Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00027

Experiment: TSB plate, Mixed culture; Bacillus zanthoxyli TBS_056 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00026 and MPMX20_00027 overlap by 98 nucleotidesMPMX20_00027 and MPMX20_00028 are separated by 175 nucleotides MPMX20_00026: MPMX20_00026 - hypothetical protein, at 27,369 to 28,457 _00026 MPMX20_00027: MPMX20_00027 - Multidrug resistance protein D, at 28,360 to 29,544 _00027 MPMX20_00028: MPMX20_00028 - hypothetical protein, at 29,720 to 30,553 _00028 Position (kb) 28 29 30Strain fitness (log2 ratio) -2 -1 0 1 2 3at 27.399 kb on - strandat 27.401 kb on - strandat 27.480 kb on + strand, within MPMX20_00026at 27.480 kb on + strand, within MPMX20_00026at 27.480 kb on + strand, within MPMX20_00026at 27.488 kb on - strand, within MPMX20_00026at 27.488 kb on - strand, within MPMX20_00026at 27.509 kb on - strand, within MPMX20_00026at 27.554 kb on + strand, within MPMX20_00026at 27.554 kb on + strand, within MPMX20_00026at 27.563 kb on - strand, within MPMX20_00026at 27.563 kb on - strand, within MPMX20_00026at 27.567 kb on + strand, within MPMX20_00026at 27.575 kb on - strand, within MPMX20_00026at 27.575 kb on - strand, within MPMX20_00026at 27.626 kb on + strand, within MPMX20_00026at 27.627 kb on + strand, within MPMX20_00026at 27.764 kb on - strand, within MPMX20_00026at 27.778 kb on + strand, within MPMX20_00026at 27.823 kb on - strand, within MPMX20_00026at 27.823 kb on - strand, within MPMX20_00026at 27.823 kb on - strand, within MPMX20_00026at 27.935 kb on - strand, within MPMX20_00026at 27.937 kb on + strand, within MPMX20_00026at 27.945 kb on - strand, within MPMX20_00026at 28.024 kb on - strand, within MPMX20_00026at 28.062 kb on + strand, within MPMX20_00026at 28.129 kb on + strand, within MPMX20_00026at 28.129 kb on - strand, within MPMX20_00026at 28.312 kb on - strand, within MPMX20_00026at 28.396 kb on - strandat 28.447 kb on + strandat 28.455 kb on - strandat 28.455 kb on - strandat 28.455 kb on - strandat 28.521 kb on - strand, within MPMX20_00027at 28.523 kb on + strand, within MPMX20_00027at 28.523 kb on + strand, within MPMX20_00027at 28.523 kb on + strand, within MPMX20_00027at 28.531 kb on - strand, within MPMX20_00027at 28.531 kb on - strand, within MPMX20_00027at 28.531 kb on - strand, within MPMX20_00027at 28.531 kb on - strand, within MPMX20_00027at 28.613 kb on + strand, within MPMX20_00027at 28.626 kb on - strand, within MPMX20_00027at 28.626 kb on - strand, within MPMX20_00027at 28.628 kb on + strand, within MPMX20_00027at 28.691 kb on + strand, within MPMX20_00027at 28.705 kb on + strand, within MPMX20_00027at 28.713 kb on - strand, within MPMX20_00027at 28.715 kb on + strand, within MPMX20_00027at 28.716 kb on - strand, within MPMX20_00027at 28.717 kb on - strand, within MPMX20_00027at 28.728 kb on + strand, within MPMX20_00027at 28.739 kb on + strand, within MPMX20_00027at 28.792 kb on - strand, within MPMX20_00027at 28.817 kb on + strand, within MPMX20_00027at 28.820 kb on - strand, within MPMX20_00027at 28.827 kb on + strand, within MPMX20_00027at 28.827 kb on + strand, within MPMX20_00027at 28.835 kb on - strand, within MPMX20_00027at 28.838 kb on + strand, within MPMX20_00027at 28.928 kb on + strand, within MPMX20_00027at 28.987 kb on + strand, within MPMX20_00027at 29.024 kb on + strand, within MPMX20_00027at 29.060 kb on + strand, within MPMX20_00027at 29.106 kb on + strand, within MPMX20_00027at 29.106 kb on + strand, within MPMX20_00027at 29.259 kb on + strand, within MPMX20_00027at 29.259 kb on + strand, within MPMX20_00027at 29.259 kb on + strand, within MPMX20_00027at 29.259 kb on + strand, within MPMX20_00027at 29.267 kb on - strand, within MPMX20_00027at 29.267 kb on - strand, within MPMX20_00027at 29.267 kb on - strand, within MPMX20_00027at 29.268 kb on - strand, within MPMX20_00027at 29.354 kb on + strand, within MPMX20_00027at 29.381 kb on - strand, within MPMX20_00027at 29.404 kb on + strand, within MPMX20_00027at 29.404 kb on + strand, within MPMX20_00027at 29.412 kb on - strand, within MPMX20_00027at 29.412 kb on - strand, within MPMX20_00027at 29.435 kb on - strandat 29.478 kb on - strandat 29.507 kb on + strandat 29.617 kb on + strandat 29.669 kb on + strandat 29.801 kb on - strandat 29.876 kb on + strand, within MPMX20_00028at 29.930 kb on - strand, within MPMX20_00028at 29.930 kb on - strand, within MPMX20_00028at 29.956 kb on + strand, within MPMX20_00028at 30.004 kb on + strand, within MPMX20_00028at 30.012 kb on - strand, within MPMX20_00028at 30.026 kb on + strand, within MPMX20_00028at 30.034 kb on + strand, within MPMX20_00028at 30.034 kb on + strand, within MPMX20_00028at 30.036 kb on + strand, within MPMX20_00028at 30.036 kb on + strand, within MPMX20_00028at 30.044 kb on - strand, within MPMX20_00028at 30.044 kb on - strand, within MPMX20_00028at 30.049 kb on - strand, within MPMX20_00028at 30.059 kb on - strand, within MPMX20_00028at 30.085 kb on + strand, within MPMX20_00028at 30.093 kb on - strand, within MPMX20_00028at 30.093 kb on - strand, within MPMX20_00028at 30.108 kb on + strand, within MPMX20_00028at 30.108 kb on + strand, within MPMX20_00028at 30.108 kb on + strand, within MPMX20_00028at 30.108 kb on + strand, within MPMX20_00028at 30.116 kb on - strand, within MPMX20_00028at 30.116 kb on - strand, within MPMX20_00028at 30.116 kb on - strand, within MPMX20_00028at 30.118 kb on + strand, within MPMX20_00028at 30.118 kb on + strand, within MPMX20_00028at 30.118 kb on + strand, within MPMX20_00028at 30.118 kb on + strand, within MPMX20_00028at 30.118 kb on + strand, within MPMX20_00028at 30.118 kb on + strand, within MPMX20_00028at 30.118 kb on + strand, within MPMX20_00028at 30.118 kb on + strand, within MPMX20_00028at 30.118 kb on + strand, within MPMX20_00028at 30.118 kb on + strand, within MPMX20_00028at 30.118 kb on + strand, within MPMX20_00028at 30.118 kb on + strand, within MPMX20_00028at 30.126 kb on - strand, within MPMX20_00028at 30.126 kb on - strand, within MPMX20_00028at 30.126 kb on - strand, within