Experiment: TSB plate, Mixed culture; Bacillus zanthoxyli TBS_056 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00483 and MPMX20_00484 are separated by 313 nucleotides MPMX20_00484 and MPMX20_00485 are separated by 65 nucleotides MPMX20_00485 and MPMX20_00486 are separated by 246 nucleotides
MPMX20_00483: MPMX20_00483 - FKBP-type 22 kDa peptidyl-prolyl cis-trans isomerase, at 495,466 to 496,086
_00483
MPMX20_00484: MPMX20_00484 - D-serine/D-alanine/glycine transporter, at 496,400 to 497,809
_00484
MPMX20_00485: MPMX20_00485 - Iron-sulfur cluster repair protein YtfE, at 497,875 to 498,537
_00485
MPMX20_00486: MPMX20_00486 - Methyl-accepting chemotaxis protein I, at 498,784 to 500,433
_00486
Position (kb) 496
497
498 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 495.421 kb on + strand at 495.422 kb on - strand at 495.422 kb on - strand at 495.463 kb on + strand at 495.470 kb on - strand at 495.471 kb on - strand at 495.471 kb on - strand at 495.522 kb on + strand at 495.538 kb on - strand, within MPMX20_00483 at 495.549 kb on - strand, within MPMX20_00483 at 495.614 kb on + strand, within MPMX20_00483 at 495.642 kb on - strand, within MPMX20_00483 at 495.751 kb on + strand, within MPMX20_00483 at 495.759 kb on - strand, within MPMX20_00483 at 495.764 kb on - strand, within MPMX20_00483 at 495.767 kb on + strand, within MPMX20_00483 at 495.775 kb on - strand, within MPMX20_00483 at 495.798 kb on + strand, within MPMX20_00483 at 495.871 kb on + strand, within MPMX20_00483 at 495.879 kb on - strand, within MPMX20_00483 at 495.881 kb on + strand, within MPMX20_00483 at 495.889 kb on - strand, within MPMX20_00483 at 495.892 kb on - strand, within MPMX20_00483 at 495.892 kb on - strand, within MPMX20_00483 at 495.946 kb on - strand, within MPMX20_00483 at 495.998 kb on + strand, within MPMX20_00483 at 495.998 kb on + strand, within MPMX20_00483 at 496.014 kb on + strand, within MPMX20_00483 at 496.019 kb on + strand, within MPMX20_00483 at 496.046 kb on + strand at 496.049 kb on - strand at 496.054 kb on - strand at 496.131 kb on - strand at 496.138 kb on + strand at 496.138 kb on + strand at 496.207 kb on + strand at 496.215 kb on + strand at 496.217 kb on + strand at 496.231 kb on + strand at 496.262 kb on + strand at 496.274 kb on + strand at 496.300 kb on + strand at 496.350 kb on + strand at 496.350 kb on + strand at 496.350 kb on + strand at 496.350 kb on + strand at 496.350 kb on + strand at 496.355 kb on + strand at 496.358 kb on - strand at 496.358 kb on - strand at 496.369 kb on + strand at 496.377 kb on - strand at 496.378 kb on + strand at 496.378 kb on + strand at 496.386 kb on - strand at 496.386 kb on - strand at 496.409 kb on - strand at 496.411 kb on + strand at 496.411 kb on + strand at 496.411 kb on + strand at 496.411 kb on + strand at 496.411 kb on + strand at 496.411 kb on + strand at 496.411 kb on + strand at 496.411 kb on + strand at 496.411 kb on + strand at 496.411 kb on + strand at 496.419 kb on - strand at 496.419 kb on - strand