00624at 649.344 kb on - strand, within MPMX20_00624at 649.344 kb on - strand, within MPMX20_00624at 649.344 kb on - strand, within MPMX20_00624at 649.344 kb on - strand, within MPMX20_00624at 649.344 kb on - strand, within MPMX20_00624at 649.344 kb on - strand, within MPMX20_00624at 649.344 kb on - strand, within MPMX20_00624at 649.344 kb on - strand, within MPMX20_00624at 649.349 kb on + strand, within MPMX20_00624at 649.354 kb on - strand, within MPMX20_00624at 649.391 kb on + strand, within MPMX20_00624at 649.419 kb on - strandat 649.421 kb on - strandat 649.433 kb on - strandat 649.461 kb on - strandat 649.490 kb on + strandat 649.504 kb on - strandat 649.556 kb on - strandat 649.556 kb on - strandat 649.578 kb on - strandat 649.649 kb on - strandat 649.650 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, Mixed culture; Bacillus zanthoxyli TBS_056 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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647,082 - MPMX20_00622 0.24 -1.3
647,135 + MPMX20_00622 0.28 -1.8
647,143 - MPMX20_00622 0.29 -0.3
647,143 - MPMX20_00622 0.29 -0.4
647,384 - MPMX20_00622 0.48 -0.7
647,454 + MPMX20_00622 0.53 -1.6
647,462 - MPMX20_00622 0.54 -2.6
647,488 - MPMX20_00622 0.56 -0.8
647,491 - MPMX20_00622 0.56 +1.4
647,504 - MPMX20_00622 0.57 +1.4
647,563 + MPMX20_00622 0.62 +0.1
647,650 - MPMX20_00622 0.69 -0.4
647,693 - MPMX20_00622 0.72 +0.9
647,712 - MPMX20_00622 0.74 +1.4
647,782 - MPMX20_00622 0.79 -0.4
647,873 - MPMX20_00622 0.86 -0.3
647,890 - MPMX20_00622 0.88 -1.2
647,922 + -1.1
647,922 + -1.2
647,930 - -0.8
647,945 - +0.4
647,945 - -0.2
648,005 + -1.8
648,020 - +0.7
648,061 - -0.3
648,152 - MPMX20_00623 0.16 +2.7
648,209 + MPMX20_00623 0.24 +2.7
648,209 + MPMX20_00623 0.24 +1.0
648,217 - MPMX20_00623 0.26 -1.9
648,341 - MPMX20_00623 0.45 -0.6
648,387 - MPMX20_00623 0.52 +0.1
648,387 - MPMX20_00623 0.52 -0.7
648,393 + MPMX20_00623 0.53 -0.0
648,426 - MPMX20_00623 0.58 -0.7
648,435 + MPMX20_00623 0.59 +1.7
648,443 - MPMX20_00623 0.60 -0.3
648,444 + MPMX20_00623 0.60 -1.0
648,456 - MPMX20_00623 0.62 -0.4
648,484 - MPMX20_00623 0.67 -0.0
648,489 - MPMX20_00623 0.67 +0.1
648,494 - MPMX20_00623 0.68 +1.5
648,536 - MPMX20_00623 0.74 -0.1
648,550 - MPMX20_00623 0.77 -0.9
648,555 - MPMX20_00623 0.77 +0.0
648,570 + MPMX20_00623 0.80 +0.4
648,588 + MPMX20_00623 0.82 -0.4
648,635 + MPMX20_00623 0.90 +0.3
648,643 - -0.6
648,643 - -0.5
648,643 - +0.0
648,643 - -0.5
648,643 - -0.1
648,643 - +1.0
648,671 - -2.1
648,686 + +0.7
648,694 - -2.0
648,704 - -1.0
648,732 + -0.9
648,732 + -0.4
648,740 - -0.2
648,760 + +0.0
648,795 + +0.4
648,797 - -0.3
648,892 + MPMX20_00624 0.20 -2.8
648,904 + MPMX20_00624 0.22 -1.5
648,908 - MPMX20_00624 0.22 -1.5
648,912 - MPMX20_00624 0.23 -2.0
648,960 + MPMX20_00624 0.29 -0.2
648,968 - MPMX20_00624 0.30 -0.7
648,968 - MPMX20_00624 0.30 +0.6
648,968 - MPMX20_00624 0.30 -1.7
648,968 - MPMX20_00624 0.30 +2.3
648,968 - MPMX20_00624 0.30 -1.7
648,968 - MPMX20_00624 0.30 -1.4
649,027 - MPMX20_00624 0.38 +0.1
649,044 + MPMX20_00624 0.40 -1.1
649,081 + MPMX20_00624 0.45 +0.1
649,084 - MPMX20_00624 0.45 -1.4
649,089 - MPMX20_00624 0.46 +0.5
649,103 - MPMX20_00624 0.48 +1.7
649,115 + MPMX20_00624 0.50 -0.6
649,115 + MPMX20_00624 0.50 -0.5
649,115 + MPMX20_00624 0.50 +0.4
649,161 + MPMX20_00624 0.56 +1.1
649,229 + MPMX20_00624 0.65 -1.1
649,244 - MPMX20_00624 0.67 -1.6
649,255 - MPMX20_00624 0.68 -0.6
649,269 + MPMX20_00624 0.70 -0.0
649,271 - MPMX20_00624 0.70 -0.9
649,319 - MPMX20_00624 0.77 -0.7
649,336 + MPMX20_00624 0.79 +2.7
649,336 + MPMX20_00624 0.79 -0.1
649,336 + MPMX20_00624 0.79 -2.0
649,336 + MPMX20_00624 0.79 -1.2
649,336 + MPMX20_00624 0.79 +0.1
649,336 + MPMX20_00624 0.79 -1.1
649,336 + MPMX20_00624 0.79 +0.7
649,337 - MPMX20_00624 0.79 +0.7
649,344 - MPMX20_00624 0.80 +1.7
649,344 - MPMX20_00624 0.80 +0.4
649,344 - MPMX20_00624 0.80 -0.1
649,344 - MPMX20_00624 0.80 +0.8
649,344 - MPMX20_00624 0.80 -2.5
649,344 - MPMX20_00624 0.80 -0.9
649,344 - MPMX20_00624 0.80 -2.2
649,344 - MPMX20_00624 0.80 -0.5
649,344 - MPMX20_00624 0.80 -1.4
649,344 - MPMX20_00624 0.80 +0.7
649,344 - MPMX20_00624 0.80 +0.7
649,344 - MPMX20_00624 0.80 +0.1
649,349 + MPMX20_00624 0.81 -2.7
649,354 - MPMX20_00624 0.81 -0.7
649,391 + MPMX20_00624 0.86 -1.8
649,419 - +0.7
649,421 - -0.5
649,433 - +1.1
649,461 - +0.2
649,490 + +0.7
649,504 - -0.1
649,556 - -1.1
649,556 - +0.4
649,578 - +1.4
649,649 - -3.0
649,650 + -0.6

Or see this region's nucleotide sequence