MPMX20_00028at 30.126 kb on - strand, within MPMX20_00028at 30.126 kb on - strand, within MPMX20_00028at 30.126 kb on - strand, within MPMX20_00028at 30.126 kb on - strand, within MPMX20_00028at 30.126 kb on - strand, within MPMX20_00028at 30.126 kb on - strand, within MPMX20_00028at 30.126 kb on - strand, within MPMX20_00028at 30.131 kb on - strand, within MPMX20_00028at 30.132 kb on + strand, within MPMX20_00028at 30.140 kb on - strand, within MPMX20_00028at 30.185 kb on + strand, within MPMX20_00028at 30.218 kb on - strand, within MPMX20_00028at 30.318 kb on - strand, within MPMX20_00028at 30.320 kb on - strand, within MPMX20_00028at 30.334 kb on - strand, within MPMX20_00028at 30.336 kb on + strand, within MPMX20_00028at 30.344 kb on - strand, within MPMX20_00028at 30.352 kb on - strand, within MPMX20_00028at 30.380 kb on + strand, within MPMX20_00028at 30.394 kb on + strand, within MPMX20_00028at 30.402 kb on - strand, within MPMX20_00028at 30.402 kb on - strand, within MPMX20_00028at 30.423 kb on - strand, within MPMX20_00028at 30.450 kb on - strand, within MPMX20_00028at 30.488 kb on - strandat 30.511 kb on + strandat 30.516 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, Mixed culture; Bacillus zanthoxyli TBS_056 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection-direct
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27,399 - -0.4
27,401 - -2.3
27,480 + MPMX20_00026 0.10 +1.4
27,480 + MPMX20_00026 0.10 -0.0
27,480 + MPMX20_00026 0.10 -0.9
27,488 - MPMX20_00026 0.11 +1.5
27,488 - MPMX20_00026 0.11 -0.9
27,509 - MPMX20_00026 0.13 +0.5
27,554 + MPMX20_00026 0.17 -0.3
27,554 + MPMX20_00026 0.17 -0.5
27,563 - MPMX20_00026 0.18 -0.7
27,563 - MPMX20_00026 0.18 -1.5
27,567 + MPMX20_00026 0.18 +1.3
27,575 - MPMX20_00026 0.19 +2.7
27,575 - MPMX20_00026 0.19 -0.7
27,626 + MPMX20_00026 0.24 +1.7
27,627 + MPMX20_00026 0.24 -1.5
27,764 - MPMX20_00026 0.36 +1.7
27,778 + MPMX20_00026 0.38 -2.6
27,823 - MPMX20_00026 0.42 -0.2
27,823 - MPMX20_00026 0.42 -1.7
27,823 - MPMX20_00026 0.42 -1.5
27,935 - MPMX20_00026 0.52 -1.0
27,937 + MPMX20_00026 0.52 -1.8
27,945 - MPMX20_00026 0.53 +1.1
28,024 - MPMX20_00026 0.60 +0.7
28,062 + MPMX20_00026 0.64 +2.2
28,129 + MPMX20_00026 0.70 -1.3
28,129 - MPMX20_00026 0.70 -1.0
28,312 - MPMX20_00026 0.87 +0.7
28,396 - -1.9
28,447 + +1.7
28,455 - -0.6
28,455 - +1.7
28,455 - -1.0
28,521 - MPMX20_00027 0.14 +0.2
28,523 + MPMX20_00027 0.14 +1.6
28,523 + MPMX20_00027 0.14 -0.9
28,523 + MPMX20_00027 0.14 -0.3
28,531 - MPMX20_00027 0.14 +1.1
28,531 - MPMX20_00027 0.14 +0.4
28,531 - MPMX20_00027 0.14 +0.1
28,531 - MPMX20_00027 0.14 -0.2
28,613 + MPMX20_00027 0.21 -0.9
28,626 - MPMX20_00027 0.22 -0.8
28,626 - MPMX20_00027 0.22 +0.5
28,628 + MPMX20_00027 0.23 +0.7
28,691 + MPMX20_00027 0.28 +0.8
28,705 + MPMX20_00027 0.29 -1.7
28,713 - MPMX20_00027 0.30 -1.1
28,715 + MPMX20_00027 0.30 +0.9
28,716 - MPMX20_00027 0.30 -0.2
28,717 - MPMX20_00027 0.30 +0.4
28,728 + MPMX20_00027 0.31 -1.8
28,739 + MPMX20_00027 0.32 +1.7
28,792 - MPMX20_00027 0.36 -0.1