at 496.419 kb on - strand at 496.419 kb on - strand at 496.419 kb on - strand at 496.419 kb on - strand at 496.419 kb on - strand at 496.419 kb on - strand at 496.419 kb on - strand at 496.419 kb on - strand at 496.419 kb on - strand at 496.419 kb on - strand at 496.419 kb on - strand at 496.440 kb on + strand at 496.440 kb on + strand at 496.443 kb on - strand at 496.443 kb on - strand at 496.448 kb on - strand at 496.448 kb on - strand at 496.448 kb on - strand at 496.448 kb on - strand at 496.448 kb on - strand at 496.448 kb on - strand at 496.448 kb on - strand at 496.448 kb on - strand at 496.482 kb on - strand at 496.486 kb on + strand at 496.520 kb on - strand at 496.520 kb on - strand at 496.520 kb on - strand at 496.520 kb on - strand at 496.522 kb on + strand at 496.530 kb on - strand at 496.535 kb on + strand at 496.548 kb on + strand, within MPMX20_00484 at 496.689 kb on - strand, within MPMX20_00484 at 496.728 kb on + strand, within MPMX20_00484 at 496.788 kb on - strand, within MPMX20_00484 at 496.788 kb on - strand, within MPMX20_00484 at 496.788 kb on - strand, within MPMX20_00484 at 496.842 kb on + strand, within MPMX20_00484 at 496.842 kb on + strand, within MPMX20_00484 at 496.842 kb on + strand, within MPMX20_00484 at 496.842 kb on + strand, within MPMX20_00484 at 496.842 kb on + strand, within MPMX20_00484 at 496.882 kb on + strand, within MPMX20_00484 at 496.895 kb on - strand, within MPMX20_00484 at 496.895 kb on - strand, within MPMX20_00484 at 496.957 kb on + strand, within MPMX20_00484 at 496.982 kb on - strand, within MPMX20_00484 at 497.063 kb on + strand, within MPMX20_00484 at 497.079 kb on + strand, within MPMX20_00484 at 497.087 kb on - strand, within MPMX20_00484 at 497.097 kb on - strand, within MPMX20_00484 at 497.097 kb on - strand, within MPMX20_00484 at 497.097 kb on - strand, within MPMX20_00484 at 497.151 kb on - strand, within MPMX20_00484 at 497.174 kb on - strand, within MPMX20_00484 at 497.191 kb on + strand, within MPMX20_00484 at 497.221 kb on - strand, within MPMX20_00484 at 497.223 kb on + strand, within MPMX20_00484 at 497.223 kb on + strand, within MPMX20_00484 at 497.231 kb on - strand, within MPMX20_00484 at 497.231 kb on - strand, within MPMX20_00484 at 497.266 kb on + strand, within MPMX20_00484 at 497.269 kb on - strand, within MPMX20_00484 at 497.275 kb on + strand, within MPMX20_00484 at 497.275 kb on + strand, within MPMX20_00484 at 497.306 kb on + strand, within MPMX20_00484 at 497.306 kb on + strand, within MPMX20_00484 at 497.306 kb on + strand, within MPMX20_00484 at 497.314 kb on - strand, within MPMX20_00484 at 497.342 kb on - strand, within MPMX20_00484 at 497.355 kb on + strand, within MPMX20_00484 at 497.363 kb on - strand, within MPMX20_00484 at 497.363 kb on - strand, within MPMX20_00484 at 497.363 kb on - strand, within MPMX20_00484 at 497.385 kb on + strand, within MPMX20_00484 at 497.385 kb on + strand, within MPMX20_00484 at 497.393 kb on - strand, within MPMX20_00484 at 497.393 kb on - strand, within MPMX20_00484 at 497.413 kb on + strand, within MPMX20_00484 at 497.421 kb on - strand, within MPMX20_00484 at 497.421 kb on - strand, within MPMX20_00484 at 497.421 kb on - strand, within MPMX20_00484 at 497.421 kb on - strand, within MPMX20_00484 at 497.421 kb on - strand, within MPMX20_00484 at 497.438 kb on + strand, within MPMX20_00484 at 497.469 kb on + strand, within MPMX20_00484 at 497.472 kb on - strand, within MPMX20_00484 at 497.495 kb on - strand, within MPMX20_00484 at 497.543 kb on - strand, within MPMX20_00484 at 497.545 kb on + strand, within MPMX20_00484 at 497.554 kb on + strand, within MPMX20_00484 at 497.569 kb on + strand, within MPMX20_00484 at 497.585 kb on + strand, within MPMX20_00484 at 497.601 kb on + strand, within MPMX20_00484 at 497.601 kb on + strand, within MPMX20_00484 at 497.609 kb on - strand, within MPMX20_00484 at 497.648 kb on + strand, within MPMX20_00484 at 497.712 kb on + strand at 497.748 kb on - strand at 497.754 kb on + strand at 497.759 kb on + strand at 497.845 kb on + strand at 497.853 kb on - strand at 497.853 kb on - strand at 497.894 kb on + strand at 497.902 kb on - strand at 497.902 kb on - strand at 497.902 kb on - strand at 497.918 kb on + strand at 497.921 kb on - strand at 497.923 kb on + strand at 497.926 kb on - strand at 497.965 kb on + strand, within MPMX20_00485 at 497.973 kb on - strand, within MPMX20_00485 at 497.984 kb on + strand, within MPMX20_00485 at 497.984 kb on + strand, within MPMX20_00485 at 497.992 kb on - strand, within MPMX20_00485 at 498.003 kb on + strand, within MPMX20_00485 at 498.003 kb on + strand, within MPMX20_00485 at 498.101 kb on + strand, within MPMX20_00485 at 498.101 kb on + strand, within MPMX20_00485 at 498.101 kb on + strand, within MPMX20_00485 at 498.109 kb on - strand, within MPMX20_00485 at 498.109 kb on - strand, within MPMX20_00485 at 498.109 kb on - strand, within MPMX20_00485 at 498.109 kb on - strand, within MPMX20_00485 at 498.109 kb on - strand, within MPMX20_00485 at 498.109 kb on - strand, within MPMX20_00485 at 498.130 kb on + strand, within MPMX20_00485 at 498.162 kb on + strand, within MPMX20_00485 at 498.257 kb on + strand, within MPMX20_00485 at 498.321 kb on - strand, within MPMX20_00485 at 498.332 kb on - strand, within MPMX20_00485 at 498.332 kb on - strand, within MPMX20_00485 at 498.365 kb on - strand, within MPMX20_00485 at 498.380 kb on + strand, within MPMX20_00485 at 498.410 kb on - strand, within MPMX20_00485 at 498.423 kb on - strand, within MPMX20_00485 at 498.431 kb on - strand, within MPMX20_00485 at 498.431 kb on - strand, within MPMX20_00485 at 498.451 kb on - strand, within MPMX20_00485 at 498.456 kb on - strand, within MPMX20_00485 at 498.456 kb on - strand, within MPMX20_00485 at 498.532 kb on + strand at 498.532 kb on + strand at 498.532 kb on + strand at 498.540 kb on - strand at 498.547 kb on - strand at 498.596 kb on + strand at 498.597 kb on + strand at 498.604 kb on - strand at 498.605 kb on - strand at 498.605 kb on - strand at 498.714 kb on + strand at 498.717 kb on - strand at 498.751 kb on - strand at 498.754 kb on + strand at 498.762 kb on - strand at 498.786 kb on + strand at 498.801 kb on + strand at 498.802 kb on + strand at 498.802 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, Mixed culture; Bacillus zanthoxyli TBS_056 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct remove 495,421 + +1.2 495,422 - +0.6 495,422 - +0.6 495,463 + +0.6 495,470 - +0.3 495,471 - -0.7 495,471 - -0.8 495,522 + -0.7 495,538 - MPMX20_00483 0.12 -0.8 495,549 - MPMX20_00483 0.13 +1.4 495,614 + MPMX20_00483 0.24 -2.0 495,642 - MPMX20_00483 0.28 +1.1 495,751 + MPMX20_00483 0.46 +0.1 495,759 - MPMX20_00483 0.47 -0.5 495,764 - MPMX20_00483 0.48 -0.7 495,767 + MPMX20_00483 0.48 -0.6 495,775 - MPMX20_00483 0.50 +2.0 495,798 + MPMX20_00483 0.53 +0.3 495,871 + MPMX20_00483 0.65 -0.2 495,879 - MPMX20_00483 0.67 +0.8 495,881 + MPMX20_00483 0.67 -1.6 495,889 - MPMX20_00483 0.68 +0.6 495,892 - MPMX20_00483 0.69 +0.1 495,892 - MPMX20_00483 0.69 -2.1 495,946 - MPMX20_00483 0.77 +0.3 495,998 + MPMX20_00483 0.86 -0.9 495,998 + MPMX20_00483 0.86 -2.2 496,014 + MPMX20_00483 0.88 -0.3 496,019 + MPMX20_00483 0.89 -0.7 496,046 + -0.9 496,049 - +0.1 496,054 - +0.3 496,131 - -1.0 496,138 + +1.1 496,138 + +1.6 496,207 + -1.4 496,215 + -1.0 496,217 + +0.3 496,231 + -1.3 496,262 + -0.1 496,274 + +0.4 496,300 + -2.1 496,350 + -0.9 496,350 + +1.6 496,350 + -0.0 496,350 + -2.4 496,350 + -2.5 496,355 + +0.1 496,358 - +2.1 496,358 - +0.1 496,369 + -0.9 496,377 - -0.7 496,378 + -1.3 496,378 + -0.2 496,386 - +1.1 496,386 - -0.3 496,409 - -1.1 496,411 + +2.0 496,411 + -1.5 496,411 + -1.0 496,411 + +0.1 496,411 + -0.4 496,411 + -0.5 496,411 + -0.2 496,411 + -1.7 496,411 + -0.5 496,411 + -1.1 496,419 - +0.1 496,419 - -0.8 496,419 - +1.5 496,419 - +1.1 496,419 - -1.4 496,419 - +0.1 496,419 - -1.0 496,419 - -0.8 496,419 - -0.7 496,419 - -1.9 496,419 - +0.1 496,419 - +0.6 496,419 - -1.6 496,440 + -0.1 496,440 + -1.3 496,443 - -1.9 496,443 - -0.6 496,448 - -1.1 496,448 - +2.2 496,448 - +1.1 496,448 - -0.9 496,448 - -0.7 496,448 - +1.1 496,448 - -0.3 496,448 - -0.2 496,482 - -0.1 496,486 + +1.1 496,520 - +0.6 496,520 - +1.6 496,520 - -0.2 496,520 - -1.5 496,522 + +0.9 496,530 - +2.6 496,535 + -0.2 496,548 + MPMX20_00484 0.10 +0.3 496,689 - MPMX20_00484 0.20 -0.3 496,728 + MPMX20_00484 0.23 -1.6 496,788 - MPMX20_00484 0.28 -0.9 496,788 - MPMX20_00484 0.28 -1.4 496,788 - MPMX20_00484 0.28 -0.7 496,842 + MPMX20_00484 0.31 -0.9 496,842 + MPMX20_00484 0.31 -1.0 496,842 + MPMX20_00484 0.31 +1.6 496,842 + MPMX20_00484 0.31 -0.5 496,842 + MPMX20_00484 0.31 +0.3 496,882 + MPMX20_00484 0.34 -1.4 496,895 - MPMX20_00484 0.35 -0.8 496,895 - MPMX20_00484 0.35 -1.7 496,957 + MPMX20_00484 0.40 +0.1 496,982 - MPMX20_00484 0.41 -0.4 497,063 + MPMX20_00484 0.47 -0.6 497,079 + MPMX20_00484 0.48 -0.9 497,087 - MPMX20_00484 0.49 -0.2 497,097 - MPMX20_00484 0.49 -3.3 497,097 - MPMX20_00484 0.49 +0.8 497,097 - MPMX20_00484 0.49 +0.3 497,151 - MPMX20_00484 0.53 -0.1 497,174 - MPMX20_00484 0.55 -2.2 497,191 + MPMX20_00484 0.56 +0.4 497,221 - MPMX20_00484 0.58 -1.1 497,223 + MPMX20_00484 0.58 +1.2 497,223 + MPMX20_00484 0.58 +1.1 497,231 - MPMX20_00484 0.59 +2.6 497,231 - MPMX20_00484 0.59 -0.7 497,266 + MPMX20_00484 0.61 +0.1 497,269 - MPMX20_00484 0.62 -0.7 497,275 + MPMX20_00484 0.62 -0.3 497,275 + MPMX20_00484 0.62 +0.2 497,306 + MPMX20_00484 0.64 +0.3 497,306 + MPMX20_00484 0.64 -0.8 497,306 + MPMX20_00484 0.64 -0.4 497,314 - MPMX20_00484 0.65 +1.3 497,342 - MPMX20_00484 0.67 -0.1 497,355 + MPMX20_00484 0.68 -0.2 497,363 - MPMX20_00484 0.68 -1.2 497,363 - MPMX20_00484 0.68 +0.4 497,363 - MPMX20_00484 0.68 +2.1 497,385 + MPMX20_00484 0.70 -1.1 497,385 + MPMX20_00484 0.70 +1.1 497,393 - MPMX20_00484 0.70 +0.8 497,393 - MPMX20_00484 0.70 +0.3 497,413 + MPMX20_00484 0.72 -2.2 497,421 - MPMX20_00484 0.72 -1.2 497,421 - MPMX20_00484 0.72 -1.8 497,421 - MPMX20_00484 0.72 -1.4 497,421 - MPMX20_00484 0.72 -0.7 497,421 - MPMX20_00484 0.72 -0.9 497,438 + MPMX20_00484 0.74 -1.5 497,469 + MPMX20_00484 0.76 -0.7 497,472 - MPMX20_00484 0.76 +0.6 497,495 - MPMX20_00484 0.78 -1.1 497,543 - MPMX20_00484 0.81 +0.3 497,545 + MPMX20_00484 0.81 +1.1 497,554 + MPMX20_00484 0.82 -1.6 497,569 + MPMX20_00484 0.83 -3.1 497,585 + MPMX20_00484 0.84 +1.6 497,601 + MPMX20_00484 0.85 +2.6 497,601 + MPMX20_00484 0.85 +1.1 497,609 - MPMX20_00484 0.86 +1.6 497,648 + MPMX20_00484 0.89 -0.9 497,712 + -1.0 497,748 - -1.1 497,754 + +1.3 497,759 + -2.0 497,845 + +0.1 497,853 - +0.1 497,853 - -1.9 497,894 + -0.5 497,902 - -0.2 497,902 - -1.2 497,902 - -1.1 497,918 + -1.1 497,921 - +0.8 497,923 + -0.9 497,926 - +0.5 497,965 + MPMX20_00485 0.14 -0.6 497,973 - MPMX20_00485 0.15 -1.8 497,984 + MPMX20_00485 0.16 +2.2 497,984 + MPMX20_00485 0.16 +0.1 497,992 - MPMX20_00485 0.18 +1.1 498,003 + MPMX20_00485 0.19 -0.4 498,003 + MPMX20_00485 0.19 +1.6 498,101 + MPMX20_00485 0.34 +1.1 498,101 + MPMX20_00485 0.34 -2.5 498,101 + MPMX20_00485 0.34 -0.9 498,109 - MPMX20_00485 0.35 +0.3 498,109 - MPMX20_00485 0.35 +0.6 498,109 - MPMX20_00485 0.35 -0.4 498,109 - MPMX20_00485 0.35 -1.1 498,109 - MPMX20_00485 0.35 -0.7 498,109 - MPMX20_00485 0.35 -1.6 498,130 + MPMX20_00485 0.38 +0.6 498,162 + MPMX20_00485 0.43 -1.2 498,257 + MPMX20_00485 0.58 +1.1 498,321 - MPMX20_00485 0.67 -0.9 498,332 - MPMX20_00485 0.69 -0.2 498,332 - MPMX20_00485 0.69 +1.1 498,365 - MPMX20_00485 0.74 -0.7 498,380 + MPMX20_00485 0.76 -0.7 498,410 - MPMX20_00485 0.81 -0.3 498,423 - MPMX20_00485 0.83 +0.3 498,431 - MPMX20_00485 0.84 +0.1 498,431 - MPMX20_00485 0.84 +0.1 498,451 - MPMX20_00485 0.87 -0.7 498,456 - MPMX20_00485 0.88 -0.5 498,456 - MPMX20_00485 0.88 +2.6 498,532 + +0.9 498,532 + -0.3 498,532 + +0.6 498,540 - +1.3 498,547 - +0.1 498,596 + +1.3 498,597 + -0.2 498,604 - -1.1 498,605 - -0.5 498,605 - +1.6 498,714 + -0.7 498,717 - +0.6 498,751 - +1.3 498,754 + +0.6 498,762 - -0.4 498,786 + -0.7 498,801 + -2.2 498,802 + -0.5 498,802 - -1.3
Or see this region's nucleotide sequence