28,817 + MPMX20_00027 0.39 +1.1
28,820 - MPMX20_00027 0.39 -1.5
28,827 + MPMX20_00027 0.39 -1.1
28,827 + MPMX20_00027 0.39 +0.7
28,835 - MPMX20_00027 0.40 -0.3
28,838 + MPMX20_00027 0.40 +1.4
28,928 + MPMX20_00027 0.48 -0.6
28,987 + MPMX20_00027 0.53 -0.6
29,024 + MPMX20_00027 0.56 +0.2
29,060 + MPMX20_00027 0.59 -1.1
29,106 + MPMX20_00027 0.63 +1.1
29,106 + MPMX20_00027 0.63 +1.7
29,259 + MPMX20_00027 0.76 +1.7
29,259 + MPMX20_00027 0.76 -0.1
29,259 + MPMX20_00027 0.76 +1.3
29,259 + MPMX20_00027 0.76 -0.1
29,267 - MPMX20_00027 0.77 +1.1
29,267 - MPMX20_00027 0.77 -0.3
29,267 - MPMX20_00027 0.77 -0.9
29,268 - MPMX20_00027 0.77 +0.6
29,354 + MPMX20_00027 0.84 -0.1
29,381 - MPMX20_00027 0.86 -2.3
29,404 + MPMX20_00027 0.88 -1.1
29,404 + MPMX20_00027 0.88 -1.0
29,412 - MPMX20_00027 0.89 -2.3
29,412 - MPMX20_00027 0.89 +0.1
29,435 - +0.4
29,478 - +1.4
29,507 + -0.8
29,617 + -0.5
29,669 + -0.1
29,801 - -0.1
29,876 + MPMX20_00028 0.19 -0.1
29,930 - MPMX20_00028 0.25 +0.9
29,930 - MPMX20_00028 0.25 -1.4
29,956 + MPMX20_00028 0.28 -0.8
30,004 + MPMX20_00028 0.34 +0.4
30,012 - MPMX20_00028 0.35 +1.1
30,026 + MPMX20_00028 0.37 +2.0
30,034 + MPMX20_00028 0.38 +1.7
30,034 + MPMX20_00028 0.38 +0.1
30,036 + MPMX20_00028 0.38 -0.4
30,036 + MPMX20_00028 0.38 -0.0
30,044 - MPMX20_00028 0.39 -0.5
30,044 - MPMX20_00028 0.39 -1.2
30,049 - MPMX20_00028 0.39 -1.3
30,059 - MPMX20_00028 0.41 -1.7
30,085 + MPMX20_00028 0.44 -2.6
30,093 - MPMX20_00028 0.45 +1.7
30,093 - MPMX20_00028 0.45 -0.9
30,108 + MPMX20_00028 0.47 -1.8
30,108 + MPMX20_00028 0.47 -1.3
30,108 + MPMX20_00028 0.47 -1.4
30,108 + MPMX20_00028 0.47 +1.7
30,116 - MPMX20_00028 0.47 +0.1
30,116 - MPMX20_00028 0.47 -0.1
30,116 - MPMX20_00028 0.47 -0.1
30,118 + MPMX20_00028 0.48 -1.2
30,118 + MPMX20_00028 0.48 -0.3
30,118 + MPMX20_00028 0.48 -1.7
30,118 + MPMX20_00028 0.48 -0.0
30,118 + MPMX20_00028 0.48 -0.5
30,118 + MPMX20_00028 0.48 -0.8
30,118 + MPMX20_00028 0.48 -1.1
30,118 + MPMX20_00028 0.48 -0.7
30,118 + MPMX20_00028 0.48 -1.3
30,118 + MPMX20_00028 0.48 -1.3
30,118 + MPMX20_00028 0.48 +0.4
30,118 + MPMX20_00028 0.48 -0.3
30,126 - MPMX20_00028 0.49 +0.1
30,126 - MPMX20_00028 0.49 +0.7
30,126 - MPMX20_00028 0.49 -1.6
30,126 - MPMX20_00028 0.49 -0.7
30,126 - MPMX20_00028 0.49 +1.1
30,126 - MPMX20_00028 0.49 +0.5
30,126 - MPMX20_00028 0.49 +0.7
30,126 - MPMX20_00028 0.49 -0.2
30,126 - MPMX20_00028 0.49 -1.8
30,126 - MPMX20_00028 0.49 -0.3
30,131 - MPMX20_00028 0.49 +0.4
30,132 + MPMX20_00028 0.49 -0.0
30,140 - MPMX20_00028 0.50 +0.0
30,185 + MPMX20_00028 0.56 -0.1
30,218 - MPMX20_00028 0.60 -0.8
30,318 - MPMX20_00028 0.72 +1.1
30,320 - MPMX20_00028 0.72 +0.4
30,334 - MPMX20_00028 0.74 +2.7
30,336 + MPMX20_00028 0.74 -1.1
30,344 - MPMX20_00028 0.75 -0.9
30,352 - MPMX20_00028 0.76 -0.3
30,380 + MPMX20_00028 0.79 +0.7
30,394 + MPMX20_00028 0.81 -1.7
30,402 - MPMX20_00028 0.82 -0.1
30,402 - MPMX20_00028 0.82 -2.1
30,423 - MPMX20_00028 0.84 -0.5
30,450 - MPMX20_00028 0.88 -1.0
30,488 - -0.6
30,511 + +3.3
30,516 + -0.1

Or see this region's nucleotide sequence